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Pan-phylum genomes of hornworts reveal conserved autosomes but dynamic accessory and sex chromosomes
2025.
Schafran, P., Hauser, D.A., Nelson, J.M., Xu, X., Mueller, Lukas, A., Kulshrestha, S., Smalley,I., de Vries, S., Irisarri, I., de Vries, J., Davies, K., Villarreal, J.C.A., Li, Fay-Wei
Nature Plants.
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Hornworts reveal a spatial model for pyrenoid-based CO2-concentrating mechanisms in land plants
2025.
Robison, T.A., Oh, Z.G., Lafferty, D., Xu, X., Villarreal, J.C.A., Gunn, L.H., Li, Fay-Wei
Nature Plants.
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Unique biogenesis and kinetics of hornwort Rubiscos revealed by synthetic biology systems
2024.
Oh, Z.G., Robison, T.A., Loh, D.H., Ang, W.S.L., Ng, J.Z.Y., Li, Fay-Wei, Gunn, L.H.
Molecular Plant.
17
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1833–1849
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Sensory integration of food and population density during the diapause exit decision involves insulin-like signaling in Caenorhabditis elegans
2024.
Zhang, M. G., Seyedolmohadesin, M., Hawk Mercado, S., Tauffenberger, A., Park, H., Finnen, N., Schroeder, Frank, Venkatachalam, V., Sternberg, P. W.
Proceedings of the National Academy of Sciences.
121
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Viral and cellular determinants of polarized trafficking of viral envelope proteins from insect-specific and insect-vectored viruses in insect midgut and salivary gland cells
2024.
Hodgson, J.J., Chen, R.Y., Blissard, Gary W., Buchon, N.0.
Journal of Virology.
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Host-microbe interactions rewire metabolism in a C. elegans model of leucine breakdown deficiency
2024.
Lee, Y., Fox, B. W., Guo, R., Curtis, B. J., Yu, J., Kim, S., Nanda, S., Baumann, V., Yilmaz, L. S., Haynes, C. M., Schroeder, Frank, Walhout, A. J. M.
Nature Metabolism.
6
:
1584–1600
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Reconstructing the global migration history of Phytophthora infestans towards Colombia
2024.
Patarroyo, C., Lucca, F., Dupas, S., Restrepo, Silvia
Phytopathology.
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Genomes of multicellular algal sisters to land plants illuminate signaling network evolution
2024.
Feng, X., Zheng, J., Irisarri, I., Yu, H., Zheng, B., Ali, Z., de Vries, S., Keller, J., Fürst-Jansen, J. M. R., Dadras, A., Zegers, J. M. S., Rieseberg, T. P., Dhabalia Ashok, A., Darienko, T., Bierenbroodspot, M. J., Gramzow, L., Petroll, R., Haas, F. B., Fernandez-Pozo, N., Nousias, O., Li, T., Fitzek, E., Grayburn, W. S., Rittmeier, N., Permann, C., Rümpler, F., Archibald, J. M., Theißen, G., Mower, J. P., Lorenz, M., Buschmann, H., von Schwartzenberg, K., Boston, L., Hayes, R. D., Daum, C., Barry, K., Grigoriev, I. V., Wang, X., Li, Fay-Wei, Rensing, S. A., Ben Ari, J., Keren, N., Mosquna, A., Holzinger, A., Delaux, P.-M., Zhang, C., Huang, J., Mutwil, M., de Vries, J., Yin, Y.
Nature Genetics.
56
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1018–1031
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Convergent evolution of fern nectaries facilitated independent recruitment of ant-bodyguards from flowering plants
2024.
Suissa, J.S., Li, Fay-Wei, C.S. Moreau
Nature Communications.
15
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Biolistics-mediated transformation of hornworts and its application to study pyrenoid protein localization
2024.
Lafferty, D. J., Robison, T. A., Gunadi, A., Schafran, P. W., Gunn, L. H., Van Eck, Joyce., Li, Fay-Wei.
Journal of Experimental Botany.
75
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4760–4771
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Antagonism between neuropeptides and monoamines in a distributed circuit for pathogen avoidance
2024.
Marquina-Solis, J., Feng, L., Vandewyer, E., Beets, I., Hawk, J., Colón-Ramos, D. A., Yu, J., Fox, B. W., Schroeder, Frank, Bargmann, C. I.
Cell Reports.
43
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Peripheral peroxisomal β-oxidation engages neuronal serotonin signaling to drive stress-induced aversive memory in C. elegans
2024.
Tsai, S., Wu, Y., Fajardo Palomino, D., Schroeder, Frank, Pan, C.
Cell Reports.
43
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The nematode-trapping fungus Arthrobotrys oligospora detects prey pheromones via G protein-coupled receptors
2024.
Kuo, C., Tay, R. J., Lin, H., Juan, S., Vidal-Diez de Ulzurrun, G., Chang, Y., Hoki, J., Schroeder, Frank, Hsueh, Y.
Nature Microbiology.
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1738–1751
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Amplicon sequencing and shotgun metagenomics reveal functional impacts of aminoethoxyvinylglycine-mediated ripening and cold storage on the microbiome of ‘NY1’ apples
2024.
Lane, C., Al Shoffe, Y., Schafran, P., Li, Fay-Wei, Kao-Kniffin, J., Watkins, C. B.
Postharvest Biology and Technology.
213
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Population genomics of the Isoetes appalachiana (Isoetaceae) complex supports a ‘diploids-first’ approach to conservation
2024.
Wickell, D., Landis, J., Zimmer, E., Li, Fay-Wei
Annals of Botany.
133
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261–272
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Pheromone-based communication influences the production of somatic extracellular vesicles in C. elegans
2024.
Szczepańska, A., Olek, K., Kołodziejska, K., Yu, J., Ibrahim, A. T., Adamkiewicz, L., Schroeder, Frank, C., Pokrzywa, W., Turek, M.
Nature Communications.
15
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Dietary fiber is a critical determinant of pathologic ILC2 responses and intestinal inflammatio
2024.
Arifuzzaman, M., Won, T. H., Yano, H., Uddin, J., Emanuel, E. R., Hu, E., Zhang, W., Li, T.-T., Jin, W.-B., Grier, A., Kashyap, S., Guo, C.-J., Schroeder, Frank, Artis, D.
Journal of Experimental Medicine.
221
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Evolutionarily related host and microbial pathways regulate fat desaturation in C. elegans
2024.
Fox, B. W., Helf, M. J., Burkhardt, R. N., Artyukhin, A. B., Curtis, B. J., Fajardo Palomino, D., Schroeder, A. F., Chaturbedi, A., Tauffenberger, A., Wrobel, C. J. J., Zhang, Y. K., Lee, S. S., Schroeder, Frank
Nature Communications.
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Receptor-associated kinases control the lipid provisioning program in plant–fungal symbiosis
2024.
Ivanov, S., Harrison, Maria J.
Science.
383
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443–448
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Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes
2024.
Li, C., Wickell, D., Kuo, L.-Y., Chen, X., Nie, B., Liao, X., Peng, D., Ji, J., Jenkins, J., Williams, M., Shu, S., Plott, C., Barry, K., Rajasekar, S., Grimwood, J., Han, X., Sun, S., Hou, Z., He, W., Dai, G., Sun, C., Schmutz, J., Leebens-Mack, J. H., Li, Fay-Wei, Wang, L.
Proceedings of the National Academy of Sciences USA.
121
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Amino acid and protein specificity of protein fatty acylation in C. elegans
2024.
Zhang, B., Yu, Y., Fox, B. W., Liu, Y., Thirumalaikumar, V. P., Skirycz, A., Lin, H., Schroeder, Frank
Proceedings of the National Academy of Sciences.
121
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Vitamin B12 produced by gut bacteria modulates cholinergic signalling
2024.
Kang, W.K., Florman, J.T., Araya, A., Fox, B.W., Thackeray, A., Schroeder, Frank, Walhout, A.J.M., Alkema, M.J.
Nature Cell Biology.
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72–85
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Acylspermidines are conserved mitochondrial sirtuin-dependent metabolites
2024.
Zhang, B., Mullmann, J., Ludewig, A.H., Fernandez, I.I., Bales, T., Weiss, R.S., Schroeder, Frank
Nature Chemical Biology.
20
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812–822
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The ancestral chromatin landscape of land plants
2023.
Hisanaga, T., Wu, S., Schafran, P., Axelsson, E., Akimcheva, S., Dolan, L., Li, Fay-Wei, Berger, F.
New Phytologist.
240
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2085–2101
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A relict phycobilisome structure discovered from a thylakoid-free cyanobacterium
2023.
Jiang, H.-W., Wu, H.-Y., Wang, C.-H., Yang, C.-H., Ko, J.-T., Ho, H.-C., Tsai, M.-D., Bryant, D. A., Li, Fay-Wei, Ho, M.-C., Ho, M.-Y.
Nature Communications.
14
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Twelve new bacterial genomes from a non-axenic culture of Griffithsia monilis (Rhodophyta)
2023.
Rizzieri, Y. C., Lipari, A., Gunn, L., Li, Fay-Wei
Microbiology Resource Announcements.
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Genome sequence of a symbiotic cyanobacterium from the flowering plant Gunnera tinctoria
2023.
Ang, W. S. L., Burleigh, O., Frail, S., Santos, Y. V. S., Tyagi, B., Li, Fay-Wei
Microbiology Resource Announcements.
12
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Resolving deep relationships and revealing ancient whole-genome duplications in Pteridaceae using transcriptomic data
2023.
Song, M. J., Rothfels, C. J., Schuettpelz, E., Nitta, J., Huiet, L., Li, Fay-Wei, Wefferling, K. M.
American Fern Journal.
113
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191–210
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Cytokinin Promotes Jasmonic Acid Accumulation in the Control of Maize Leaf Growth
2023.
Uyehara, A.N., Del Valle-Echevarria, A.R., Hunter, C.T., Nelissen, H., Demuynck, K., Cahill, J.F., Gorman, Z., Jander, Georg, Muszynski, M.G.
Plants (Basel).
12
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Temporal matches between monarch butterfly and milkweed population changes over the past 25,000 years
2023.
Boyle, J.H., Strickler, S., Twyford, A.D., Ricono, A., Powell, A., Zhang, J., Xu, H., Smith, R., Dalgleish, H.J., Jander, Georg, Agrawal, A.A., Puzey, J.R.
Current Biology.
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The nuclear lamina is required for proper development and nuclear shape distortion in tomato
2023.
Blunt, E., Choi, J., Sussman, H., Christopherson, R., Keen, P., Rahmati Ishka, M., Li, L., Idrovo, J., Julkowska, Magdalena, Van Eck, Joyce, Richards, Eric Jean
Journal of Experimental Botany.
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NIGT1.4 maintains primary root elongation in response to salt stress through induction of ERF1 in Arabidopsis
2023.
Hu, Y., Zeng, L., Lv, X., Guo, J., Li, X., Zhang, X., Wang, D., Wang, J., Bi, J., Julkowska, Magdalena, Li, B.
The Plant Journal.
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The chromosome hoarding syndrome of (some) ferns and lycophytes
2023.
Li, Fay-Wei
Nature Reviews Genetics.
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A Citrullus genus super-pangenome reveals extensive variations in wild and cultivated watermelons and sheds light on watermelon evolution and domestication
2023.
Wu, S., Sun, H., Gao, L., Branham, S., McGregor, C., Renner, S.S., Xu, Y., Kousik, C., Wechter, W.P., Levi, A,. Fei, Zhangjun
Plant Biotechnology Journal.
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Inoculation of Maize with Sugarcane Mosaic Virus Constructs and Application for RNA Interference in Fall Armyworms
2023.
Gull, I., Jander, Georg
Bio-protocol.
13
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An ancient route towards salicylic acid and its implications for the perpetual Trichormus–Azolla symbiosis
2023.
de Vries, S., Herrfurth, C., Li, Fay-Wei, Feussner, I., de Vries, J.
Plant, Cell & Environment.
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Natural genetic variation in the pheromone production of C. elegans
2023.
Lee, D., Fox, B.W., Palominom D,F., Pandam O., Tenjom F.J., Koury, E.J., Evans, K.S., Stevens, L., Rodrigues, P.R., Kolodziej, A.R., Schroeder, Frank C., Andersen, E.C.
Proceedings of the National Academy of Sciences.
120
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Proteinogenic dipeptides, an emerging class of small-molecule regulators
2023.
Minen, R.I., Thirumalaikumar, V.P., Skirycz, Aleksandra
Current Opinion in Plant Biology.
75
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Genome- and transcriptome-wide off-target analyses of a high-efficiency adenine base editor in tomato
2023.
Sretenovic, S., Green, Y., Wu, Y., Cheng, Y., Zhang, T., Van Eck, Joyce, Qi, Y.
Plant Physiology.
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Convergent and divergent evolution of plant chemical defenses
2023.
Negin, B, Jander, Georg
Current Opinion in Plant Biology.
73
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Ptr1 and ZAR1 immune receptors confer overlapping and distinct bacterial pathogen effector specificities
2023.
Ahn, Y.J., Kim, H., Choi, S., Mazo-Molina, C., Prokchorchik, M., Zhang, N., Kim, B., Mang, H., Koehler, N., Kim, J., Lee, S., Yoon, H., Choi, D., Kim, M.S., Segonzac, C., Martin, Gregory B., Schultink, A., Sohn, K.H.
New Phytologist.
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Protein interactome of 3′,5′-cAMP reveals its role in regulating the actin cytoskeleton
2023.
Figueroa, N.E., Franz, P., Luzarowski, M., Martinez-Seidel, F., Moreno, J.C., Childs, D., Ziemblicka, A., Sampathkumar, A., Andersen, T.G., Tsiavaliaris, G., Chodasiewicz, M., Skirycz, Aleksandra
The Plant Journal.
115
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1214–1230
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Broad anti-pathogen potential of DEAD box RNA helicase eIF4A-targeting rocaglates
2023.
Obermann, W., Azri, M.F.D., Konopka, L., Schmidt, N., Magari, F., Sherman, J., Silva, L.M.R., Hermosilla, C., Ludewig, A.H., Houhou, H., Haeberlein, S., Luo, M.Y., Häcker, I., Schetelig, M.F., Grevelding, C.G., Schroeder, Frank C., Lau, G.S.K., Taubert, A., Rodriguez, A., Heine, A., Yeo, T.C., Grünweller, A., Taroncher-Oldenburg, G.
Scientific Reports.
13
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Balancing read length and sequencing depth: Optimizing Nanopore long-read sequencing for monocots with an emphasis on the Liliales
2023.
De La Cerda, G.Y., Landis, J.B., Eifler, E., Hernandez, A.I., Li, Fay-Wei, Zhang, J., Tribble, C.M., Karimi, N., Chan, P., Givnish, T., Strickler, S.R., Specht, C.D.
Applications in Plant Sciences.
6
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Grafting systems for plant cadmium research: Insights for basic plant physiology and applied mitigation
2023.
Marques, D.N., Mason, C., Stolze, S.C., Harzen, A., Nakagami, H., Skirycz, Aleksandra, Piotto, F.A., Azevedo, R.A.
Science of The Total Environment.
892
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Starch deficiency in tomato causes transcriptional reprogramming that modulates fruit development, metabolism and stress responses
2023.
Nicolas, P., Pattison, R.J., Zheng, Y., Lapidot-Cohen, T., Brotman, Y., Osorio, S., Fernie, A.R., Fei, Zhangjun, Catala, Carmen.
Journal of Experimental Botany.
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Transcriptomic and metabolic profiling of watermelon uncovers the role of salicylic acid and flavonoids in the resistance to cucumber green mottle mosaic virus
2023.
Liu, M., Kang, B., Wu, H., Aranda, M.A., Peng, B., Liu, L., Fei, Zhangjun, Hong, N., Gu, Q.
Journal of Experimental Botany.
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Loss-of-function mutations in WRKY22 and WRKY25 impair stomatal-mediated immunity and PTI and ETI responses against Pseudomonas syringae pv. tomato
2023.
Ramos, R.N., Zhang, N., Lauff, D.B., Valenzuela-Riffo, F., Figueroa, C.R., Martin, Gregory B., Pombo, M.A., Rosli, H.G.
Plant Molecular Biology.
112
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161–177
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Connecting Data for Consumer Preferences, Food Quality and Breeding in support of Market-oriented Breeding of Root, Tuber, and Banana Crops
2023.
Arnaud, E., Menda, N., Tran, T., Asiimwe, A., Kanaabi, M., Meghar, K., Forsythe, L., Kawuki, R., Ellebrock, B., Kayondo, I.S., Agbona, A., Zhang, X., Mendes, T., Laporte, M.A., Nakitto, M., Ssali, R.T., Asfaw, A., Uwimana, B., Ogbete, C.E., Makunde, G., Maraval, I., Mueller, Lukas A., Bouniol, A., Fauvelle, E., Dufour, D.
Journal of the Science of Food and Agriculture.
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Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species
2023.
Li, N., He, Q.,Wang, J., Wang, B., Zhao, J., Huang, S., Yang, T., Tang, Y., Yang, S., Aisimutuola, P., Xu, R., Hu, J., Jia, C., Ma, K., Li, Z., Jiang, F., Gao, J., Lan, H., Zhou, Y., Zhang, X., Huang, S., Fei, Zhangjun, Wang, H., Li, H., Yu, Q.
Nature Genetics.
55
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852–860
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Oligonucleotide Catabolism-Derived Gluconucleosides in Caenorhabditis elegans
2023.
Curtis, B.J., Schwertfeger, T.J., Burkhardt, .RN., Fox, B.W., Andrzejewsk,i J., Wrobel, C.J.J., Yu, J., Rodrigues PR, Tauffenberger, A., Schroeder, Frank
Journal of the American Chemical Society.
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Stress-related biomolecular condensates in plants
2023.
Solis-Miranda, J., Chodasiewicz, M., Skirycz, Aleksandra, Fernie, A.R., Moschou, P.N., Bozhkov, P.V., Gutierrez-Beltran, E.
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Genomic analyses reveal dead-end hybridization between two deeply divergent kiwifruit species rather than homoploid hybrid speciation
2023.
Yu, X., Qin, M., Qu, M., Jiang, Q., Guo, S., Chen, Z., Shen, Y., Fu, G., Fei, Zhangjun, Huang, H., Gao, L., Yao, X.
The Plant Journal.
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SnRK1 kinase-mediated phosphorylation of transcription factor bZIP39 regulates sorbitol metabolism in apple
2023.
Meng, D., Cao, H., Yang, Q., Zhang, M., Borejsza-Wysocka, E., Wang, H., Dandekar, A.M., Fei, Zhangjun, Cheng. L.
Plant Physiology.
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LncRNA FLAIL affects alternative splicing and represses flowering in Arabidopsis
2023.
Jin, Y., Ivanov, M., Nelson Dittrich, A., Nelson, Andrew D.L., Marquardt, S.
The EMBO Journal.
42
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Repurposing degradation pathways for modular metabolite biosynthesis in nematodes
2023.
Wrobel, C.J.J., Schroeder, Frank
Nature Chemical Biology.
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Structure and dynamics of the Arabidopsis O-fucosyltransferase SPINDLY.
2023.
Kumar, S., Wang, Y., Zhou, Y., Dillard, L., Li, Fay-Wei, Sciandra, C.A., Sui, N., Zentella, R., Zahn, E., Shabanowitz, J., Hunt, D.F., Borgnia, M.J., Bartesaghi, A., Sun, T.P., Zhou, P.
Nat Commun..
14
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1538
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Tomato receptor-like cytoplasmic kinase Fir1 interacts with a negative regulator of jasmonic acid signaling
2023.
Sobol, G., Martin, Gregory B., Sessa, G.
MicroPubl Biol..
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The Torreya grandis genome illuminates the origin and evolution of gymnosperm-specific sciadonic acid biosynthesis.
2023.
Lou, H., Song, L., Li, X., Zi, H., Chen, W., Gao, Y., Zheng, S., Fei, Zhangjun, Sun, X., Wu, J.
Nat Commun..
14
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1315
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Non-volatile metabolites mediating plant interactions with insect herbivores
2023.
Luo, M., Li, B., Jander, Georg, Zhou, S.
Plant J..
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Characterization of the USDA Cucurbita pepo, C. moschata, and C. maxima germplasm collections
2023.
Hernandez, C.O., Labate, J., Reitsma, K., Fabrizio, J., Bao, K., Fei, Zhangjun, Grumet, R., Mazourek, M.
Frontiers in Plant Science.
14
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MangoBase: A Genomics Portal and Gene Expression Atlas for Mangifera indica
2023.
Gómez-Ollé, A., Bullones, A., Hormaza, J.I., Mueller, Lukas A., Fernandez-Pozo, N.
Plants.
12
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Information theory and machine learning illuminate large-scale metabolomic responses of Brachypodium distachyon to environmental change
2023.
Mahood, E.H., Bennett, A.A., Komatsu, K., Kruse, L.H., Lau, V., Rahmati Ishka, M., Jiang, Y., Bravo, A., Louie, K., Bowen, B.P., Harrison, Maria J., Provart, N.J., Vatamaniuk, O.K., Moghe, G.D.
The Plant Journal.
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Deregulation of ζ-carotene desaturase in Arabidopsis and tomato exposes a unique carotenoid-derived redundant regulation of floral meristem identity and function.
2023.
McQuinn, R.P., Leroux, J., Sierra, J., Escobar-Tovar, L., Frusciante, S., Finnegan, E.J., Diretto, G., Giuliano, G., Giovannoni, James J., León, P., Pogson, B.J.
The Plant Journal.
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Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana
2023.
Luzarowska, U., Ruß, A.K., Joubès, J., Batsale, M., Szymański, J., Thirumalaikumar, V.P., Luzarowski, M., Wu, S., Zhu, F., Endres, N., Khedhayir, S., Schumacher, J., Jasinska, W., Xu, K., Cordoba, S.M.C., Weil, S., Skirycz, Aleksandra, Fernie, A.R., Li-Beisson, Y., Fusari, C.M., Brotman, Y.
Oxford Academic.
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Sex-specificity of the C. elegans metabolome
2023.
Burkhardt, R.N., Artyukhin, A.B., Aprison, E.Z., Curtis, B.J., Fox, B.W., Ludewig, A.H., Palomino, D.F., Luo, J., Chaturbedi, A., Panda, O., Wrobel, C.J.J., Baumann, V., Portman, D.S., Lee, S.S., Ruvinsky, I., Schroeder, Frank C.
Nat Commun..
14
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320
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Natural overexpression of CAROTENOID CLEAVAGE DIOXYGENASE 4 in tomato alters carotenoid flux
2023.
Yoo, H.J., Chung, M.Y., Lee, H.A., Lee, S.B., Grandillo, S., Giovannoni, James J., Lee, J.M.
Plant Physiol..
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The transcription factor VviNAC60 regulates senescence- and ripening-related processes in grapevine
2023.
D'Incà, E., Foresti, C., Orduña, L., Amato, A., Vandelle, E., Santiago, A., Botton, A., Cazzaniga, S., Bertini, E., Pezzotti, M., Giovannoni, James J., Vrebalov, J., Matus, J.T., Tornielli, G.B., Zenoni, S.
Plant Physiol..
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PURC Provides Improved Sequence Inference for Polyploid Phylogenetics and Other Manifestations of the Multiple-Copy Problem
2023.
Schafran, P., Li, Fay-Wei, Rothfels, C.J.
Methods Mol Biol..
2545
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189–206
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Quantification of plant cardenolides by HPLC, measurement of Na+/K+-ATPase inhibition activity, and characterization of target enzymes
2023.
Petschenka, G., Züst, T., Hastings, A.P., Agrawal, A.A., Jander, Georg
Methods Enzymol..
680
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275–302
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Linking discoveries, mechanisms, and technologies to develop a clearer perspective on plant long non-coding RNAs
2023.
Palos, K., Yu, L., Railey, C.E., Nelson Dittrich, A.C., Nelson, Andrew D.L.
Plant Cell.
35
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1762–1786
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Abscisic acid mediated strawberry receptacle ripening involves the interplay of multiple phytohormone signaling networks
2023.
Li, B.J., Shi, Y.N., Jia, H.R., Yang, X.F., Sun, Y.F., Lu, J., Giovannoni, JamesJ., Jiang, G.H., Rose, J.K.C., Chen, K.S.
Front Plant Sci..
14
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Loss of OPT3 function decreases phloem copper levels and impairs crosstalk between copper and iron homeostasis and shoot-to-root signaling in Arabidopsis thaliana
2023.
Chia, J.C., Yan, J., Rahmati Ishka, M., Faulkner, M.M., Simons, E., Huang, R., Smieska, L., Woll, A., Tappero, R., Kiss, A., Jiao, C., Fei, Zhangjun, Kochian, L.V., Walker, E., Piñeros, M., Vatamaniuk, O.K.
Plant Cell.
35
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2157–2185
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Metabolism of crown tissue is crucial for drought tolerance and recovery after stress cessation in Lolium/Festuca forage grasses.
2023.
Perlikowski, D., Skirycz, Aleksandra, Marczak, Ł., Lechowicz, K., Augustyniak, A., Michaelis, Ä., Kosmala, A.
J Exp Bot..
74
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396–414
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Analyses of Marsilea vestita genome and transcriptomes do not support widespread intron retention during spermatogenesis.
2023.
Rahmatpour, N., Kuo, L.Y., Kang, J., Herman, E., Lei, L., Li, M., Srinivasan, S., Zipper, R., Wolniak, S.M., Delwiche, C.F., Mount, S., Li, Fay-Wei
New Phytol..
237
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1490–1494
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A family of methyl esterases converts methyl salicylate to salicylic acid in ripening tomato fruit.
2023.
Frick, E.M., Sapkota, M., Pereira Garcia, L., Wang, Y., Hermanns, A., Giovannoni, James J., van der Knaap, E., Tieman, D.M., Klee, H.J.
Plant Physiol..
191
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110–124
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Establishing Physalis as a Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome.
2023.
He, J., Alonge, M., Ramakrishnan, S., Benoit, M., Soyk, S., Reem, N.T., Hendelman, A., Van Eck, Joyce, Schatz, M.C., Lippman, Z.B.
Plant Cell..
35
:
351–368
View
Annotation of Hox cluster and Hox cofactor genes in the Asian citrus psyllid, Diaphorina citri, reveals novel features
2022.
Shippy, T.D., Hosmani, P.S., Flores-Gonzalez, M., Mueller, Lukas A., Hunter, W.B., Brown, S.J., D'Elia, T., Saha, S.
GigaByte.
49
:
View
Genomic identification, annotation, and comparative analysis of Vacuolar-type ATP synthase subunits in Diaphorina citri
2022.
Grace, R., Massimino, C., Shippy, T.D., Tank, W., Hosmani, P.S., Flores-Gonzalez, M., Mueller, Lukas A., Hunter, W.B., Benoit, J.B., Brown, S.J., D'Elia, T., Saha, S.
GigaByte.
39
:
View
Ubiquitin-proteasome pathway annotation in Diaphorina citri can reveal potential targets for RNAi-based pest management
2022.
Tank, W., Shippy, T., Thate, A., Massimino, C., Hosmani, P.S., Flores-Gonzalez, M., Mueller, Lukas A., Hunter, W.B., Brown, S.J., D'Elia, T., Saha, S.
GigaByte.
43
:
View
Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri
2022.
Shippy, T.D., Miller, S., Tamayo, B., Hosmani, P.S., Flores-Gonzalez, M., Mueller, Lukas A., Hunter, W.B., Brown, S.J., D'Elia, T., Saha, S.
GigaByte.
46
:
View
Annotation of putative circadian rhythm-associated genes in Diaphorina citri (Hemiptera: Liviidae)
2022.
Reynolds, M., de Oliveira, L., Vosburg, C., Paris, T., Massimino, C., Norus, J., Ortiz, Y., Espino, M., Davis, N., Masse, R., Neiman, A., Holcomb, R., Gervais, K., Kemp, M., Hoang, M., Shippy, T.D., Hosmani, P.S., Flores-Gonzalez, M., Pelz-Stelinski, K., Qureshi, J.A., Mueller, Lukas A., Hunter, W.B., Benoit, J.B., Brown, S.J., D'Elia, T., Saha, S.
GigaByte.
48
:
View
Don’t let go – co-fractionation mass spectrometry for untargeted mapping of protein-metabolite interactomes
2022.
Schlossarek, D., Zhang, Y., Sokolowska, E.M., Fernie, A.R., Luzarowski, M., Skirycz, Aleksandra
Plant J..
113
:
904–914
View
Horizontally transferred genes as RNA interference targets for aphid and whitefly control
2022.
Feng, H., Chen, W., Hussain, S., Shakir, S., Tzin, V., Adegbayi, F., Ugine, T., Fei, Zhangjun, Jander, Georg
Plant Biotechnol J..
:
View
Telomerase RNA in Hymenoptera (Insecta) switched to plant/ciliate-like biogenesis
2022.
Fajkus, P., Adámik, M., Nelson, Andrew D.L., Kilar, A.M., Franek, M., Bubeník, M., Frydrychová, R.Č., Votavová, A., Sýkorová, E., Fajkus, J., Peška, V.
Nucleic Acids Res..
51
:
420–433
View
Tomato receptor-like cytoplasmic kinase Fir1 is involved in flagellin signaling and pre-invasion immunity
2022.
Sobol, G., Majhi, B.B., Pasmanik-Chor, M., Zhang, N., Roberts, H.M., Martin, Gregory B., Sessa, G.
Plant Physiol..
:
View
Domestication and selection footprints in Persian walnuts (Juglans regia)
2022.
Luo, X., Zhou, H., Cao, D., Yan, F., Chen, P., Wang, J., Woeste, K., Chen, X., Fei, Zhangjun, An, H., Malvolti, M., Ma, K., Liu, C., Ebrahimi, A., Qiao, C., Ye, H., Li, M., Lu, Z., Xu, J., Cao, S., Zhao, P.
PLoS Genet..
18
:
e1010513
View
Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence.
2022.
Tu, X., Ren, S., Shen, W., Li, J., Li, Y., Li, C., Li, Y., Zong, Z., Xie, W., Grierson, D., Fei, Zhangjun, Giovannoni, James J., Li, P., Zhong, S.
Nat Commun..
13
:
7632
View
Composition and function of stress granules and P-bodies in plants
2022.
Kearly, A., Nelson, Andrew D.L., Skirycz, Aleksandra, Chodasiewicz, M.
Semin Cell Dev Biol..
:
View
Neuronally produced betaine acts via a ligand-gated ion channel to control behavioral states
2022.
Hardege, I., Morud, J., Yu, J., Wilson, T.S., Schroeder, Frank C, Schafer, W.R.
Proc Natl Acad Sci U S A.
119
:
e2201783119
View
Metagenomic identification of novel viruses of maize and teosinte in North America
2022.
Lappe, R.R., Elmore, M.G., Lozier, Z.R., Jander, Georg, Miller, W.A., Whitham, S.A.
BMC Genomics.
23
:
767
View
A Medicago truncatula Cell Biology Resource: Transgenic Lines Expressing Fluorescent Protein-Based Markers of Membranes, Organelles, and Subcellular Compartments.
2022.
Ivanov, S., Daniels, D.A., Harrison, Maria J.
Mol Plant Microbe Interact..
:
View
Tree tobacco (Nicotiana glauca) cuticular wax composition is essential for leaf retention during drought, facilitating a speedy recovery following rewatering.
2022.
Negin, B., Hen-Avivi, S., Almekias-Siegl, E., Shachar, L., Jander, Georg, Aharoni, A.
New Phytol..
237
:
1574–1589
View
Inulin fibre promotes microbiota-derived bile acids and type 2 inflammation.
2022.
Arifuzzaman, M., Won, T.H., Li, T.T., Yano, H., Digumarthi, S., Heras, A.F., Zhang, W., Parkhurst, C.N., Kashyap, S., Jin, W.B., Putzel, G.G., Tsou, A.M., Chu, C., Wei, Q., Grier, A., JRI IBD Live Cell Bank Consortium, Worgall, S., Guo, C.J., Schroeder, Frank C., Artis, D.
Nature.
611
:
578–584
View
CuGenDBv2: an updated database for cucurbit genomics.
2022.
Yu, J., Wu, S., Sun, H., Wang, X., Tang, X., Guo, S., Zhang, Z., Huang, S., Xu, Y., Weng, Y., Mazourek, M., McGregor, C., Renner, S.S., Branham, S., Kousik, C., Wechter, W.P., Levi, A., Grumet, R., Zheng, Y., Fei, Zhangjun
Nucleic Acids Res..
51
:
D1457–D1464
View
Polerovirus N-terminal readthrough domain structures reveal molecular strategies for mitigating virus transmission by aphids.
2022.
Schiltz, C.J., Wilson, J.R., Hosford, C.J., Adams, M.C., Preising, S.E., DeBlasio, S.L., MacLeod, H.J., Van Eck, Joyce, Heck, M.L., Chappie, J.S.
Nat Commun..
13
:
6368
View
Rewiring of the protein-protein-metabolite interactome during the diauxic shift in yeast.
2022.
Schlossarek, D., Luzarowski, M., Sokołowska, E.M., Thirumalaikumar, V.P., Dengler, L., Willmitzer, L., Ewald, J.C., Skirycz, Aleksandra
Cell Mol Life Sci..
79
:
550
View
Parallel pathways for serotonin biosynthesis and metabolism in C. elegans.
2022.
Yu, J., Vogt, M.C., Fox, B.W., Wrobel, C.J.J., Fajardo Palomino, D., Curtis, B.J., Zhang, B., Le, H.H., Tauffenberger, A., Hobert, O., Schroeder, Frank C.
Nat Chem Biol..
19
:
141–150
View
Evolutionary analysis of the LORELEI gene family in plants reveals regulatory subfunctionalization.
2022.
Noble, J.A., Bielski, N.V., Liu, M.J., DeFalco, T.A., Stegmann, M., Nelson, Andrew D.L., McNamara, K., Sullivan, B., Dinh, K.K., Khuu, N., Hancock, S., Shiu, S.H., Zipfel, C., Cheung, A.Y., Beilstein, M.A., Palanivelu, R.
Plant Physiol..
190
:
2539–2556
View
Re-evaluating the Systematics of Dendrolycopodium Using Restriction-Site Associated DNA-Sequencing.
2022.
Petlewski, A.R., Hauser, D.A., Kim, M., Schmutz, J., Grimwood, J., Li, Fay-Wei
Front Plant Sci..
13
:
912080
View
Loss of function of the bHLH transcription factor Nrd1 in tomato enhances resistance to Pseudomonas syringae
2022.
Zhang, N., Hecht, C., Sun, X., Fei, Zhangjun, Martin, Gregory B.
Plant Physiol..
190
:
1334–1348
View
Nostoc talks back: Temporal patterns of differential gene expression during establishment of the Anthoceros-Nostoc symbiosis.
2022.
Chatterjee, P., Schafran, P., Li, Fay-Wei, Meeks, J.C.
Mol Plant Microbe Interact..
35
:
917–932
View
High-Throughput Evolutionary Comparative Analysis of Long Intergenic Noncoding RNAs in Multiple Organisms
2022.
Nelson Dittrich, A.C., Nelson, Andrew D.L.
Methods Mol Biol..
2512
:
45–60
View
Laser capture of tomato pericarp tissues for microscale carotenoid analysis by supercritical fluid chromatography.
2022.
Ramsey, J.S., Fish, T.L., Thannhauser, T.W., Giovannoni, James J.
Methods Enzymol..
670
:
213–233
View
Systematics and Plastome Evolution in Schizaeaceae.
2022.
Ke, B.F., Wang, G.J., Labiak, P.H., Rouhan, G., Chen, C.W., Shepherd, L.D., Ohlsen, D.J., Renner, M.A.M., Karol, K.G., Li, Fay-Wei, Kuo, L.Y.
Front Plant Sci..
13
:
885501
View
AIG2A and AIG2B limit the activation of salicylic acid-regulated defenses by tryptophan-derived secondary metabolism in Arabidopsis.
2022.
Wang, Z., Yang, L., Jander, Georg, Bhawal, R., Zhang, S., Liu, Z., Oakley, A., Hua, J.
Plant Cell.
34
:
4641–4660
View
Distinct ankyrin repeat subdomains control VAPYRIN locations and intracellular accommodation functions during arbuscular mycorrhizal symbiosis.
2022.
Lindsay, P.L., Ivanov, S., Pumplin, N., Zhang, X., Harrison, Maria J.
Nat Commun..
13
:
5228
View
Selection pressure on the rhizosphere microbiome can alter nitrogen use efficiency and seed yield in Brassica rapa
2022.
Garcia, J., Gannett, M., Wei, L., Cheng, L., Hu, S., Sparks, J., Giovannoni, James J., Kao-Kniffin, J.
Commun Biol..
5
:
959
View
OPDA, more than just a jasmonate precursor.
2022.
Jimenez Aleman, G.H., Thirumalaikumar, V.P., Jander, Georg, Fernie, A.R., Skirycz, Aleksandra
Phytochemistry.
:
View
Dynamic genome evolution in a model fern.
2022.
Marchant, D.B., Chen, G., Cai, S., Chen, F., Schafran, P., Jenkins, J., Shu, S., Plott, C., Webber, J., Lovell, J.T., He, G., Sandor, L., Williams, M., Rajasekar, S., Healey, A., Barry, K., Zhang, Y., Sessa, E., Dhakal, R.R., Wolf, P.G., Harkess, A., Li, Fay-Wei, Rössner, C., Becker, A., Gramzow, L., Xue, D., Wu, Y., Tong, T., Wang, Y., Dai, F., Hua, S., Wang, H., Xu, S., Xu, F., Duan, H., Theißen, G., McKain, M.R., Li, Z., McKibben, M.T.W., Barker, M.S., Schmitz, R.J., Stevenson, D.W., Zumajo-Cardona, C., Ambrose, B.A., Leebens-Mack, J.H., Grimwood, J., Schmutz, J., Soltis, P.S., Soltis, D.E., Chen, Z.H.
Nat Plants..
8
:
1038–1051
View
Spatiotemporal dynamics of the tomato fruit transcriptome under prolonged water stress.
2022.
Nicolas, P., Shinozaki, Y., Powell, A., Philippe, G., Snyder, S.I., Bao, K., Zheng, Y., Xu, Y., Courtney, L., Vrebalov, J., Casteel, C.L., Mueller, Lukas A., Fei, Zhangjun, Giovannoni, James J., Rose, J.K.C., Catalá, Carmen
Plant Physiol..
:
View
Rapid growth of Moso bamboo (Phyllostachys edulis): Cellular roadmaps, transcriptome dynamics, and environmental factors
2022.
Chen, M., Guo, L., Ramakrishnan, M., Fei, Zhangjun., Vinod, K.K., Ding, Y., Jiao, C., Gao, Z., Zha, R., Wang, C., Gao, Z., Yu, F., Ren, G., Wei, Q.
The Plant Cell.
34
:
3577–3610
View
Cellular differentiation, hormonal gradient, and molecular alternation between the division zone and the elongation zone of bamboo internodes
2022.
Guo, L., Wang, C., Chen, J., Ju, Y., Yu, F., Jiao, C., Fei, Zhangjun, Ding, Y., Wei, Q.
Physiologia Plantarum.
174
:
e13744
View
An apple somatic mutation of delayed fruit maturation date is primarily caused by a retrotransposon insertion-associated large deletion
2022.
Ban, S., El-Sharkawy, I., Zhao, J., Fei, Zhangjun, Xu, K.
The Plant Journal.
111
:
1609–1625
View
Removing systemic barriers to equity, diversity, and inclusion: Report of the 2019 Plant Science Research Network workshop “Inclusivity in the Plant Sciences”
2022.
Henkhaus. N.A., Busch, W., Chen, A., Colón-Carmona, A., Cothran, M., Diaz, N., Dundore-Arias, J.P., Gonzales, M., Hadziabdic, D., Hayes, R.A., MacIntosh, G.C., Na, A., Nyamasoka-Magonziwa, B., Pater, D., Peritore-Galve, F.C., Phelps-Durr, T., Rouhier, K., Sickler, D.B., Starnes, J.H., Tyler, Q.R., Valdez-Ward, E., Vega-Sánchez. M.E., Walcott, R.R., Ward, J.K., Wyat,t S.E., Zapata, F., Zemenick, A.T., Stern, David
Plant Direct.
6
:
View
Copper starvation induces antimicrobial isocyanide integrated into two distinct biosynthetic pathways in fungi
2022.
Won, T.H., Bok, J.W., Nadig, N., Venkatesh, N., Nickle,s G., Grecom C., Lim, F.Y., González, J.B., Turgeon, B.G., Keller, N.P., Schroeder, Frank
Nature Communications.
13(1)
:
View
Genome Sequencing of up to 6,000-Year-Old Citrullus Seeds Reveals Use of a Bitter-Fleshed Species Prior to Watermelon Domestication
2022.
Pérez-Escobar, O.A., Tusso, S., Przelomska, N.A.S., Wu, S., Ryan, P., Nesbitt, M., Silber, M.V., Preick, M., Fei, Zhangjun, Hofreiter, M., Chomicki, G., Renner, S.S.
Molecular Biology and Evolution.
39
:
View
Long-Term Lacticaseibacillus rhamnosus GG Storage at Ambient Temperature in Vegetable Oil: Viability and Functional Assessments
2022.
Davachi, S.M., Dogan, B., Khazdooz, L., Zhang, S., Khojastegi, A., Fei, Zhangjun, Sun, H., Meletharayil, G., Kapoor, R., Simpson, K.W., Abbaspourrad, A.
Journal of Agricultural and Food Chemistry.
70
:
9399–9411
View
C. elegans as a model for inter-individual variation in metabolism
2022.
Fox, B.W., Ponomarova, O., Lee, Y.U., Zhang, G., Giese, G.E., Walker, M., Roberto, N.M., Na, H., Rodrigues, P.R., Curtis, B.J., Kolodziej, A.R., Crombie, T.A., Zdraljevic, S., Yilmaz, L.S., Andersen, E.C., Schroeder, Frank, Walhout, A.J.M.
Nature.
607
:
571–577
View
The diversity of quinoa morphological traits and seed metabolic composition
2022.
Tabatabaei, I., Alseekh, S., Shahid, M., Leniak, E., Wagner, M., Mahmoudi, H., Thushar, S., Fernie, A.R., Murphy, K.M., Schmöckel, S.M., Tester, M., Mueller-Roeber, B., Skirycz, Aleksandra, Balazadeh, S.
Sci Data.
9
:
323
View
A Conserved Long Intergenic Non-coding RNA Containing snoRNA Sequences, lncCOBRA1, Affects Arabidopsis Germination and Development.
2022.
Kramer, M.C., Kim, H.J., Palos, K.R., Garcia, B.A., Lyons, E., Beilstein, M.A., Nelson, Andrew D.L., Gregory, B.D.
Front Plant Sci..
13
:
View
The emerging role of PP2C phosphatases in tomato immunity.
2022.
Sobol, G., Chakraborty, J., Martin, Gregory B., Sessa, G.
Mol Plant Microbe Interact..
:
View
Chromosome-scale genome assemblies of wild tomato relatives Solanum habrochaites and Solanum galapagense reveal structural variants associated with stress tolerance and terpene biosynthesis
2022.
Yu, X., Qu, M., Shi, Y., Hao, C., Guo, S., Fei, Zhangjun, Gao, L.
Horticulture Research.
9
:
View
Dynamic plastid and mitochondrial genomes in Chaetopeltidales (Chlorophyceae) and characterization of a new chlorophyte taxon.
2022.
Robison, T., Nelson, J.M., Hauser, D.A., Lewis, L.A., Li, Fay-Wei
Am J Bot..
:
View
Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae.
2022.
Palos, K., Nelson Dittrich, A.C., Yu, L., Brock, J.R., Railey, C.E., Wu, H.L., Sokolowska, E., Skirycz, Aleksandra, Hsu, P.Y., Gregory, B.D., Lyons, E., Beilstein, M.A., Nelson, Andrew D.L.
Plant Cell..
:
View
Current status and impending progress for cassava structural genomics.
2022.
Lyons, J.B., Bredeson, J.V., Mansfeld, B.N., Bauchet, G.J., Berry, J., Boyher, A., Mueller, Lukas A., Rokhsar, D.S., Bart, R.S.
Plant Mol Biol..
109
:
177–191
View
Genome sequence for the blue-flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae.
2022.
Powell, A.F., Zhang, J., Hauser, D., Vilela, J.A., Hu, A., Gates, D.J., Mueller, Lukas A., Li, Fay-Wei, Strickler, S.R., Smith, S.D.
Plant Genome.
15
:
e20223
View
Graph pangenome captures missing heritability and empowers tomato breeding.
2022.
Zhou, Y., Zhang, Z., Bao, Z., Li, H., Lyu, Y., Zan, Y., Wu, Y., Cheng, L., Fang, Y., Wu, K., Zhang, J., Lyu, H., Lin, T., Gao, Q., Saha, S., Mueller, Lukas A., Fei, Zhangjun, Städler, T., Xu, S., Zhang, Z., Speed, D., Huang, S.
Nature.
606
:
527–534
View
Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance
2022.
Cao, K., Peng, Z., Zhao, X., Li, Y., Liu, K., Arus, P., Fang, W., Chen, C., Wang, X., Wu, J., Fei, Zhangjun , Wang, L.
BMC Biology.
20(1)
:
View
Genomic insights into the origin, adaptive evolution, and herbicide resistance of Leptochloa chinensis, a devastating tetraploid weedy grass in rice fields
2022.
Wang, L., Sun, X., Peng, Y., Chen, K., Wu, S., Guo, Y., Zhang, J., Yang, H., Jin, T., Wu, L., Zhou, X., Liang, B., Zhao, Z., Liu, D., Fei, Zhangjun, Bai, L.
15
:
1045–1058
View
Combined nature and human selections reshaped peach fruit metabolome
2022.
Cao, K., Wang, B., Fang, W., Zhu, G., Chen, C., Wang, X., Li, Y., Wu, J., Tang, T., Fei, Zhangjun, Luo, J., Wang, L.
Genome Biology.
23(1)
:
View
Mucosal metabolites fuel the growth and virulence of E. coli linked to Crohn’s disease
2022.
Zhang, S., Morgan, X., Dogan, B., Martin, F.P., Strickler, S., Oka, A., Herzog, J., Liu, B., Dowd, S.E., Huttenhower, C., Pichaud, M., Dogan, E.I., Satsangi, J., Longman, R., Yantiss, R., Mueller, Lukas A., Scherl, E.J., Sartor, R.B., Simpson, K.W.
JCI Insight.
7
:
View
Identification of Cellular Genes Involved in Baculovirus GP64 Trafficking to the Plasma Membrane
2022.
Hodgson, J.J., Buchon, N., Blissard, Gary W.
J Virol..
96
:
e0021522
View
Dynamically expressed small RNAs, substantially driven by genomic structural variants, contribute to transcriptomic changes during tomato domestication
2022.
Qing, Y., Zheng, Y., Mlotshwa, S., Smith, H.N., Wang, X., Zhai, X., van der Knaap, E., Wang, Y., Fei, Zhangjun
The Plant Journal.
110
:
1536–1550
View
Insects Co-opt Host Genes to Overcome Plant Defences
2022.
Edwards, O., Jander, Georg, Ochman, H., Schuurink, R., Singh, K.B.
Fac Rev..
11
:
View
The tomato yellow leaf curl virus C4 protein alters the expression of plant developmental genes correlating to leaf upward cupping phenotype in tomato.
2022.
Padmanabhan, C., Zheng, Y., Shamimuzzaman, M., Wilson, J.R., Gilliard, A., Fei, Zhangjun, Ling, K.S.
PLoS One.
17
:
e0257936
View
Editorial overview: Plant biotechnology
2022.
Negrão, S., Julkowska, Magdalena
Curr Opin Biotechnol. `.
10
:
102733
View
The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence.
2022.
Huang, X., Wang, W., Gong, T., Wickell, D., Kuo, L.Y., Zhang, X., Wen, J., Kim, H., Lu, F., Zhao, H., Chen, S., Li, H., Wu, W., Yu, C., Chen, S., Fan, W., Chen, S., Bao, X., Li, L., Zhang, D., Jiang, L., Yan, X., Liao, Z., Zhou, G., Guo, Y., Ralph, J., Sederoff, R.R., Wei, H., Zhu, P., Li, Fay-Wei, Ming, R., Li, Q.
Nat Plants..
8
:
500–512
View
A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator.
2022.
Zhu, F., Jadhav, S.S., Tohge, T., Salem, M.A., Li, J.M., Giovannoni, James J., Cheng, Y., Alseekh, S., Fernie, A.R.
Plant Physiol..
190
:
250–266
View
CEST-2.2 overexpression alters lipid metabolism and extends longevity of mitochondrial mutants
2022.
Piazzesi, A., Wang, Y., Jackson, J., Wischhof, L., Zeisler-Diehl, V., Scifo, E., Oganezova, I., Hoffmann, T., Gómez, M.P., Bertan, F., Wrobel, C.J.J., Schroeder, Frank, Ehninger, D., Händler, K., Schultze, J.L., Schreiber, L., van Echten-Deckert, G., Nicotera, P., Bano, D.
EMBO Reports.
:
View
Dynamic evolution of small signalling peptide compensation in plant stem cell control
2022.
Kwon, C.T., Tang, L., Wang, X., Gentile, I., Hendelman, A., Robitaille, G., Van Eck, Joyce, Xu, C., Lippman, Z.B.
Nat Plants..
8
:
346–355
View
Lessons learned about the biology and genomics of Diaphorina citri infection with “Candidatus Liberibacter asiaticus” by integrating new and archived organ-specific transcriptome data
2022.
Mann, M., Saha, S., Cicero, J.M., Pitino, M., Moulton, K., Hunter, W.B., Cano, L.M., Mueller, Lukas A., Heck, M.
Gigascience.
11
:
1–16
View
Characterizing Culturable Bacterial Endophytes of Five Lycopodiaceae Species
2022.
Petlewski, A.R., Patterson, A., Li, Fay-Wei
American Fern Journal.
112
:
79–92
View
Genome Skimming Contributes to Clarifying Species Limits in Paris Section Axiparis (Melanthiaceae).
2022.
Ji, Y., Yang, J., Landis, J.B., Wang, S., Jin, L., Xie, P., Liu, H., Yang, J.B., Yi, T.S.
Front Plant Sci..
13
:
832034
View
A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity.
2022.
Powell, A.F., Feder, A., Li, J., Schmidt, M.H., Courtney, L., Alseekh, S., Jobson, E.M., Vogel, A., Xu, Y., Lyon, D., Dumschott, K., McHale, M., Sulpice, R., Bao, K., Lal, R., Duhan, A., Hallab, A., Denton, A.K., Bolger, M.E., Fernie, A.R., Hind, S.R., Mueller, Lukas A., Martin, Gregory B., Fei, Zhangjun, Martin, C., Giovannoni, James J., Strickler, S.R., Usadel, B.
Plant J..
110
:
1791–1810
View
Accelerating gametophytic growth in the model hornwort Anthoceros agrestis
2022.
Gunadi, A., Li, Fay-Wei, Van Eck, Joyce
Applications in Plant Sciences.
10
:
e11460
View
Breedbase: a digital ecosystem for modern plant breeding.
2022.
Morales, N., Ogbonna, A.C., Ellerbrock, B.J., Bauchet, G.J., Tantikanjana, T., Tecle, I.Y., Powell, A.F., Lyon, D., Menda, N., Simoes, C.C., Saha, S., Hosmani, P., Flores, M., Panitz, N., Preble, R.S., Agbona, A., Rabbi, I., Kulakow, P., Peteti, P., Kawuki, R., Esuma, W., Kanaabi, M., Chelangat, D.M., Uba, E., Olojede, A., Onyeka, J., Shah, T., Karanja, M., Egesi, C., Tufan, H., Paterne, A., Asfaw, A., Jannink, J.L., Wolfe, M., Birkett, C.L., Waring, D.J., Hershberger, J.M., Gore, M.A., Robbins, K.R., Rife, T., Courtney, C., Poland, J., Arnaud, E., Laporte, M.A., Kulembeka, H., Salum, K., Mrema, E., Brown, A., Bayo, S., Uwimana, B., Akech, V., Yencho, C., de Boeck, B., Campos, H., Swennen, R., Edwards, J.D., Mueller, Lukas A.
G3.
12
:
View
Past accomplishments and future challenges of the multi-omics characterization of leaf growth.
2022.
Skirycz, Aleksandra, Fernie, A.R.
Plant Physiol..
:
View
Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood)
2022.
Saha, S, Allen, K.C., Mueller, Lukas A., Reddy, G.V.P., Perera, O.P.
BMC Res Notes..
15
:
115
View
Seminars in cell and development biology on histone variants remodelers of H2A variants associated with heterochromatin
2022.
Berger, F., Muegge, K., Richards, Eric Jean
Semin Cell Dev Biol..
S1084-9521
:
00065-9
View
A genetically encoded biosensor reveals spatiotemporal variation in cellular phosphate content in Brachypodium distachyon mycorrhizal roots
2022.
Zhang, S., Daniels, D.A., Ivanov, S., Jurgensen, L., Müller, L.M., Versaw, W.K., Harrison, Maria J.
New Phytologist.
:
View
Regulation of Plant Primary Metabolism–How Results From Novel Technologies Are Extending Our Understanding From Classical Targeted Approaches
2022.
Skirycz, Aleksandra, Caldana, C., Fernie, A.R.
Critical Reviews in Plant Sciences.
:
View
A Mathematical Framework for Analyzing Wild Tomato Root Architecture
2022.
Chandrasekhar, A., Julkowska, Magdalena
Journal of Computational Biology.
29
:
306–316
View
Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber
2022.
Li, H., Wang, S., Chai, S., Yang, Z., Zhang, Q., Xin, H., Xu, Y., Lin, S., Chen, X., Yao, Z., Yang, Q., Fei, Zhangjun, Huang, S., Zhang, Z.
Nature Communications.
13
:
View
Nematode ascarosides attenuate mammalian type 2 inflammatory responses
2022.
Shinoda, K., Choe, A., Hiraharam K,, Kiuchim M,, Kokubom K,, Ichikawam T,, Hokim J,S,, Suzuki, A.S., Bose, N., Appleton, J.A., Aroian, R.V., Schroeder, Frank, Sternberg, P.W., Nakayama, T.
Proceedings of the National Academy of Sciences.
119
:
View
Comparative metabolomics with Metaboseek reveals functions of a conserved fat metabolism pathway in C. elegans
2022.
Helf, M.J., Fox, B.W., Artyukhin, A.B., Zhang, Y.K., Schroeder, Frank
Nature Communications.
13
:
View
Formation and Function of Dauer Ascarosides in the Nematodes Caenorhabditis briggsae and Caenorhabditis elegans
2022.
Cohen, S.M., Wrobel, C.J.J., Prakash, S.J., Schroeder, Frank, Sternberg, P.W.
G3: Genes, Genomes, Genetics.
12
:
jkac014
View
Illuminating the lineage-specific diversification of resin glycoside acylsugars in the morning glory (Convolvulaceae) family using computational metabolomics
2022.
Kruse, L.H., Bennett, A.A., Mahood, E.H., Lazarus, E., Park, S.J., Schroeder, Frank, Moghe, G.D.
Horticulture Research.
:
View
AtTIP2;2 facilitates resistance to zinc toxicity via promoting zinc immobilization in the root and limiting root-to-shoot zinc translocation in Arabidopsis thaliana
2022.
Wang, Y., Kang, Y., Yu, W., Lyi, S.M., Choi, H.W., Xiao, E., Li, L., Klessig, Daniel F., Liu, J.
Ecotoxicol Environ Saf..
233
:
View
Step-by-step protocol for the isolation and transient transformation of hornwort protoplasts
2022.
Neubauer, A., Ruaud, S., Waller, M., Frangedakis, E., Li, Fay-Wei, Nötzold, S.I., Wicke, S., Bailly, A., Szövényi, P.
Applications in Plant Sciences.
10
:
e11456
View
Phylogeography and population genetics reveal ring species patterns in a highly polymorphic California lily
2022.
Hernandez, A.I., Landis, J.B., Specht, C.D.
Journal of Biogeography.
:
View
Phylogenomic analyses of the East Asian endemic Abelia (Caprifoliaceae) she insights into the temporal and spatial diversification history with widespread hybridization
2022.
Sun, Q.H., Morales-Briones, D.F., Wang, H.X., Landis, J.B., Wen, J., Wang, H.F.
Annals of Botany.
129
:
201–216
View
KIN3 impacts arbuscular mycorrhizal symbiosis and promotes fungal colonisation in Medicago truncatula
2022.
Irving, T.B., Chakraborty, S., Ivanov, S., Schultze, M., Mysore, K.S., Harrison, Maria J., Ané, J.M.
Plant J..
110
:
513–528
View
SlERF. F12 modulates the transition to ripening in tomato fruit by recruiting the co-repressor Topless and histone deacetylases to repress key ripening genes
2022.
Deng, H., Chen, Y., Liu, Z., Liu, Z., Shu, P., Wang, R., Hao, Y., Su, D., Pirrello, J., Liu, Y., Li, Z., Grierson, D., Giovannoni, James, J., Bouzayen, M., Liu, M.
The Plant Cell.
:
View
A manipulation of carotenoid metabolism influence biomass partitioning and fitness in tomato
2022.
Mi, J., Vallarino, J.G., Petřík, I., Novák, O., Correa, S.M., Chodasiewicz, M., Havaux, M., Rodriguez-Concepcion, M., Al-Babili, S., Fernie, A.R., Skirycz, Aleksandra, Moreno, J.C.
Metab Eng..
70
:
166–180
View
2′,3′-cAMP treatment mimics the stress molecular response in Arabidopsis thaliana
2022.
Chodasiewicz, M., Kerber, O., Gorka, M., Moreno, J.C., Maruri-Lopez, I., Minen, R.I., Sampathkumar, A., Nelson, Andrew D.L., Skirycz, Aleksandra
Plant Physiol..
:
View
The edge of the nucleus: Variations on a theme
2022.
Choi, J., Richards, Eric Jean
Dev Cell..
57
:
3–4
View
Characterizing serotonin biosynthesis in Setaria viridis leaves and its effect on aphids
2022.
Dangol, A., Shavit, R., Yaakov, B., Strickler, S.R., Jander, Georg, Tzin , V.
Plant Mol Biol.
109
:
533–549
View
The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells
2022.
Simeoni, F., Skirycz, Aleksandra, Simoni, L., Castorina, G., de Souza, L.P., Fernie, A.R., Alseekh, S., Giavalisco, P., Conti, L., Tonelli, C., Galbiati, M.
Sci Rep.
12
:
533
View
The Role of Triacylglycerol in the Protection of Cells Against Lipotoxicity Under Drought in Lolium multiflorum/Festuca arundinacea Introgression Forms.
2022.
Perlikowski, D., Lechowicz, K., Skirycz, Aleksandra, Michaelis, Ä., Pawłowicz, I., Kosmala, A.
Plant Cell Physiol..
pcac003
:
View
Neuronal KGB-1 JNK MAPK signaling regulates the dauer developmental decision in response to environmental stress in C. elegans
2022.
Dogra, D., Kulalert, W., Schroeder, Frank, Kim, D.H.
Genetics.
220
:
iyab186
View
The Physalis Improvement Project: blending research with community science: How community science can advance research.
2022.
Van Eck, Joyce
EMBO Rep..
23
:
e53918
View
Rapid Screening of Myzus persicae (Green Peach Aphid) RNAi Targets Using Tobacco Rattle Virus.
2022.
Feng, H., Jander, Georg
Methods Mol Biol..
2360
:
105–117
View
Inhibition of Rhopalosiphum maidis (Corn Leaf Aphid) Growth on Maize by Virus-Induced Gene Silencing with Sugarcane Mosaic Virus.
2022.
Chung, S.H., Jander, Georg
Methods Mol Biol..
2360
:
139–153
View
Molecular ecology of plant volatiles in interactions with insect herbivores.
2022.
Zhou, S., Jander, Georg
J Exp Bot..
73
:
449–462
View
Phenolic sucrose esters: evolution, regulation, biosynthesis, and biological functions
2022.
Deng, R., Li, W., Berhow, M.A., Jander, Georg, Zhou, S.
Plant Molecular Biology.
109
:
369–383
View
Ground tissue circuitry regulates organ complexity in maize and Setaria
2021.
Ortiz-Ramírez, C., Guillotin, B., Xu, X., Rahni, R., Zhang, S., Yan, Z., Coqueiro Dias Araujo. P,, Demesa-Arevalo, E., Lee, L., Van Eck, Joyce, Gingeras, T.R.,, Jackson, D., Gallagher, K.L., Birnbaum, K.D.
Science.
374
:
1247–1252
View
Transcriptome Analysis of Melocactus glaucescens (Cactaceae) Reveals Metabolic Changes During in vitro Shoot Organogenesis Induction
2021.
Torres-Silva, G., Correia, L.N.F., Batista, D.S., Koehler, S.V., Resende, A.D. , Romanel, E., Cassol, D., Almeida, A.M.R., Strickler, S.R., Specht, C.D.
Frontiers in Plant Science.
12
:
View
Comparative analysis of chloroplast genome structure and molecular dating in Myrtales
2021.
Zhang, X.F., Landis, J.B., Wang, H.X., Zhu, Z.H., Wang, H.F.
BMC Plant Biology.
21
:
View
Plastome structure and phylogenetic relationships of Styracaceae (Ericales).
2021.
Cai, X., Landis, J.B., Wang, H.X., Wang, J.H., Zhu, Z.X., Wang, H.F.
BMC Ecology and Evolution.
21
:
View
Transcriptomes of Saussurea (Asteraceae) provide insights into high-altitude adaptation
2021.
Zhang, X., Sun, Y., Landis, J.B., Shen, J., Zhang, H., Feng, T., Kuang, T., Sun, W., Sun, J., Tiamiyu, B.B., Deng, T., Sun, H.
Plants.
10
:
View
Extinction risk in vascular plants and vertebrates is negatively correlated with family size
2021.
Fu, Q., Huang, X., Landis, J.B., Liu, P., Li, L., Lv, Z., Chen, J., Wang, H., Chen, J., Jiang, X., Jin, Y., Sun, H., Deng, T.
Global Ecology and Conservation.
30
:
View
Macroevolutionary pattern of Saussurea (Asteraceae) provides insights into the drivers of radiating diversification
2021.
Zhang, X., Landis, J.B., Sun, Y., Zhang, H., Feng, T., Lin, N., Tiamiyu, B., Huang, X., Deng, T., Wang, H., Sun, H.
Proceedings of the Royal Society B.
288
:
View
Nuclear and plastid phylogenomic analyses provide insights into the reticulate evolution, species delimitation and biogeography of the Sino-Japanese disjunctive Diabelia (Caprifoliaceae)
2021.
Ke, X.R., Morales-Briones, D.F., Wang, H.X., Sun, Q.H., Landis, J.B., Wen, J., Wang, H.F.
Journal of Systematics and Evolution.
:
View
Phylogenomic and comparative analyses of Rheum (Polygonaceae, Polygonoideae)
2021.
Zhang, H., Zhang, X., Landis, J.B., Sun, ., Deng, T., Sun, H., Wang, H.
Journal of Systematics and Evolution.
:
View
Phytohormones in fruit development and maturation
2021.
Fenn, M.A., Giovannoni, James J.
Plant J..
105
:
446–458
View
Combination of network and molecule structure accurately predicts competitive inhibitory interactions
2021.
Razaghi-Moghadam, Z., Sokolowska, E.M., Sowa, M.A., Skirycz, Aleksandra, Nikoloski, Z.
Comput Struct Biotechnol J..
19
:
2170–2178
View
Indole-3-glycerolphosphate synthase, a branchpoint for the biosynthesis of tryptophan, indole, and benzoxazinoids in maize
2021.
Richter, A., Powell, A.F., Mirzaei, M., Wang, L.J., Movahed, N., Miller, J.K., Piñeros, M.A., Jander, Georg
Plant J..
106
:
245–257
View
Comprehensive genotyping of a Brazilian cassava (Manihot esculenta Crantz) germplasm bank: insights into diversification and domestication.
2021.
Ogbonna, A.C., Braatz de Andrade, L.R., Mueller, Lukas A., de Oliveira, E.J., Bauchet, G.J.
Theor Appl Genet..
134
:
1343–1362
View
Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana
2021.
Calderan-Rodrigues, M.J. Luzarowski, M., Monte-Bello, C.C., Minen, R.I., Zühlke, B.M., Nikoloski, Z., Skirycz, Aleksandra, Caldana, C.
Front Plant Sci..
12
:
758933
View
Integrative Proteomic and Phosphoproteomic Analyses of Pattern- and Effector-Triggered Immunity in Tomato
2021.
Yu, J., Gonzalez, J.M., Dong, Z., Shan, Q., Tan, B., Koh, J., Zhang, T., Zhu, N., Dufresne, C., Martin, Gregory B., Chen, S.
Front Plant Sci..
12
:
768693
View
Can Cross-Country Genomic Predictions Be a Reasonable Strategy to Support Germplasm Exchange? – A Case Study With Hydrogen Cyanide in Cassava
2021.
Torres, L.G., de Oliveira, E.J., Ogbonna, A.C., Bauchet, G.J., Mueller, Lukas A., Azevedo, C.F., Silva, F.F.E., Simiqueli, G.F., de Resende, M.D.V.
Front Plant Sci..
12
:
742638
View
Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits
2021.
Cai, X., Sun, X., Xu, C., Sun, H., Wang, X., Ge, C., Zhang, Z., Wang, Q., Fei, Zhangjun, Jiao, C., Wang, Q.
Nat Commun..
12
:
7246
View
A population based expression atlas provides insights into disease resistance and other physiological traits in cassava (Manihot esculenta Crantz)
2021.
Ogbonna, A.C., Ramu, P., Esuma, W., Nandudu, L., Morales, N., Powell, A., Kawuki, R., Bauchet, G., Jannink, J.L., Mueller, Lukas A.
Sci Rep..
11
:
23520
View
Decolonizing botanical genomics
2021.
Li, Fay-Wei
Nat. Plants.
7
:
1542–1543
View
Interspecific Recombination Between Zucchini Tigre Mosaic Virus and Papaya Ringspot Virus Infecting Cucurbits in China
2021.
Peng, B., Liu, L., Wu, H., Kang, B., Fei, Zhangjun, Gu, Q.
Frontiers in Microbiology.
12
:
View
Bt Cry1Ac resistance in Trichoplusia ni is conferred by multi-gene mutations
2021.
Ma, X., Shao, E., Chen,W., Cotto-Rivera, R., Yang, W., Kain, W., Fei, Zhangjun, Wang, P.
Insect Biochemistry and Molecular Biology.
140
:
View
A systems genetics approach reveals PbrNSC as a regulator of lignin and cellulose biosynthesis in stone cells of pear fruit
2021.
Wang, R., Xue, Y., Fan, F., Yao, J., Qin, M., Lin, T., Lian, Q., Zhang, M., Li, X., Li, J., Sun, M., Song, B., Zhang, J., Zhao, K., Chen, X., Hu, H., Fei, Zhangjun, Xue, C., Wu, J.
Genome Biology.
22
:
View
Spelling Changes and Fluorescent Tagging With Prime Editing Vectors for Plants
2021.
Wang, L., Kaya, H. B., Zhang, N., Rai, R., Willmann, M. R., Carpenter, S., Read, A. C., Martin, F., Fei, Zhangjun, Leach, J. E., Martin, Gregory B., & Bogdanove, A. J.
Frontiers in Genome Editing.
3
:
View
Cellular and molecular characterizations of the irregular internode division zone formation of a slow growing bamboo variant
2021.
Gao, Z., Guo, L., Ramakrishnan, M., Xiang, Y., Jiao, C., Jiang, J., Vinod, K.K., Fei, Zhangjun, Que, F., Ding, Y., Yu, F., Chen, T., Wei, Q.
Tree Physiology.
:
View
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