Publications

The diversity of quinoa morphological traits and seed metabolic composition
2022.
Tabatabaei, I., Alseekh, S., Shahid, M., Leniak, E., Wagner, M., Mahmoudi, H., Thushar, S., Fernie, A.R., Murphy, K.M., Schmöckel, S.M., Tester, M., Mueller-Roeber, B., Skirycz, Aleksandra, Balazadeh, S.
Sci Data.
9
:
A Conserved Long Intergenic Non-coding RNA Containing snoRNA Sequences, lncCOBRA1, Affects Arabidopsis Germination and Development.
2022.
Kramer, M.C., Kim, H.J., Palos, K.R., Garcia, B.A., Lyons, E., Beilstein, M.A., Nelson, Andrew D.L., Gregory, B.D.
Front Plant Sci..
13
:
The emerging role of PP2C phosphatases in tomato immunity.
2022.
Sobol, G., Chakraborty, J., Martin, Gregory B., Sessa, G.
Mol Plant Microbe Interact..
:
Dynamic plastid and mitochondrial genomes in Chaetopeltidales (Chlorophyceae) and characterization of a new chlorophyte taxon.
2022.
Robison, T., Nelson, J.M., Hauser, D.A., Lewis, L.A., Li, Fay-Wei
Am J Bot..
:
Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae.
2022.
Palos, K., Nelson Dittrich, A.C., Yu, L., Brock, J.R., Railey, C.E., Wu, H.L., Sokolowska, E., Skirycz, Aleksandra, Hsu, P.Y., Gregory, B.D., Lyons, E., Beilstein, M.A., Nelson, Andrew D.L.
Plant Cell..
:
Current status and impending progress for cassava structural genomics.
2022.
Lyons, J.B., Bredeson, J.V., Mansfeld, B.N., Bauchet, G.J., Berry, J., Boyher, A., Mueller, Lukas A., Rokhsar, D.S., Bart, R.S.
Plant Mol Biol..
109
:
177–191
Genome sequence for the blue-flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae.
2022.
Powell, A.F., Zhang, J., Hauser, D., Vilela, J.A., Hu, A., Gates, D.J., Mueller, Lukas A., Li, Fay-Wei, Strickler, S.R., Smith, S.D.
Plant Genome.
:
Graph pangenome captures missing heritability and empowers tomato breeding.
2022.
Zhou, Y., Zhang, Z., Bao, Z., Li, H., Lyu, Y., Zan, Y., Wu, Y., Cheng, L., Fang, Y., Wu, K., Zhang, J., Lyu, H., Lin, T., Gao, Q., Saha, S., Mueller, Lukas A., Fei, Zhangjun, Städler, T., Xu, S., Zhang, Z., Speed, D., Huang, S.
Nature.
606
:
527–534
Mucosal metabolites fuel the growth and virulence of E. coli linked to Crohn’s disease
2022.
Zhang, S., Morgan, X., Dogan, B., Martin, F.P., Strickler, S., Oka, A., Herzog, J., Liu, B., Dowd, S.E., Huttenhower, C., Pichaud, M., Dogan, E.I., Satsangi, J., Longman, R., Yantiss, R., Mueller, Lukas A., Scherl, E.J., Sartor, R.B., Simpson, K.W.
JCI Insight.
7
:
Identification of Cellular Genes Involved in Baculovirus GP64 Trafficking to the Plasma Membrane
2022.
Hodgson, J.J., Buchon, N., Blissard, Gary W.
J Virol..
:
Insects Co-opt Host Genes to Overcome Plant Defences
2022.
Edwards, O., Jander, Georg, Ochman, H., Schuurink, R., Singh, K.B.
Fac Rev..
11
:
The tomato yellow leaf curl virus C4 protein alters the expression of plant developmental genes correlating to leaf upward cupping phenotype in tomato.
2022.
Padmanabhan, C., Zheng, Y., Shamimuzzaman, M., Wilson, J.R., Gilliard, A., Fei, Zhangjun, Ling, K.S.
PLoS One.
17
:
e0257936
Editorial overview: Plant biotechnology
2022.
Negrão, S., Julkowska, Magdalena
Curr Opin Biotechnol. `.
10
:
102733
The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence.
2022.
Huang, X., Wang, W., Gong, T., Wickell, D., Kuo, L.Y., Zhang, X., Wen, J., Kim, H., Lu, F., Zhao, H., Chen, S., Li, H., Wu, W., Yu, C., Chen, S., Fan, W., Chen, S., Bao, X., Li, L., Zhang, D., Jiang, L., Yan, X., Liao, Z., Zhou, G., Guo, Y., Ralph, J., Sederoff, R.R., Wei, H., Zhu, P., Li, Fay-Wei, Ming, R., Li, Q.
Nat Plants..
8
:
500–512
A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator.
2022.
Zhu, F., Jadhav, S.S., Tohge, T., Salem, M.A., Li, J.M., Giovannoni, James J., Cheng, Y., Alseekh, S., Fernie, A.R.
Plant Physiol..
:
CEST-2.2 overexpression alters lipid metabolism and extends longevity of mitochondrial mutants
2022.
Piazzesi, A., Wang, Y., Jackson, J., Wischhof, L., Zeisler-Diehl, V., Scifo, E., Oganezova, I., Hoffmann, T., Gómez, M.P., Bertan, F., Wrobel, C.J.J., Schroeder, Frank, Ehninger, D., Händler, K., Schultze, J.L., Schreiber, L., van Echten-Deckert, G., Nicotera, P., Bano, D.
EMBO Reports.
:
Dynamic evolution of small signalling peptide compensation in plant stem cell control
2022.
Kwon, C.T., Tang, L., Wang, X., Gentile, I., Hendelman, A., Robitaille, G., Van Eck, Joyce, Xu, C., Lippman, Z.B.
Nat Plants..
8
:
346–355
Lessons learned about the biology and genomics of Diaphorina citri infection with “Candidatus Liberibacter asiaticus” by integrating new and archived organ-specific transcriptome data
2022.
Mann, M., Saha, S., Cicero, J.M., Pitino, M., Moulton, K., Hunter, W.B., Cano, L.M., Mueller, Lukas A., Heck, M.
Gigascience.
11
:
1–16
Characterizing Culturable Bacterial Endophytes of Five Lycopodiaceae Species
2022.
Petlewski, A.R., Patterson, A., Li, Fay-Wei
American Fern Journal.
112
:
79–92
Genome Skimming Contributes to Clarifying Species Limits in Paris Section Axiparis (Melanthiaceae).
2022.
Ji, Y., Yang, J., Landis, J.B., Wang, S., Jin, L., Xie, P., Liu, H., Yang, J.B., Yi, T.S.
Front Plant Sci..
13
:
832034
A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity.
2022.
Powell, A.F., Feder, A., Li, J., Schmidt, M.H., Courtney, L., Alseekh, S., Jobson, E.M., Vogel, A., Xu, Y., Lyon, D., Dumschott, K., McHale, M., Sulpice, R., Bao, K., Lal, R., Duhan, A., Hallab, A., Denton, A.K., Bolger, M.E., Fernie, A.R., Hind, S.R., Mueller, Lukas A., Martin, Gregory B., Fei, Zhangjun, Martin, C., Giovannoni, James J., Strickler, S.R., Usadel, B.
Plant J..
:
Accelerating gametophytic growth in the model hornwort Anthoceros agrestis
2022.
Gunadi, A., Li, Fay-Wei, Van Eck, Joyce
Applications in Plant Sciences.
10
:
e11460
Breedbase: a digital ecosystem for modern plant breeding.
2022.
Morales, N., Ogbonna, A.C., Ellerbrock, B.J., Bauchet, G.J., Tantikanjana, T., Tecle, I.Y., Powell, A.F., Lyon, D., Menda, N., Simoes, C.C., Saha, S., Hosmani, P., Flores, M., Panitz, N., Preble, R.S., Agbona, A., Rabbi, I., Kulakow, P., Peteti, P., Kawuki, R., Esuma, W., Kanaabi, M., Chelangat, D.M., Uba, E., Olojede, A., Onyeka, J., Shah, T., Karanja, M., Egesi, C., Tufan, H., Paterne, A., Asfaw, A., Jannink, J.L., Wolfe, M., Birkett, C.L., Waring, D.J., Hershberger, J.M., Gore, M.A., Robbins, K.R., Rife, T., Courtney, C., Poland, J., Arnaud, E., Laporte, M.A., Kulembeka, H., Salum, K., Mrema, E., Brown, A., Bayo, S., Uwimana, B., Akech, V., Yencho, C., de Boeck, B., Campos, H., Swennen, R., Edwards, J.D., Mueller, Lukas A.
G3.
:
Past accomplishments and future challenges of the multi-omics characterization of leaf growth.
2022.
Skirycz, Aleksandra, Fernie, A.R.
Plant Physiol..
:
Chromosome length genome assembly of the redbanded stink bug, Piezodorus guildinii (Westwood)
2022.
Saha, S, Allen, K.C., Mueller, Lukas A., Reddy, G.V.P., Perera, O.P.
BMC Res Notes..
15
:
115
Seminars in cell and development biology on histone variants remodelers of H2A variants associated with heterochromatin
2022.
Berger, F., Muegge, K., Richards, Eric Jean
Semin Cell Dev Biol..
S1084-9521
:
00065-9
A genetically encoded biosensor reveals spatiotemporal variation in cellular phosphate content in Brachypodium distachyon mycorrhizal roots
2022.
Zhang, S., Daniels, D.A., Ivanov, S., Jurgensen, L., Müller, L.M., Versaw, W.K., Harrison, Maria J.
New Phytologist.
:
Regulation of Plant Primary Metabolism–How Results From Novel Technologies Are Extending Our Understanding From Classical Targeted Approaches
2022.
Skirycz, Aleksandra, Caldana, C., Fernie, A.R.
Critical Reviews in Plant Sciences.
:
A Mathematical Framework for Analyzing Wild Tomato Root Architecture
2022.
Chandrasekhar, A., Julkowska, Magdalena
Journal of Computational Biology.
29
:
306–316
Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber
2022.
Li, H., Wang, S., Chai, S., Yang, Z., Zhang, Q., Xin, H., Xu, Y., Lin, S., Chen, X., Yao, Z., Yang, Q., Fei, Zhangjun, Huang, S., Zhang, Z.
Nature Communications.
13
:
Nematode ascarosides attenuate mammalian type 2 inflammatory responses
2022.
Shinoda, K., Choe, A., Hiraharam K,, Kiuchim M,, Kokubom K,, Ichikawam T,, Hokim J,S,, Suzuki, A.S., Bose, N., Appleton, J.A., Aroian, R.V., Schroeder, Frank, Sternberg, P.W., Nakayama, T.
Proceedings of the National Academy of Sciences.
119
:
Comparative metabolomics with Metaboseek reveals functions of a conserved fat metabolism pathway in C. elegans
2022.
Helf, M.J., Fox, B.W., Artyukhin, A.B., Zhang, Y.K., Schroeder, Frank
Nature Communications.
13
:
Formation and Function of Dauer Ascarosides in the Nematodes Caenorhabditis briggsae and Caenorhabditis elegans
2022.
Cohen, S.M., Wrobel, C.J.J., Prakash, S.J., Schroeder, Frank, Sternberg, P.W.
G3: Genes, Genomes, Genetics.
12
:
jkac014
Illuminating the lineage-specific diversification of resin glycoside acylsugars in the morning glory (Convolvulaceae) family using computational metabolomics
2022.
Kruse, L.H., Bennett, A.A., Mahood, E.H., Lazarus, E., Park, S.J., Schroeder, Frank, Moghe, G.D.
Horticulture Research.
:
AtTIP2;2 facilitates resistance to zinc toxicity via promoting zinc immobilization in the root and limiting root-to-shoot zinc translocation in Arabidopsis thaliana
2022.
Wang, Y., Kang, Y., Yu, W., Lyi, S.M., Choi, H.W., Xiao, E., Li, L., Klessig, Daniel F., Liu, J.
Ecotoxicol Environ Saf..
233
:
Step-by-step protocol for the isolation and transient transformation of hornwort protoplasts
2022.
Neubauer, A., Ruaud, S., Waller, M., Frangedakis, E., Li, Fay-Wei, Nötzold, S.I., Wicke, S., Bailly, A., Szövényi, P.
Applications in Plant Sciences.
10
:
e11456
Phylogeography and population genetics reveal ring species patterns in a highly polymorphic California lily
2022.
Hernandez, A.I., Landis, J.B., Specht, C.D.
Journal of Biogeography.
:
Phylogenomic analyses of the East Asian endemic Abelia (Caprifoliaceae) she insights into the temporal and spatial diversification history with widespread hybridization
2022.
Sun, Q.H., Morales-Briones, D.F., Wang, H.X., Landis, J.B., Wen, J., Wang, H.F.
Annals of Botany.
129
:
201–216
KIN3 impacts arbuscular mycorrhizal symbiosis and promotes fungal colonisation in Medicago truncatula
2022.
Irving, T.B., Chakraborty, S., Ivanov, S., Schultze, M., Mysore, K.S., Harrison, Maria J., Ané, J.M.
Plant J..
110
:
513–528
SlERF. F12 modulates the transition to ripening in tomato fruit by recruiting the co-repressor Topless and histone deacetylases to repress key ripening genes
2022.
Deng, H., Chen, Y., Liu, Z., Liu, Z., Shu, P., Wang, R., Hao, Y., Su, D., Pirrello, J., Liu, Y., Li, Z., Grierson, D., Giovannoni, James, J., Bouzayen, M., Liu, M.
The Plant Cell.
:
A manipulation of carotenoid metabolism influence biomass partitioning and fitness in tomato
2022.
Mi, J., Vallarino, J.G., Petřík, I., Novák, O., Correa, S.M., Chodasiewicz, M., Havaux, M., Rodriguez-Concepcion, M., Al-Babili, S., Fernie, A.R., Skirycz, Aleksandra, Moreno, J.C.
Metab Eng..
70
:
166–180
2′,3′-cAMP treatment mimics the stress molecular response in Arabidopsis thaliana
2022.
Chodasiewicz, M., Kerber, O., Gorka, M., Moreno, J.C., Maruri-Lopez, I., Minen, R.I., Sampathkumar, A., Nelson, Andrew D.L., Skirycz, Aleksandra
Plant Physiol..
:
The edge of the nucleus: Variations on a theme
2022.
Choi, J., Richards, Eric Jean
Dev Cell..
57
:
3–4
Characterizing serotonin biosynthesis in Setaria viridis leaves and its effect on aphids
2022.
Dangol, A., Shavit, R., Yaakov, B., Strickler, S.R., Jander, Georg, Tzin , V.
Plant Mol Biol.
:
The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells
2022.
Simeoni, F., Skirycz, Aleksandra, Simoni, L., Castorina, G., de Souza, L.P., Fernie, A.R., Alseekh, S., Giavalisco, P., Conti, L., Tonelli, C., Galbiati, M.
Sci Rep.
12
:
533
The Role of Triacylglycerol in the Protection of Cells Against Lipotoxicity Under Drought in Lolium multiflorum/Festuca arundinacea Introgression Forms.
2022.
Perlikowski, D., Lechowicz, K., Skirycz, Aleksandra, Michaelis, Ä., Pawłowicz, I., Kosmala, A.
Plant Cell Physiol..
pcac003
:
Neuronal KGB-1 JNK MAPK signaling regulates the dauer developmental decision in response to environmental stress in C. elegans
2022.
Dogra, D., Kulalert, W., Schroeder, Frank, Kim, D.H.
Genetics.
220
:
iyab186
The Physalis Improvement Project: blending research with community science: How community science can advance research.
2022.
Van Eck, Joyce
EMBO Rep..
23
:
e53918
Rapid Screening of Myzus persicae (Green Peach Aphid) RNAi Targets Using Tobacco Rattle Virus.
2022.
Feng, H., Jander, Georg
Methods Mol Biol..
2360
:
105–117
Inhibition of Rhopalosiphum maidis (Corn Leaf Aphid) Growth on Maize by Virus-Induced Gene Silencing with Sugarcane Mosaic Virus.
2022.
Chung, S.H., Jander, Georg
Methods Mol Biol..
2360
:
139–153
Molecular ecology of plant volatiles in interactions with insect herbivores.
2022.
Zhou, S., Jander, Georg
J Exp Bot..
73
:
449–462
Ground tissue circuitry regulates organ complexity in maize and Setaria
2021.
Ortiz-Ramírez, C., Guillotin, B., Xu, X., Rahni, R., Zhang, S., Yan, Z., Coqueiro Dias Araujo. P,, Demesa-Arevalo, E., Lee, L., Van Eck, Joyce, Gingeras, T.R.,, Jackson, D., Gallagher, K.L., Birnbaum, K.D.
Science.
374
:
1247–1252
Transcriptome Analysis of Melocactus glaucescens (Cactaceae) Reveals Metabolic Changes During in vitro Shoot Organogenesis Induction
2021.
Torres-Silva, G., Correia, L.N.F., Batista, D.S., Koehler, S.V., Resende, A.D. , Romanel, E., Cassol, D., Almeida, A.M.R., Strickler, S.R., Specht, C.D.
Frontiers in Plant Science.
12
:
Comparative analysis of chloroplast genome structure and molecular dating in Myrtales
2021.
Zhang, X.F., Landis, J.B., Wang, H.X., Zhu, Z.H., Wang, H.F.
BMC Plant Biology.
21
:
Plastome structure and phylogenetic relationships of Styracaceae (Ericales).
2021.
Cai, X., Landis, J.B., Wang, H.X., Wang, J.H., Zhu, Z.X., Wang, H.F.
BMC Ecology and Evolution.
21
:
Transcriptomes of Saussurea (Asteraceae) provide insights into high-altitude adaptation
2021.
Zhang, X., Sun, Y., Landis, J.B., Shen, J., Zhang, H., Feng, T., Kuang, T., Sun, W., Sun, J., Tiamiyu, B.B., Deng, T., Sun, H.
Plants.
10
:
Extinction risk in vascular plants and vertebrates is negatively correlated with family size
2021.
Fu, Q., Huang, X., Landis, J.B., Liu, P., Li, L., Lv, Z., Chen, J., Wang, H., Chen, J., Jiang, X., Jin, Y., Sun, H., Deng, T.
Global Ecology and Conservation.
30
:
Macroevolutionary pattern of Saussurea (Asteraceae) provides insights into the drivers of radiating diversification
2021.
Zhang, X., Landis, J.B., Sun, Y., Zhang, H., Feng, T., Lin, N., Tiamiyu, B., Huang, X., Deng, T., Wang, H., Sun, H.
Proceedings of the Royal Society B.
288
:
Nuclear and plastid phylogenomic analyses provide insights into the reticulate evolution, species delimitation and biogeography of the Sino-Japanese disjunctive Diabelia (Caprifoliaceae)
2021.
Ke, X.R., Morales-Briones, D.F., Wang, H.X., Sun, Q.H., Landis, J.B., Wen, J., Wang, H.F.
Journal of Systematics and Evolution.
:
Phylogenomic and comparative analyses of Rheum (Polygonaceae, Polygonoideae)
2021.
Zhang, H., Zhang, X., Landis, J.B., Sun, ., Deng, T., Sun, H., Wang, H.
Journal of Systematics and Evolution.
:
Phytohormones in fruit development and maturation
2021.
Fenn, M.A., Giovannoni, James J.
Plant J..
105
:
446–458
Combination of network and molecule structure accurately predicts competitive inhibitory interactions
2021.
Razaghi-Moghadam, Z., Sokolowska, E.M., Sowa, M.A., Skirycz, Aleksandra, Nikoloski, Z.
Comput Struct Biotechnol J..
19
:
2170–2178
Indole-3-glycerolphosphate synthase, a branchpoint for the biosynthesis of tryptophan, indole, and benzoxazinoids in maize
2021.
Richter, A., Powell, A.F., Mirzaei, M., Wang, L.J., Movahed, N., Miller, J.K., Piñeros, M.A., Jander, Georg
Plant J..
106
:
245–257
Comprehensive genotyping of a Brazilian cassava (Manihot esculenta Crantz) germplasm bank: insights into diversification and domestication.
2021.
Ogbonna, A.C., Braatz de Andrade, L.R., Mueller, Lukas A., de Oliveira, E.J., Bauchet, G.J.
Theor Appl Genet..
134
:
1343–1362
Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana
2021.
Calderan-Rodrigues, M.J. Luzarowski, M., Monte-Bello, C.C., Minen, R.I., Zühlke, B.M., Nikoloski, Z., Skirycz, Aleksandra, Caldana, C.
Front Plant Sci..
12
:
758933
Integrative Proteomic and Phosphoproteomic Analyses of Pattern- and Effector-Triggered Immunity in Tomato
2021.
Yu, J., Gonzalez, J.M., Dong, Z., Shan, Q., Tan, B., Koh, J., Zhang, T., Zhu, N., Dufresne, C., Martin, Gregory B., Chen, S.
Front Plant Sci..
12
:
768693
Can Cross-Country Genomic Predictions Be a Reasonable Strategy to Support Germplasm Exchange? – A Case Study With Hydrogen Cyanide in Cassava
2021.
Torres, L.G., de Oliveira, E.J., Ogbonna, A.C., Bauchet, G.J., Mueller, Lukas A., Azevedo, C.F., Silva, F.F.E., Simiqueli, G.F., de Resende, M.D.V.
Front Plant Sci..
12
:
742638
Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits
2021.
Cai, X., Sun, X., Xu, C., Sun, H., Wang, X., Ge, C., Zhang, Z., Wang, Q., Fei, Zhangjun, Jiao, C., Wang, Q.
Nat Commun..
12
:
7246
A population based expression atlas provides insights into disease resistance and other physiological traits in cassava (Manihot esculenta Crantz)
2021.
Ogbonna, A.C., Ramu, P., Esuma, W., Nandudu, L., Morales, N., Powell, A., Kawuki, R., Bauchet, G., Jannink, J.L., Mueller, Lukas A.
Sci Rep..
11
:
23520
Decolonizing botanical genomics
2021.
Li, Fay-Wei
Nat. Plants.
7
:
1542–1543
Interspecific Recombination Between Zucchini Tigre Mosaic Virus and Papaya Ringspot Virus Infecting Cucurbits in China
2021.
Peng, B., Liu, L., Wu, H., Kang, B., Fei, Zhangjun, Gu, Q.
Frontiers in Microbiology.
12
:
Bt Cry1Ac resistance in Trichoplusia ni is conferred by multi-gene mutations
2021.
Ma, X., Shao, E., Chen,W., Cotto-Rivera, R., Yang, W., Kain, W., Fei, Zhangjun, Wang, P.
Insect Biochemistry and Molecular Biology.
140
:
A systems genetics approach reveals PbrNSC as a regulator of lignin and cellulose biosynthesis in stone cells of pear fruit
2021.
Wang, R., Xue, Y., Fan, F., Yao, J., Qin, M., Lin, T., Lian, Q., Zhang, M., Li, X., Li, J., Sun, M., Song, B., Zhang, J., Zhao, K., Chen, X., Hu, H., Fei, Zhangjun, Xue, C., Wu, J.
Genome Biology.
22
:
Spelling Changes and Fluorescent Tagging With Prime Editing Vectors for Plants
2021.
Wang, L., Kaya, H. B., Zhang, N., Rai, R., Willmann, M. R., Carpenter, S., Read, A. C., Martin, F., Fei, Zhangjun, Leach, J. E., Martin, Gregory B., & Bogdanove, A. J.
Frontiers in Genome Editing.
3
:
Cellular and molecular characterizations of the irregular internode division zone formation of a slow growing bamboo variant
2021.
Gao, Z., Guo, L., Ramakrishnan, M., Xiang, Y., Jiao, C., Jiang, J., Vinod, K.K., Fei, Zhangjun, Que, F., Ding, Y., Yu, F., Chen, T., Wei, Q.
Tree Physiology.
:
Genome-wide association study reveals the genetic architecture of 27 agronomic traits in tomato
2021.
Ye, J., Wang, X., Wang, W., Yu, H., Ai, G., Li, C., Sun, P., Wang, X., Li, H., Ouyang, B., Zhang, J., Zhang, Y., Han, H., Giovannoni, James, Fei, Zhangjun, Ye, Z.
Plant Physiology.
186
:
2078–2092
Genetic Resources and Vulnerabilities of Major Cucurbit Crops
2021.
Grumet, R., McCreight, J.D., McGregor, C., Weng, Y., Mazourek, M., Reitsma, K., Labate, J., Davis, A., Fei, Zhangjun
Genes.
12
:
1222
Comparison of High-Resolution Fourier Transform Mass Spectrometry Platforms for Putative Metabolite Annotation
2021.
Huang, D., Bouza, M., Gaul, D.A., Leach, F.E. 3rd., Amster, I.J., Schroeder, Frank, Edison, A.S., Fernández, F.M.
Annals of Chemical Science Research.
93
:
12374–12382
Combinatorial Assembly of Modular Glucosides via Carboxylesterases Regulates C. elegans Starvation Survival
2021.
Wrobel, C.J.J., Yu. J., Rodrigues. P.R., Ludewig. A.H., Curtis, B.J., Cohen, S.M., Fox, B.W., O'Donnell, M.P., Sternberg, P.W., Schroeder, Frank
Journal of the American Chemical Society.
143
:
14676–14683
Plant genome engineering from lab to field-a Keystone Symposia report
2021.
Cable, J., Ronald, P.C., Voytas, D., Zhang, F., Levy, A.A., Takatsuka, A., Arimura, S., Jacobsen, S.E., Toki, S., Toda, E., Gao, C., Zhu, J., Boch, J., Van Eck, Joyce, Mahfouz, M., Andersson, M., Fridman, E., Weiss, T., Wang, K., Qi, Y., Jores, T., Adams, T., Bagchi, R.
Annals of the New York Academy of Sciences.
:
Genome- and transcriptome-wide off-target analyses of an improved cytosine base editor
2021.
Bentley Randall, L., Sretenovic, S., Wu, Y., Yin, D., Zhang, T., Van Eck, Joyce, Qi, Y.
Plant Physiology.
187
:
73–87
Metabolic networks of the Nicotiana genus in the spotlight: content, progress and outlook
2021.
Foerster, H., Battey, J.N.D., Sierro, N., Ivanov, N.V., Mueller, Lukas A.
Brief Bioinform..
22
:
bbaa136
Genomic impact of stress-induced transposable element mobility in Arabidopsis.
2021.
Roquis, D., Robertson, M., Yu, L., Thieme, M., Julkowska, Magdalena, Bucher, E.
Nucleic Acids Res..
49
:
10431–10447
Fifteen compelling open questions in plant cell biology.
2021.
Roeder, A.H.K., Otegui, M.S., Dixit, R., Anderson, C.T., Faulkner, C., Zhang, Y., Harrison, Maria J., Kirchhelle, C., Goshima, G., Coate, J.E., Doyle, J.J., Hamant, O., Sugimoto, K., Dolan, L., Meyer, H., Ehrhardt, D.W., Boudaoud, A., Messina, C.
Plant Cell..
34
:
72–102
The diversity and community structure of symbiotic cyanobacteria in hornworts inferred from long-read amplicon sequencing
2021.
Nelson, J.M., Hauser, D.A., Li, Fay-Wei
American Journal of Botany.
108
:
1731–1744
Monodopsis and Vischeria Genomes Shed New Light on the Biology of Eustigmatophyte Algae
2021.
Yang, H.-P., Wenzel, M., Hauser, D.A., Nelson, J.M., Xu, X., Eliáš, M., Li, Fay-Wei
Genome Biology and Evolution.
13
:
evab233
The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago.
2021.
Raharimalala, N., Rombauts, S., McCarthy, A., Garavito, A., Orozco-Arias, S., Bellanger, L., Morales-Correa, A.Y., Froger, S., Michaux, S., Berry, V., Metairon, S., Fournier, C., Lepelley, M., Mueller, Lukas A., Couturon, E., Hamon, P., Rakotomalala, J.J., Descombes, P., Guyot, R., Crouzillat, D.
Sci Rep..
11
:
8119
Vision, challenges and opportunities for a Plant Cell Atlas.
2021.
Ahmed, J., Alaba, O., Ameen, G., Arora, V., Arteaga-Vazquez, M.A., Arun, A., Bailey-Serres, J., Bartley, L.E., Bassel, G.W., Bergmann, D.C., Bertolini, E., Bhati, K.K., Blanco-Touriñán, N., Briggs, S.P., Brumos, J., Buer, B., Burlaocot, A., Cervantes-Pérez, S.A., Chen, S., Contreras-Moreira, B., Corpas, F.J., Cruz-Ramirez, A., Cuevas-Velazquez, C.L., Cuperus, J.T., David, L.I., de Folter, S., Denolf, P.H., Ding, P., Dwyer, W.P., Evans, M.M., George, N., Handakumbura, P.P., Harrison, Maria J., Haswell, E.S., Herath, V., Jiao, Y., Jinkerson, R.E., John, U., Joshi, S., Joshi, A., Joubert, L.-M., Katam, R., Kaur, H., Kazachkova, Y., Kenchanmane Raju, S.K., Khan, M.A., Khangura, R., Kumar, A., Kumar, A., Kumar, P., Kumar, P., Lavania, D., Lew, T.T.S., Lewsey, M.G., Lin, C.Y., Liu, D., Liu, L., Liu, T., Lokdarshi, A., Luong, A.M., Macaulay, I.C., Mahmud, S., Mähönen, A.P., Malukani, K.K., Marand, A.P., Martin, C.A., McWhite, C.D., Mehta, D., Martín, M.M., Mortimer, J.C., Nikolov, L.A., Nobori, T., Nolan, T.M., Ogden, A.J., Otegui, M.S., Ott, M.-C., Palma, J.M., Paul, P., Rehman, A.U., Romera-Branchat, M., Romero, L.C., Roth, R., Sah, S.K., Shahan, R., Solanki, S., Song, B.-H., Sozzani, R., Stacey, G., Stepanova, A.N., Taylor, N.L., Tello-Ruiz, M.K., Tran, T.M., Tripathi, R.K., Vadde, B.V.L.V., Varga, T., Vidovic, M., Walley, J.W., Wang, Z., Weizbauer, R.A., Whelan, J., Wijeratne, A.J., Xiang, T., Xu, S., Yadegari, R., Yu, H., Yuan, H.Y., Zanini, F., Zhao, F., Zhu, J., ZhuangJha, X., Jha, S.G., Borowsky, A.T., Cole ,B.J., Fahlgren, N., Farmer, A., Huang, S.C., Karia, P., Libault, M., Provart, N.J., Rice, S.L., Saura-Sanchez, M., Agarwal, P., Ahkami, A.H., Anderton, C.R., Briggs, S.P., Brophy, J.A., Denolf, P., Di Costanzo, L.F., Exposito-Alonso, M., Giacomello, S., Gomez-Cano, F., Kaufmann, K., Ko, D.K., Kumar, S., Malkovskiy, A.V., Nakayama, N., Obata, T., Otegui, M.S., Palfalvi, G., Quezada-Rodríguez, E.H., Singh, R., Uhrig, R.G., Waese, J., Van Wijk, K., Wright, R.C., Ehrhardt, D.W., Birnbaum, K.D., Rhee, S.Y.
Elife.
7
:
e66877
Underwater CAM photosynthesis elucidated by Isoetes genome.
2021.
Wickell, D., Kuo, L.Y., Yang, H.P., Dhabalia, A.A., Irisarri, I., Dadras, A., de Vries, S., de Vries, J., Huang, Y.M., Li, Z., Barker, M.S., Hartwick, N.T., Michael, T.P., Li, Fay-Wei
Nat Commun..
12
:
6348
Acropetal and basipetal cardenolide transport in Erysimum cheiranthoides (wormseed wallflower).
2021.
Alani, M.L., Younkin, G.C., Mirzaei, M., Kumar, P., Jander, Georg
Phytochemistry.
192
:
112965
PROMISed: A novel web-based tool to facilitate analysis and visualization of the molecular interaction networks from co-fractionation mass spectrometry (CF-MS) experiments.
2021.
Schlossarek, D., Luzarowski, M., Sokołowska, E., Górka, M., Willmitzer, L., Skirycz, Aleksandra
Comput Struct Biotechnol J..
:
Acylsugars protect Nicotiana benthamiana against insect herbivory and desiccation.
2021.
Feng, H., Acosta-Gamboa, L., Kruse, L.H., Tracy, J.D., Chung, S.H., Nava Fereira, A.R., Shakir, S., Xu, H., Sunter, G., Gore, M.A., Casteel, C.L., Moghe, G.D., Jander, Georg
Plant Mol Biol..
:
Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins.
2021.
Ginsawaeng, O., Gorka, M., Erban, A., Heise, C., Brueckner, F., Hoefgen, R., Kopka, J., Skirycz, Aleksandra, Hincha, D.K., Zuther, E.
Int J Mol Sci..
22
:
8172
A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening.
2021.
Shi, Y., Vrebalov, J., Zheng, H., Xu, Y., Yin, X., Liu, W., Liu, Z., Sorensen, I., Su, G., Ma, Q., Evanich, D., Rose, J.K.C., Fei, Zhangjun, Van Eck, Joyce, Thannhauser, T., Chen, K., Giovannoni, James J.
Proc Natl Acad Sci.
118
:
Overcoming the Challenges to Enhancing Experimental Plant Biology With Computational Modeling.
2021.
Dale, R., Oswald, S., Jalihal, A., LaPorte, M.F., Fletcher, D.M., Hubbard, A., Shiu, S.H., Nelson, Andrew D.L., Bucksch, A.
Front Plant Sci..
12
:
A community-led initiative for training in reproducible research
2021.
Auer, S., Haeltermann, NA., Weissberger, TL., Erlich, JC., Susilaradeya, D., Julkowska, Magdalena, Gazda, MA., Schwessinger, B., Jadavji, NM.
eLife.
10
:
e64719
Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics
2021.
Yue, J., Liu, J., Tang, W., Wu, YQ., Tang, X., Li, W., Yang, Y., Wang, L., Huang, S., Fang, C., Zhao, K., Fei, Zhangjun, Liu, Y., Zheng, Y.
Horticulture Research.
7(1)
:
Natural Genetic Diversity in Tomato Flavor Genes
2021.
Pereira, L., Sapkota, M., Alonge, M., Zheng, Y., Zhang, Y., Razifard, H., Taitano, NK., Schatz, MC., Fernie, AR., Wang, Y., Fei, Zhangjun, Caicedo, AL., Tieman, DM., van der Knaap, E.
Frontiers in Plant Science.
:
A chromosome-level genome of a Kordofan melon illuminates the origin of domesticated watermelons
2021.
Renner, SS., Wu, S., Pérez-Escobar, OA., Silber,MV., Fei, Zhangjun, Chomicki, G.
Proceedings of the National Academy of Sciences of the United States of America.
118
:
Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices
2021.
Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D'Auria, J., Ewald, J., C Ewald, J., Fraser, PD., Giavalisco, P., Hall, RD., Heinemann, M., Link, H., Luo, J., Neumann. S., Nielsen, J., Perez de Souza, L., Saito, K., Sauer, U., Schroeder, Frank, Schuster, S., Siuzdak, G., Skirycz, Aleksandra, Sumner, LW., Snyder, MP., Tang, H., Tohge, T., Wang, Y., Wen, W., Wu, S., Xu, G., Zamboni, N., Fernie, AR.
Nature Methods.
18
:
747–756
Inversion of pheromone preference optimizes foraging in C. elegans
2021.
Dal Bello, M., Pérez-Escudero, A., Schroeder, Frank, Gore, J.
eLife.
10
:
Correcting for Naturally Occurring Mass Isotopologue Abundances in Stable-Isotope Tracing Experiments with PolyMID
2021.
Jeong, H., Yu, Y., Johansson, HJ., Schroeder, Frank, Lehtiö, J., Vacanti, NM.
Metabolites.
:
Nematode Signaling Molecules Are Extensively Metabolized by Animals, Plants, and Microorganisms
2021.
Yu, Y., Zhang, YK., Manohar, M., Artyukhin, AB., Kumari, A., Tenjo-Castano, FJ., Nguyen, H., Routray, P., Choe, A., Klessig, Dan, Schroeder, Frank
ACS Chem. Biology.
16
:
1050–1058
Transcriptional Response to a Dauer-Inducing Ascaroside Cocktail in Late L1 in C. elegans
2021.
Cohen, SM., Sun, JJ., Schroeder, Frank, Sternberg, PW.
MicroPubl Biology.
:
An Agrobacterium-mediated stable transformation technique for the hornwort model Anthoceros agrestis
2021.
Frangedakis, E., Waller, M., Nishiyama, T., Tsukaya, H., Xu, X., Yue, Y., Tjahjadi, M., Gunadi, A., Van Eck, Joyce, Li, Fay-Wei, Szövényi, P., Sakakibara, K.
New Phytologist.
232
:
1488–1505
A novel thylakoid-less isolate fills a billion-year gap in the evolution of Cyanobacteria
2021.
Rahmatpour, N., Hauser, D.A., Nelson, J.M., Chen, P.Y., Villarreal, J.C., Ho, M.Y., Li, Fay-Wei
Current Biology.
31
:
2857–2867
Annotation of segmentation pathway genes in the Asian citrus psyllid, Diaphorina citri
2021.
Miller, S., Shippy, T.D., Hosmani, P.S., Flores-Gonzalez, M., Mueller, Lukas A., Hunter, W.B., Brown, S.J., D’Elia, T., Saha, S.
Gigabyte.
1
:
Apple Ripening Is Controlled by a NAC Transcription Factor.
2021.
Migicovsky, Z., Yeats, T.H., Watts, S., Song, J., Forney, C.F., Burgher-MacLellan, K., Somers, D.J., Gong, Y., Zhang, Z., Vrebalov, J., van Velzen, R., Giovannoni, James G., Rose, J.K.C., Myles, S.
Front Genet..
12
:
Global patterns in genomic diversity underpinning the evolution of insecticide resistance in the aphid crop pest Myzus persicae.
2021.
Singh, K.S., Cordeiro, E.M.G., Troczka, B.J., Pym, A., Mackisack, J., Mathers, T.C., Duarte, A., Legeai, F., Robin, S., Bielza, P., Burrack, H.J., Charaabi, K., Denholm, I., Figueroa, C.C., Ffrench-Constant, R.H., Jander, Georg, Margaritopoulos, J.T., Mazzoni, E., Nauen, R., Ramírez, C.C., Ren, G., Stepanyan, I., Umina, P.A., Voronova, N.V., Vontas, J., Williamson, M.S., Wilson, A.C.C., Xi-Wu, G., Youn, Y.N., Zimmer, C.T., Simon, J.C., Hayward, A., Bass, C.
Commun Biol..
4
:
847
Evolution of plant telomerase RNAs: farther to the past, deeper to the roots
2021.
Fajkus, P., Kilar, A., Nelson, Andrew D.L., Holá, M., Peška, V., Goffová, I., Fojtová, M., Zachová, D., Fulnečková, J., Fajkus, J.
Nucleic Acids Research.
49
:
7680–694
Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism
2021.
Camilo Moreno, J., Rojas, B.E., Vicente, R., Gorka, M., Matz, T., Chodasiewicz, M., Peralta-Ariza, J.S., Zhang, Y., Alseekh, S., Childs, D., Luzarowski, M., Nikoloski, Z., Zarivach, R., Walther, D., Hartman, M.D., Figueroa, C.M., Iglesias, A.A., Fernie AR, Skirycz, Aleksandra
EMBO J..
40
:
e106800
Affinity Purification-Mass Spectrometry Identifies a Novel Interaction between a Polerovirus and a Conserved Innate Immunity Aphid Protein that Regulates Transmission Efficiency
2021.
DeBlasio, S.L., Wilson, J.R., Tamborindeguy, C., Johnson, R.S., Pinheiro, P.V., MacCoss, M.J., Gray, S.M., Heck, Michelle L.
J Proteome Res..
20
:
3365–3387
Proteomic Polyphenism in Color Morphotypes of Diaphorina citri, Insect Vector of Citrus Greening Disease
2021.
Hosseinzadeh, S., Higgins, S.A., Ramsey, J., Howe, K., Griggs, M., Castrillo, L., Heck, Michelle L.
J Proteome Res..
20
:
2851–2866
Chloroplast quality control pathways are dependent on plastid DNA synthesis and nucleotides provided by cytidine triphosphate synthase two
2021.
Alamdari, K., Fisher, K.E., Tano, D.W., Rai, S., Palos, K., Nelson, Andrew D.L., Woodson, J.D.
New Phytologist.
231
:
1431–1448
Unraveling a Genetic Roadmap for Improved Taste in the Domesticated Apple
2021.
Liao, L., Zhang, W., Zhang, B., Fang, T., Wang, X.F., Cai, Y., Ogutu, C., Gao, L., Chen, G., Nie, X., Xu, J., Zhang, Q., Ren, Y., Yu, J., Wang, C., Deng, C.H., Ma, B., Zheng, B., You, C.X., Hu, D.G., Espley, R., Lin-Wang, K., Yao, J.L., Allan, A.C., Khan, A., Korban, S.S., Fei, Zhangjun, Ming, R., Hao, Y.J., Li, L., Han, Y.
Mol Plant.
:
A chromosome-level genome of a Kordofan melon illuminates the origin of domesticated watermelons
2021.
Renner, S.S., Wu, S., Perez-Escobar, O.A., Silber, M.V., Fei, Zhangjun, Chomicki, G.
Proc Natl Acad Sci U S A.
:
Transcriptional Response to a Dauer-Inducing Ascaroside Cocktail in Late L1 in C. elegans
2021.
Cohen, S.M., Sun, J.J., Schroeder, Frank
MicroPubl Biol..
:
Nematode Signaling Molecules Are Extensively Metabolized by Animals, Plants, and Microorganisms
2021.
Yu, Y., Zhang, Y.K., Manohar, M., Artyukhin, A.B., Kumari, A., Tenjo-Castano, F.J., Nguyen, H., Routray, P., Choe, A., Klessig, Daniel F., Schroeder, Frank
ACS Chem Biol..
:
PIF4 negatively modulates cold tolerance in tomato anthers via temperature-dependent regulation of tapetal cell death
2021.
Pan, C., Yang, D., Zhao, X., Liu, Y., Li, M., Ye, L., Ali, M., Yu, F., Lamin-Samu, A.T., Fei, Zhangjun, Lu, G.
Plant Cell.
:
Genetic mapping of the early responses to salt stress in Arabidopsis thaliana
2021.
Awlia, M., Alshareef, N., Saber, N., Korte, A., Oakey, H., Panzarova, K., Trtilek, M., Negrao, S., Tester, M., Julkowska, Magdalena
Plant J..
107
:
544–563
Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification
2021.
Guo, N., Wang, S., Gao, L., Liu, Y., Wang, X., Lai, E., Duan, M., Wang, G., Li, J., Yang, M., Zong, M., Han, S., Pei, Y., Borm, T., Sun, H., Miao, L., Liu, D., Yu, F., Zhang, W., Ji, H., Zhu, C., Xu, Y., Bonnema, G., Li, J., Fei, Zhangjun, Liu, F.
BMC Biol..
:
Rubisco production in maize mesophyll cells through ectopic expression of subunits and chaperones
2021.
Hotto, A.M., Salesse-Smith, C., Lin, Y., Busch, F.A., Simpson, I., Stern, David
J Exp Bot..
:
Comparative transcriptome profiling of Chinese wild grapes provides insights into powdery mildew resistance
2021.
Jiao, C., Sun, X., Yan, X., Xu, X., Yan, Q., Gao, M., Fei, Zhangjun, Wang, X.
:
Engineering insect resistance using plant specialized metabolites.
2021.
Zhou, S., Jander, Georg
Curr Opin Biotechnol..
70
:
115–121
The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago
2021.
Raharimalala, N., Rombauts, S., McCarthy, A., Garavito, A., Orozco-Arias, S., Bellanger, L., Morales-Correa, A.Y., Froger, S., Michaux, S., Berry, V., Metairon, S., Fournier, C., Lepelley, M., Mueller, Lukas, A., Couturon, E., Hamon, P., Rakotomalala, J.J., Descombes, P., Guyot, R., Crouzillat, D.
Sci Rep..
:
Charting the genomic landscape of seed-free plants
2021.
Szövényi, P., Gunadi, A., Li, Fay-Wei
Nat Plants..
7
:
554–565
Prey sensing and response in a nematode-trapping fungus is governed by the MAPK pheromone response pathway
2021.
Chen, S.A., Lin, H.C., Schroeder, Frank, Hsueh, Y.P.
Genetics.
:
Phenolic sucrose esters: evolution, regulation, biosynthesis, and biological functions
2021.
Deng, R., Li, W., Berhow, M.A., Jander, Georg, Zhou, S.
Plant Molecular Biology.
:
Functional characterization of proton antiport regulation in the thylakoid membrane
2021.
Uflewski, M., Mielke, S., Galvis, V.C., von Bismarck, T., Chen, X., Tietz, E., Ruß, J., Luzarowski, M., Sokolowska, E., Skirycz, Aleksandra, Eirich, J., Finkemeier, I., Schöttler, M.A., Armbruster, U.
Plant Physiol..
:
Genetic mapping identifies a rice naringenin O-glucosyltransferase that influences insect resistance
2021.
Yang, Z., Li, N., Kitano, T., Li, P., Spindel, J.E., Wang, L., Bai, G., Xiao, Y., McCouch, S.R., Ishihara, A., Zhang, J., Yang, X., Chen, Z., Wei, J., Ge, H., Jander, Georg, Yan, J.
Plant J..
106
:
1401–1413
A sugarcane mosaic virus vector for rapid in planta screening of proteins that inhibit the growth of insect herbivores
2021.
Chung, S.H., Bigham, M., Lappe, R.R., Chan, B., Nagalakshmi, U., Whitham, S.A., Dinesh-Kumar, S.P., Jander, Georg
Plant Biotechnol J..
19
:
1713–1724
Ethylene-regulated asymmetric growth of the petal base promotes flower opening in rose (Rosa hybrida)
2021.
Cheng, C., Yu, Q., Wang, Y., Wang, H., Dong, Y., Ji, Y., Zhou, X., Li, Y., Jiang, C.Z., Gan, S.S., Zhao, L., Fei, Zhangjun, Gao, J., Ma, N.
Plant Cell..
:
Genomic analyses provide insights into peach local adaptation and responses to climate change
2021.
Li, Y., Cao, K, Li, N., Zhu, G., Fang, Q., Chen, C., Wang, X., Guo, J., Wang, Q., Wang J., Guan, L., Wang, J., Liu, K., Guo, W., Arus, P., Huang, S., Fei, Zhangjun, Wang, L.
Genome Res..
:
Syntheses of Amorfrutins and Derivatives via Tandem Diels-Alder and Anionic Cascade Approaches
2021.
Curtis, B.J., Micikas, R.J., Burkhardt, R.N., Smith, R.A., Pan, J.Y., Jander, K., Schroeder, Frank
J Org Chem..
:
Engineering pest tolerance through plant-mediated RNA interference.
2021.
Chung, S.H., Feng, H., Jander, Georg
Curr Opin Plant Biol..
60
:
Conserved and reproducible bacterial communities associate with extraradical hyphae of arbuscular mycorrhizal fungi.
2021.
Emmett, B.D., Lévesque-Tremblay, V., Harrison, Maria J.
ISME J..
15
:
2276–2288
The ‘Tommy Atkins’ mango genome reveals candidate genes for fruit quality
2021.
Mango Genome Consortium, Bally, I.S.E., Bombarely, A., Chambers, A.H., Cohen, Y., Dillon, N.L., Innes, D.J., Islas-Osuna, M.A., Kuhn, D.N., Mueller, Lukas A., Ophir, R., Rambani, A., Sherman, A., Yan, H.
BMC Plant Biol..
:
A Multi-OMICs Approach Sheds Light on the Higher Yield Phenotype and Enhanced Abiotic Stress Tolerance in Tobacco Lines Expressing the Carrot lycopene β-cyclase1 Gene
2021.
Moreno, J.C., Martinez-Jaime, S., Kosmacz, M., Sokolowska, E.M., Schulz, P., Fischer, A., Luzarowska, U., Havaux, M., Skirycz, Aleksandra
Front Plant Sci.
12
:
The NAC transcription factor FaRIF controls fruit ripening in strawberry
2021.
Martín-Pizarro, C., Vallarino, J.G., Osorio, S., Meco, V., Urrutia, M., Pillet, J., Casañal, A., Merchante, C., Amaya, I., Willmitzer, L., Fernie, A.R., Giovannoni, James J., Botella, M.A., Valpuesta, V., Posé, D.
Plant Cell.
:
EDC3 phosphorylation regulates growth and invasion through controlling P-body formation and dynamics
2021.
Bearss, J.J., Padi, S.K., Singh, N., Cardo-Vila, M., Song, J.H., Mouneimne, G., Fernandes, N., Li, Y., Harter, M.R., Gard, J.M., Cress, A.E., Peti, W., Nelson, Andrew D.L., Buchan, J.R., Kraft, A.S., Okumura, K.
EMBO Rep..
:
Genome-wide association studies provide insights into the genetic determination of fruit traits of pear
2021.
Zhang, M.Y., Cheng, X., Hu, H., Li, J., Xue, Y., Wang, R., Fan, J., Zou, C., Tao, S., Qin, M., Bai, B., Li, X., Gu, C., Wu, C., Yang, G., Chen, X., Liu, Y., Sun, M., Fei, Zhangjun, Zhang, S., Wu, J.
:
Current status and impending progress for cassava structural genomics
2021.
Lyons, J.B., Bredeson, J.V., Mansfeld, B.N., Bauchet, G.J., Berry, J., Boyher, A., Mueller, Lukas A., Rokhsar, D.S., Bart, R.S.
:
Dual-purpose isocyanides produced by Aspergillus fumigatus contribute to cellular copper sufficiency and exhibit antimicrobial activity
2021.
Raffa, N., Won, T.H., Sukowaty, A., Candor, K., Cui, C., Halder, S., Dai, M., Landero-Figueroa, J.A., Schroeder, Frank, Keller, N.P.
Proc Natl Acad Sci U S A.
:
The role of PQL genes in response to salinity tolerance in Arabidopsis and barley
2021.
Alqahtani, M., Lightfoot, D., Lemtiri‐Chlieh, F., Bukhari, E., Pardo, M., Julkowska, Magdalena, Tester, M.
Plant Direct.
5
:
Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity
2021.
Luzarowski, M., Vicente, R., Kiselev, A., Wagner, M., Schlossarek, D., Erban, A., de Souza, L.P., Childs, D., Wojciechowska, I., Luzarowska, U., Górka, M., Sokołowska, E.M., Kosmacz, M., Moreno, J.C., Brzezińska, A., Vegesna, B., Kopka, J., Fernie, A.R., Willmitzer, L., Ewald, J.C., Skirycz, Aleksandra
Communications Biology.
4
:
Interaction of eukaryotic proliferating cell nuclear antigen (PCNA) with the replication-associated protein (Rep) of cotton leaf curl Multan virus and pedilanthus leaf curl virus.
2021.
Shakir, S., Jander, Georg, Nahid, N., Mubin, M., Younus, A., Nawaz-Ul-Rehman, M.S.
3 Biotech.
11
:
14
Transcriptome analysis provides insights into the responses of sweet potato to sweet potato virus disease (SPVD)
2021.
Bednarek, R., David, M., Fuentes, S., Kreuze, J., Fei, Zhangjun
:
Large-scale GWAS using historical data identifies a conserved genetic architecture of cyanogenic glucosides content in cassava (Manihot esculenta Crantz.) root
2021.
Ogbonna, A.C., Braatz de Andrade, L.R., Rabbi, I.Y., Mueller, Lukas A., de Oliverira, E.J., Bauchet, G.J.
Plant J..
105
:
754–770
The Hornworts: Morphology, evolution and development
2021.
Frangedakis, E., Shimamura, M., Villarreal, J.C., Li, Fay-Wei, Tomaselli, M., Waller, M., Sakakibara, K., Renzaglia, K.S., Szövényi, P.
New Phytol..
229
:
735–754
Natural variation in the expression and catalytic activity of a naringenin 7-O-methyltransferase influences antifungal defenses in diverse rice cultivars
2020.
Murata, K., Kitano, T., Yoshimoto, R., Takata, R., Ube, N., Ueno, K., Ueno, M., Yabuta, Y., Teraishi, M., Holland, C.K., Jander, Georg, Okumoto, Y., Mori, N., Ishihara, A.
Plant J..
101
:
1103–1117
Less Is More: a Mutation in the Chemical Defense Pathway of Erysimum cheiranthoides (Brassicaceae) Reduces Total Cardenolide Abundance but Increases Resistance to Insect Herbivores
2020.
Mirzaei, M., Züst, T., Younkin, G.C., Hastings, A.P., Alani, M.L., Agrawal, A.A., Jander, Georg
J Chem Ecol..
46
:
1131–1143
VIEWPOINT: Five recommendations for an inclusive and collaborative One CGIAR
2020.
Coffman, RC., Acevedom M., Evanega, Sarah, Porciello, J., Tufan, HA., McCandless, L.
Food Policy.
91
:
Bacterial Vector-Borne Plant Diseases: Unanswered Questions and Future Directions
2020.
Huang, W., Reyes-Caldas, P., Mann, M., Seifbarghi, S., Kahn, A., Almeida, R.P.P., Béven, L., Heck, Michelle L., Hogenhout, S.A., Coaker, G.
Mol Plant..
13
:
1379–1393
Endomembrane architecture and dynamics during secretion of the extracellular matrix of the unicellular charophyte, Penium margaritaceum
2020.
Domozych, D.S., Sun, L., Palacio-Lopez, K., Reed, R., Jeon, S., Li, M., Jiao, C., Sorensen, I., Fei, Zhangjun, Rose, J.K.C.
J Exp Bot..
:
A key ‘foxy’ aroma gene is regulated by homology-induced promoter indels in the iconic juice grape ‘Concord’
2020.
Yang, Y., Cuenca, J., Wang, N., Liang, Z., Sun, H., Gutierrez, B., Xi, X., Arro, J., Wang, Y., Fan, P., Londo, J., Cousins, P., Li, S., Fei, Z., Zhong, G.Y.
:
Small But Powerful: MicroRNA-Derived Peptides Promote Grape Adventitious Root Formation
2020.
Julkowska, Magdalena
:
Extreme Engineering: How Antarctic Algae Adapt to Hypersalinity
2020.
Julkowska, Magdalena
Plant Physiol..
:
Auxin Regulates Sucrose Transport to Repress Petal Abscission in Rose (Rosa hybrida)
2020.
Liang, Y., Jiang, C., Liu, Y., Gao, Y., Lu, J., Aiwaili, P., Fei, Zhangjun, Jiang, C.Z., Hong, B., Ma, C., Gao, J.
Plant Cell.
:
Comparison of in Vitro and in Planta Toxicity of Vip3A for Lepidopteran Herbivores
2020.
Khan, M.H., Jander, Georg, Mukhtar, Z., Arshad, M., Sarwar, M., Asad, S.
J Econ Entomol..
113
:
2959–2971
Coordination of NMCP1- and NMCP2-class proteins within the plant nucleoskeleton
2020.
Blunt, E., Shandler, J., Hughes, E., Sussman, H., Christopherson, R., Richards, Eric Jean
Molecular Biology of the Cell.
31
:
2948–2958
Tomato fruit as a model for tissue-specific gene silencing in crop plants
2020.
Feder, A., Jensen, S., Wang, A., Courtney, L., Middleton, L., Van Eck, Joyce, Liu, Y., Giovannoni, James J.
Horticulture Research.
7
:
142
Arabidopsis ADC1 functions as an Nδ -acetylornithine decarboxylase.
2020.
Lou, Y.R., Ahmed, S., Yan, J., Adio, A.M., Powell, H.M., Morris, P.F., Jander, Georg
J Integr Plant Biol..
62
:
601–613
PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
2020.
Fernandez-Pozo, N., Haas, F.B., Meyberg, R., Ullrich, K.K., Hiss, M., Perroud, P.F., Hanke, S., Kratz, V., Powell, A.F., Vesty, E.F., Daum, C.G., Zane, M., Lipzen, A., Sreedasyam, A., Grimwood, J., Coates, J.C., Barry, K., Schmutz, J., Mueller, Lukas A., Rensing, S.A.
:
Diverse Traits Contribute to Salinity Tolerance of Wild Tomato Seedlings from the Galapagos Islands
2020.
Pailles, Y., Awlia, M., Julkowska, Magdalena, Passone, L., Zemmouri, K., Negrao, S., Schmockel, S.M., Tester, M.
:
Constitutive Overexpression of RAM1 Leads to an Increase in Arbuscule Density in Brachypodium distachyon
2020.
Müller, L.M., Mueller, L.M., Campos-Soriano, L., Levesque‐Tremblay, V., Bravo, A., Daniels, D.A., Pathak, S., Park, H., Harrison, Maria J.
Plant Physiology.
184
:
1263–1272
A step-by-step protocol for meiotic chromosome counts in flowering plants: A powerful and economical technique revisited.
2020.
Windham, M.D., Pryer, K.M., Poindexter, D.B., Li, Fay-Wei, Rothfels, C.J., Beck, J.B.
Appl Plant Sci..
8
:
The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants
2020.
Jiao, C., Sorensen, I., Sun, X., Sun, H., Behar, H., Alseekh, S., Philippe, G., Lopez, K.P., Sun, L., Reed, R., Jeon, S., Kiyonami, R., Zhang, S., Fernie, A.R., Brumer, H., Domozych, D.S., Fei, Zhangjun, Rose, J.K.C.
Cell.
:
The genome and transcriptome analysis of snake gourd provide insights into its evolution and fruit development and ripening
2020.
Ma, L., Wang, Q., Mu, J., Fu, Z., Wen, C., Zhao, X., Gao, L., Li, J., Shi, K., Wang, Y., Zhang, X., Zhang, X., Fei, Zhangjun, Frierson, D., Zuo, J.
Hortic Res..
:
Adjustment of Photosynthetic and Antioxidant Activities to Water Deficit Is Crucial in the Drought Tolerance of Lolium multiflorum/Festuca arundinacea Introgression Forms
2020.
Lechowicz, K., Pawlowicz, I., Perlikowski, D., Arasimowicz-Jelonek, M., Blicharz, S., Skirycz, Aleksandra, Augustyniak, A., Malinowski, R., Rapacz, M., Kosmala, A.
Int J Mol Sci.
:
Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90 and ROF1
2020.
Tirumalaikumar, V.P., Gorka, M., Schulz, K., Maxclaux-Daubresse, C., Sampathkumar, A., Skirycz, Aleksandra, Vierstra, R.D., Balazadeh, S.
Authphagy.
:
Identification and Characterization of the Heat-Induced Plastidial Stress Granules Reveal New Insight Into Arabidopsis Stress Response
2020.
Chodasiewicz, M., Sokolowska, E.M., Nelson-Dittrich, Anna C., Masiuk, A., Beltran, J.C.M., Nelson, Andrew D.L., Skirycz, Aleksandra
Front Plant Sci..
11
:
Autophagy is responsible for the accumulation of proteogenic dipeptides in response to heat stress in Arabidopsis thaliana
2020.
Thirumalaikumar, V.P., Wagner, M., Balazadeh, S., Skirycz, Aleksandra
FEBS J..
:
Separation and Paired Proteome Profiling of Plant Chloroplast and Cytoplasmic Ribosomes
2020.
Firmino, A.A.P., Gorka, M., Graf, A., Skirycz, A., Martinez-Seidel, F., Zander, K., Kopka, J., Beine-Golovchuk, O.
Plants (Basel).
:
Efficient root metabolism improves drought resistance of Festuca arundinacea
2020.
Perlikowski, D., Augustyniak, A., Skirycz, A., Pawlowicz, I., Masajada, K., Michaelis, I.N., Kosmala, A.
Plant Cell Physiol.
:
An Abundance and Interaction Encyclopedia of Plant Protein Function
2020.
Zhang, Y., Skirycz, Aleksandra, Fernie, A.R.
Trends Plant Sci.
:
The Isolation of Stress Granules From Plant Material
2020.
Kosmacz, M., Skirycz, Aleksandra
Curr Protoc Plant Biol.
:
Towards a functional understanding of the plant metabolome
2020.
Kosmacz, M., Sokolowska, E.M., Bouzaa, S., Skirycz, Aleksandra
:
Toward spatially resolved metabolomics
2020.
Fox, B.W., Schroeder, Frank
Nat Chem Biol..
:
Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding
2020.
Wang, X., Gao, L., Jiao, C., Stravoravdis, S., Hosmani, P.S., Saha, S., Zhang, J., Mainiero, S., Strickler, Susan, R., Catala, Carmen, Martin, Gregory, B., Mueller, Lukas A., Vrebalov, J., Giovannoni, James J., Wu, S., Fei, Zhangjun
Nat Commun.
11
:
5817
GWAS Based on RNA-Seq SNPs and High-Throughput Phenotyping Combined with Climatic Data Highlights the Reservoir of Valuable Genetic Diversity in Regional Tomato Landraces
2020.
Rodriguez, M., Scintu, A., Posadinu, C.M., Xu, Y., Nguyen, C.V., Sun, H., Bitocchi, E., Bellucci, E., Papa, R., Fei, Zhangjun, Giovannoni, James, J., Rau, D., Attene, G.
Genes (Basel).
11
:
Draft Genome Sequence Resource of the Citrus Stem-End Rot Fungal Pathogen Lasiodiplodia theobromae CITRA15
2020.
Zheng, Q., Ozbudak, E., Liu, G., Hosmani, P.S., Saha, S., Flores-Gonzales, M., Mueller, Lukas A., Rodrigues-Stuart, K., Dewdney, M.M., Lin, Y., Zhang, J., Carrillo-Tarazona, Y., Liu, B., Oliva, R., Ritenour, M., Cana, L.M.
Phytopathology.
:
The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems
2020.
Arnaud, E., Laporte, M.A., Kim, S., Aubert, C., Leonelli, S., Miro, B., Cooper, L., Jaiswal, P., Kruseman, G., Shrestha, R., Buttigieg, P.L., Mungall, C.J., Bauchet, G., Mueller, Lukas A., Silverstein, K., Lafargue, A., Antezana, E., Devare, M., King, B.
Patterns.
:
Manipulation of ZDS in tomato exposes carotenoid- and ABA-specific effects on fruit development and ripening
2020.
McQuinn, R.P., Gapper, N.E., Gray, A.G., Zhong, S., Takayuki, T., Fei, Zhangjun, Fernie, A.R., Giovannoni, James J.
:
High density genotype storage for plant breeding in the Chado schema of Breedbase
2020.
Morales, N., Bauchet, G.J., Tantikanjana, T, Powell, A.F., Ellerbrock, B.J., Tecle, I.Y., Mueller, Lukas A.
:
Increased Rubisco content in maize mitigates chilling stress and speeds recovery
2020.
Salesse-Smith, C.E., Sharwood, R.E., Busch, F.A., Stern, David
:
Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations
2020.
Zhou, C., Olukolu, B., Gemenet, D.C., Wu, S., Gruneberg, W., Cao, M.D., Fei, Zhangjun, Zeng, Z.B., George, A.W., Khan, A., Yencho, G.C., Coin, L.J.M.
:
Insights into population structure of East African sweetpotato cultivars from hybrid assembly of chloroplast genomes
2020.
Zhou, C., Duarte, T., Silvestre, R., Rossel, G., Mwanga, R.O.M., Khan, A., George, A.W., Fei, Zhangjun, Yencho, G.C., Ellis, D., Coin, L.J.M.
:
QTL associated with gummy stem blight resistance in watermelon
2020.
Gimode, W., Bao, K., Fei, Zhangjun, McGregor, C.
:
Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication
2020.
Sun, X., Jiao, C., Schwaninger, H., Chao, C.T., Ma, Y., Duan, N., Khan, A., Ban, S., Xu, K., Cheng, L., Zhang, G.Y., Fei, Zhangjun
:
CFM1, a Member of the CRM-domain Protein Family, Functions in Chloroplast Group II Intron Splicing in Setaria viridis
2020.
Feiz, L., Asakura, Y., Mao, L., Strickler, Susan R., Fei, Zhangjun, Rojas, M., Barkan, A., Stern, David
:
Comprehensive transcriptome analysis and functional characterization of PR-5 for its involvement in tomato Sw-7 resistance to tomato spotted wilt tospovirus
2020.
Padmanabhan, C., Ma, Q., Shekasteband, R., Steward, K.S., Hutton, S.F., Scott, J.W., Fei, Zhangjun, Ling, K.S.
Sci Rep.
:
Genome sequence of Fusarium oxysporum f. sp. conglutinans, the etiological agent of cabbage Fusarium wilt
2020.
Yu, F., Zhang, W., Wang, S., Wang, H., Yu, L., Zeng, X., Fei, Zhangjun, Li, J.
Mol Plant Microbe Interact..
:
Deep Interrogation of Metabolism Using a Pathway-Targeted Click-Chemistry Approach
2020.
Hoki, J.S., Le, H.H., Mellott, K.E., Zhang, Y.K., Fox, B.W., Rodrigues, P.R., Yu, Y., Helf, M.J., Baccile, J.A., Schroeder, Frank
J Am Chem Soc..
:
Modular metabolite assembly in C. elegans depends on carboxylesterases and formation of lysosome-related organelles
2020.
Le, H.H., Wrobel, C.J.J., Cohen, S.M., Yu, J., Park, H., Helf, M.J., Curtis, B.J., Kruempel, J.C., Rodrigues, P.R., Hu, P.J., Sternberg, P.W., Schroeder, Frank
Elife.
:
An Untargeted Approach for Revealing Electrophilic Metabolites
2020.
Yu, Y., Le, H.H., Curtis, B.J., Wrobel, C.J.J., Zhang, B., Maxwell, D.N., Pan, J.Y., Schroeder, Frank
ACS Chem Biol..
:
Biased Gene Retention in the Face of Introgression Obscures Species Relationships
2020.
Forsythe, E.S., Nelson, Andrew D.L., Beilstein, M.A.
Genome Biol Evol.
12
:
1646–1663
An integrated peach genome structural variation map uncovers genes associated with fruit traits
2020.
Guo, J., Cao, K., Deng, C., Li, Y., Zhu, G., Fang, W., Chen, C., Wang, X., Wu, J., Guan, L., Wu, S., Guo, W., Yao, J.L., Fei, Zhangjun, Wang, L.
Genome Biol..
21
:
258
Modeling tissue-relevant Caenorhabditis elegans metabolism at network, pathway, reaction, and metabolite levels
2020.
Wilmaz, L.S., Li, X., Nanda, S., Fox, B., Schroeder, Frank, Walhout, A.J.
Mol Syst Biol.
10
:
Development on Citrus medica infected with ‘Candidatus Liberibacter asiaticus’ has sex-specific and -nonspecific impacts on adult Diaphorina citri and its endosymbionts
2020.
Coates, L.C., Mahoney, J., Ramsey, J.S., Warwick, E., Johnson, R., MacCoss, M.J., Krasnoff, S.B., Howe, K.J., Moulton, K., Saha, S., Mueller, Lukas A., Hall, D.G., Shatters, R.G., Heck, Michelle L., Slupsky, C.M.
PloS One.
15
:
QTL mapping of resistance to Fusarium oxysporum f. sp. niveum race 2 and Papaya ringspot virus in Citrullus amarus
2020.
Branham, S.E., Wechter, W.P., Ling, K., Chanda, B., Massey, L., Zhao, G., Guner, N., Bello, M., Kabelka, E., Fei, Zhangjun, Levi, A.
Theor Appl Genet..
133
:
677–687

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