Publications
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Blocking the Q -binding site of photosystem II by tenuazonic acid, a non-host-specific toxin of Alternaria alternata, activates singlet oxygen-mediated and EXECUTER-dependent signalling in Arabidopsis 2015
Chen, S., Kim, C., Lee, J.M., Lee, H.A., Fei, Z., Wang, L., and Apel, K.Plant Cell Environ -
Singlet oxygen-mediated signaling in plants: moving from flu to wild type reveals an increasing complexity 2013
Full text...Kim, C. and Apel, K.Photosynthesis Research 116, 455-464 -
O-1(2)-Mediated and EXECUTER-Dependent Retrograde Plastid-to-Nucleus Signaling in Norflurazon-Treated Seedlings of Arabidopsis thaliana 2013
Full text...Kim, C.H. and Apel, K.Molecular Plant 6, 1580-1591 -
The SCO2 protein disulphide isomerase is required for thylakoid biogenesis and interacts with LHCB1 chlorophyll a/b binding proteins which affects chlorophyll biosynthesis in Arabidopsis seedlings 2012
Full text...Tanz, S.K., Kilian, J., Johnsson, C., Apel, K., Small, I., Harter, K., Wanke, D., Pogson, B., and Albrecht, V.Plant J. 69, 743-75 -
The chloroplast division mutant caa33 of Arabidopsis thaliana reveals the crucial impact of chloroplast homeostasis on stress acclimation and retrograde plastid-to-nucleus signaling 2012
Full text...Simkova, K., Kim, C., Gacek, K., Baruah, A., Laloi, C. and Apel, K.Plant J. 69, 701-712 -
Arabidopsis light-dependent protochlorophyllide oxidoreductase A (PORA) is essential for normal plant growth and development 2012
Full text...Paddock, T., Lima, D., Mason, M.E., Apel, K. and Armstrong, G.A.Plant Mol. Biol. 78, 447-460 -
Chloroplasts of Arabidopsis are the source and a primary target of a plant-specific programmed cell death signaling pathway 2012
Full text...Kim, C., Meskauskiene, R., Zhang, S., Lee, K.P., Lakshmanan Ashok, M., Blajecka, K., Herrfurth, C., Feussner, I., and Apel, K.Plant Cell 24, 3026-3039 -
Arabidopsis light-dependent NADPH: protochlorophyllide oxidoreductase A (PORA) is essential for normal plant growth and development: an addendum 2012
Full text...Kim, C. and Apel, K.Plant Mol. Biol. 80, 237-24 -
FLU, a negative feedback regulator of tetrapyrrole biosynthesis, is physically linked to the final steps of the Mg++-branch of this pathway 2012
Full text...Kauss, D., Bischof, S., Steiner, S., Apel, K. and Meskauskiene, R.FEBS Lett. 586, 211-216 -
‘happy on norflurazon’ (hon) mutations implicate perturbance of plastid homeostasis with activating stress acclimatization and changing nuclear gene expression in norflurazon-treated seedlings 2011
Full text...Saini, G., Meskauskiene, R., Pijacka, W., Roszak, P., Sjogren, L.L.E., Clarke, A.K., Straus , M. and Apel, K.Plant J. 65, 690-702 -
Arabidopsis mutants reveal multiple singlet oxygen signaling pathways involved in stress response and development 2009
Full text...Baruah, A., Simkova, K., Apel, K. and Laloi, C.Plant Mol. Biol. 70, 547-563 -
Modulation of O-1(2)-mediated retrograde signaling by the PLEIOTROPIC RESPONSE LOCUS 1 (PRL1) protein, a central integrator of stress and energy signaling 2009
Full text...Baruah, A., Simkova, K., Hincha, D.K., Apel, K. and Laloi, C.Plant J. 60, 22-32 -
Characterization of soldat8, a Suppressor of Singlet Oxygen-Induced Cell Death in Arabidopsis Seedlings 2009
Full text...Coll, N.S., Danon, A., Meurer, J., Cho, W.K. and Apel, K.Plant Cell Physiol. 50, 707-718 -
O-1(2)-mediated retrograde signaling during late embryogenesis predetermines plastid differentiation in seedlings by recruiting abscisic acid 2009
Full text...Kim, C., Lee, K.P., Baruah, A., Nater, M., Gobel, C., Feussner, I., and Apel, K.P. Natl. Acad. Sci. USA 106, 9920-9924 -
A mutation in the Arabidopsis mTERF-related plastid protein SOLDAT10 activates retrograde signaling and suppresses 1O(2)-induced cell death 2009
Full text...Meskauskiene, R., Wursch, M., Laloi, C., Vidi, P.A., Coll, N.S., Kessler, F., Baruah, A., Kim, C. and Apel, K.Plant J. 60, 399-410 -
No single way to understand singlet oxygen signalling in plants 2008
Full text...Kim, C., Meskauskiene, R., Apel, K., and Laloi, C.EMBO Rep. 9, 435-439 -
Cross-talk between singlet oxygen- and hydrogen peroxide-dependent signaling of stress responses in Arabidopsis thaliana 2007
Full text...Laloi, C, Stachowiak, M., Pers-Kamczyc, E., Warzych, E., Murgia, I., and Apel, K.P. Natl. Acad. Sci. USA 104, 672-677 -
EXECUTER1- and EXECUTER2-dependent transfer of stress-related signals from the plastid to the nucleus of Arabidopsis thaliana 2007
Full text...Lee, K.P., Kim, C., Landgraf, F., and Apel, K.P. Natl. Acad. Sci. USA 104, 10270-10275 -
A genetic approach towards elucidating the biological activity of different reactive oxygen species in Arabidopsis thaliana 2006
Full text...Laloi, C., Przybyla, D., and Apel, K.J. Exp. Bot. 57, 1719-1724 -
Reactive oxygen signalling: the latest news 2004
Full text...Laloi, C., Apel, K., and Danon, A.Curr. Opin. Plant Biol. 7, 323-328 -
The Genetic basis of singlet oxygen-induced stress responses of Arabidopsis thaliana 2004
Full text...Wagner, D., Przybyla, D., op den Camp, R., Kim, C., Landgraf, F., Lee, K.P., Wursch, M., Laloi, C., Nater, M., Hideg, E., and Apel, K.Science 306, 1183-1185 -
Rapid induction of distinct stress responses after the release of singlet oxygen in Arabidopsis 2003
Full text...op den Camp, R.G., Przybyla, D., Ochsenbein, C., Laloi, C., Kim, C., Danon, A., Wagner, D., Hideg, E., Gobel, C., Fuessner, I., Nater, M., and Apel, K.Plant Cell 15, 2320-2332
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Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta 2016
Full text...Kanost, M.R., Arrese, E.L., Cao, X., Chen, Y.R., Chellapilla, S., Goldsmith, M.R., Grosse-Wilde, E., Heckel, D.G., Herndon, N., Jiang, H., et alInsect Biochem. Mol. Bio. 76, 118-147 -
Trichoplusia ni Kinesin-1 associates with AcMNPV nucleocapsid proteins and is required for the production of budded virus 2016
Full text...Biswas, S., G. W. Blissard, and D. A. TheilmannJournal of Virology 90, 3480-3495 -
Autographa californica multiple nucleopolyhedrovirus GP64 protein: Analysis of domain I and V amino acid interactions and membrane fusion activity 2015
Full text...Yu, Q., Blissard, G.W., Liu, T.X., Li, Z.Virology 488, 259-270 -
The immune signaling pathways of Manduca sexta 2015
Full text...Cao, X., Y. He, Y. Hu, Y. Wang, Y. R. Chen, B. Bryant, R. J. Clem, L. M. Schwartz, G. Blissard, and H. JiangInsect Biochem. Mol. Biol. 62, 64-74 -
Sequence conservation, phylogenetic relationships, and expression profiles of nondigestive serine proteases and serine protease homologs in Manduca sexta 2015
Full text...Cao, X., He, Y., Hu, Y., Zhang, X., Wang, Y., Zou, Z., Chen, Y., Blissard, G.W., Kanost, M.R., and Jiang, H.Insect Biochem. Mol. Biol. 62, 51-63 -
A genome-wide analysis of antimicrobial effector genes and their transcription patterns in Manduca sexta 2015
Full text...He, Y., Cao, X., Lia, K., Hua, Y., Chen, Y., Blissard, G., Kanost, M.R., and Jiang, H.Insect Biochem. Mol. Biol. 62, 23-37 -
Special Issue: Biological Insights from the Manduca sexta genome 2015
Full text...Kanost, M. R., and G. W. Blissard (ed.)Insect Biochem. Mol. Biol. 2015/05/24 ed, vol. 62 -
The vacuolar protein sorting genes in insects: A comparative genome view 2015
Full text...Li, Z., and Blissard, G.W.Insect Biochem. Mol. Biol. 62, 211-225 -
Structural features, evolutionary relationships, and transcriptional regulation of C-type lectin-domain proteins in Manduca sexta 2015
Full text...Rao, X-J., 1, Cao, X., He, Y., Hu, Y., Zhang, X., Chen, Y., Blissard, G., Kanost, M.R., Yu, X-Q., and Jiang, H.Insect Biochem. Mol. Biol. 62, 75-85 -
Autographa californica multiple nucleopolyhedrovirus GP64 protein: Analysis of domain I and V amino acid interactions and membrane fusion activity 2015
Full text...Yu, Q., G. W. Blissard, T. X. Liu, and Z. Li.Virology 488, 259-270 -
Analysis of chitin-binding proteins from Manduca sexta provides new insights into evolution of peritrophin A-type chitin-binding domains in insects 2015
Full text...Tetreau, G., N. T. Dittmer, X. Cao, S. Agrawal, Y. R. Chen, S. Muthukrishnan, J. Haobo, G. W. Blissard, M. R. Kanost, and P. Wang.Insect Biochem. Mol. Biol. 62, 127-141 -
Cellular VPS4 is required for efficient entry and egress of budded virions of Autographa californica multiple nucleopolyhedrovirus 2012
Full text...Li, Z., and Blissard, G.W.J. Virol. 86, 459-472 -
Functional analysis of the Autographa californica multiple nucleopolyhedrovirus GP64 terminal fusion loops and interactions with membranes 2012
Full text...Dong, S., and Blissard, G.W.J. Virol. 86, 9617-9628 -
Autographa californica multiple nucleopolyhedrovirus GP64 protein: Roles of histidine residues in triggering membrane fusion and fusion pore expansion 2011
Full text...Li, Z., and Blissard, G.W.J. Virol. 85, 12492-12504 -
Correction: BTI-Tnao38, a new cell line derived from Trichoplusia ni, is permissive for AcMNPV infection and produces high levels of recombinant proteins 2012
Full text...Hashimoto, Y., Zhang, S., Zhang, S., Chen, Y.R., and Blissard, G.W.BMC Biotechnol 12:12 -
The Autographa californica multiple nucleopolyhedrovirus lef-5 gene is required for productive infection 2011
Full text...Su, J., Lung, O., and Blissard, G.W.Virology 416, 54-64 -
Transcriptome responses of the host, Trichoplusia ni, to infection by the baculovirus, Autographa californica Multiple Nucleopolyhedrovirus (AcMNPV) 2014
Full text...Chen, Y. R., Zhong, S., Fei, Z., Gao, S., Zhang, S., Li, Z., Wang, P., and Blissard, G.W.J. Virol. 88,, 13781-13797 -
Baculovirus GP64 disulfide bonds: the intermolecular disulfide bond of Autographa californica multicapsid nucleopolyhedrovirus GP64 is not essential for membrane fusion and virion budding 2010
Full text...Li, Z., and Blissard, G.W.J. Virol. 84, 8584-8595 -
Ao38, a new cell line from eggs of the black witch moth, Ascalapha odorata (Lepidoptera: Noctuidae), is permissive for AcMNPV infection and produces high levels of recombinant proteins 2010
Full text...Hashimoto, Y., Zhang, S., and Blissard, G.W.BMC Biotechnol. 10, 50 -
The pre-transmembrane domain of the Autographa californica multicapsid nucleopolyhedrovirus GP64 protein is critical for membrane fusion and virus infectivity 2009
Full text...Li, Z., and Blissard, G.W.J. Virol. 83, 10993-11004 -
The Autographa californica multicapsid nucleopolyhedrovirus GP64 protein: analysis of transmembrane domain length and sequence requirements 2009
Full text...Li, Z., and Blissard, G.W.J. Virol. 83, 4447-4461 -
Baculoviruses: Molecular Biology of Nucleopolyhedroviruses 2008
Full text...Theilmann, D.A., and Blissard, G.WDesk Encyclopedia of General Virology (Mahy, B.W.J. and van Regenmortel, M. eds) Oxford, Elsevier, 434-444 -
Functional analysis of the transmembrane (TM) domain of the Autographa californica multicapsid nucleopolyhedrovirus GP64 protein: Substitution of heterologous TM domains 2008
Full text...Li, Z., and Blissard, G.W.J. Virol. 82, 3329-3341 -
Display of heterologous proteins ongp64null baculovirus virions and enhanced budding mediated by a vesicular stomatitis virus G-stem construct 2008
Full text...Zhou, J., and Blissard, G.W.J. Virol. 82, 1368-1377 -
Identification of a GP64 subdomain involved in receptor binding by budded virions of the baculovirus Autographica californica multicapsid nucleopolyhedrovirus 2008
Full text...Zhou, J., and Blissard, G.W.J. Virol. 82, 4449-4460 -
The AcMNPV pp31 gene is not essential for productive AcMNPV replication or late gene transcription but appears to increase levels of most viral transcripts 2007
Full text...Yamagishi, J., Burnett, E.D., Harwood, S.H., and Blissard, G.W.Virol. 365, 34-47 -
Insect cell culture and biotechnology 2007
Full text...Granados, R.R., Li, G., and Blissard, G.W.Virol. Sinicia 365, 34-47 -
Mapping the conformational epitope of a neutralizing antibody (AcV1) directed against the AcMNPV GP64 protein 2006
Full text...Zhou, J., and Blissard, G.W.Virol. 352, 427-437 -
On the classification and nomenclature of baculoviruses: A proposal for revision 2006
Full text...Jehle, J.A., Blissard, G.W., Bonning, B.C., Cory, J.S., Herniou, E.A., Rohrmann, G.F., Theilmann, D.A., Thiem, S.M., and Vlak, J.M.Virol. 151, 1257-1266 -
Persistent Gene Expression in Mouse Nasal Epithelia Following Feline Immunodeficiency Virus-based Vector Gene Transfer 2005
Full text...Sinn, P. L., Burnight, E.R., Hickey, M.A., Blissard, G.W., and McCray, P.B.J. Virol. 79, 12818-12827 -
A Cellular Drosophila melanogaster Protein with Similarity to Baculovirus F Envelope Fusion Proteins 2005
Full text...Lung, O., and Blissard, G.W.J. Virol. 79, 7979-7989 -
Baculoviridae 2005
Full text...Theilmann, D.A., Blissard, G.W., Bonning, B., Jehle, J., O'Reilly, D.R., Rohrmann, G.F., Thiem, S., and Vlak, J.M.Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses (H. V. Van Regenmortel, D.H.L. Bishop, M. H. Van Regenmortal and C.M. Fauquet, eds.) Elsevier, NY 0:, 177-185 -
Palmitoylation of theAutographa californica multicapsid nucleopolyhedrovirus envelope glycoprotein GP64: mapping, functional studies, and lipid rafts 2003
Full text...Zhang, S. X. X., Han, Y., and Blissard, G.W.J. Virol. 77, 6265-6273 -
Ac23, an envelope fusion protein homolog in the baculovirus Autographa californica multicapsid nucleopolyhedrovirus, is a viral pathogenicity factor 2003
Full text...Lung, O. Y., Cruz Alvarez, M., and Blissard, G.W.J. Virol. 77, 328-339 -
Analysis of an Autographa californica nucleopolyhedrovirus lef-11 knockout: LEF-11 is essential for viral DNA replication 2002
Full text...Lin, G., and Blissard, G.W.J. Virol. 76, 2770-2779 -
Analysis of an Autographa californica Multicapsid Nucleopolyhedrovirus lef-6-Null Virus: LEF-6 is not essential for viral replication but appears to accelerate late gene transcription 2002
Full text...Lin, G., and Blissard, G.W.J. Virol. 76, 5503-5514 -
Pseudotyping Autographa californica Multicapsid Nucleopolyhedrovirus (AcMNPV): F proteins from group II NPVs are functionally analogous to AcMNPV GP64 2002
Full text...Lung, O., Westenberg, M., Vlak, J.M., Zuidema, D., and Blissard, G.W.J. Virol. 76, 5729-5736 -
Stable cell lines expressing baculovirus P35: Resistance to apoptosis and nutrient stress, and increased glycoprotein secretion 2001
Full text...Lin, G., Li, G., Granados, R.R., and Blissard, G.W.Vitro Cellular & Developmental Biology - Animal 37, 293-302 -
Expression and localization of LEF-11 in Autographa californica nucleopolyhedrovirus infected Sf9 cells 2001
Full text...Lin, G., Slack, J.M., and Blissard, G.W.J. Gen. Virol. 82, 2289-2294 -
A GP64null baculovirus pseudotyped with Vesicular Stomatitis Virus G protein 2001
Full text...Mangor, J. T., Monsma, S.A., Johnson, M.C., and Blissard, G.W.J. Virol. 75, 2544-2556 -
Measurement of membrane fusion activity from viral membrane fusion proteins based on a fusion-dependent promoter induction system in insect cells 2001
Full text...Slack, J. M., and Blissard, G.W.J. Gen. Virol. 82, 2519-2529 -
A Novel Baculovirus Envelope Fusion Protein with a Proprotein Convertase Cleavage Site 2000
Full text...IJkel, W. F. J., Westenberg, M., Goldbach, R.W., Blissard, G.W., Vlak, J.M., and Zuidema, D.Virol. 275, 30-41
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Comprehensive Tissue-Specific Transcriptome Analysis Reveals Distinct Regulatory Programs during Early Tomato Fruit Development 2016
Full text...Pattison, R.J., Csukasi, F., Zheng, Y., Fei, Z., van der Knaap, E., Catala, CPlant Physiology 10.1104, pp.15.00287 -
Mechanisms regulating auxin action during fruit development 2014
Full text...Pattison, R. J., Csukasi, F., and Catalá, C.Physiologia Plantarum 151, 62-72 -
Evaluating auxin distribution in tomato (Solanum lycopersicum) through an analysis of the PIN and AUX/LAX gene families 2012
Full text...Pattison, R.J., and Catala, C.Plant J. 70, 585-598 -
Towards characterization of the glycoproteome of tomato (Solanum lycopersicum) fruit using Concanavalin A lectin affinity chromatography and LC-MALDI-MS/MS analysis 2011
Full text...Catala, C., Howe, K.J., Hucko, S., Rose, J.K.C., and Thannhauser, T.W.Proteomics 11, 1530-1544 -
A Tomato Endo-Β-1,4-glucanase, SlCel9C1, Represents a Distinct Subclass with a New Family of Carbohydrate Binding Modules (CBM49) 2007
Full text...Urbanowicz, B.R., and Catala, C.J. Biol. Chem. 282, 12066-12074 -
Sample extraction techniques for enhanced proteomic analysis of plant tissues 2006
Full text...Isaacson, T., Damasceno, C.M.B., Saravanan, R.S., He, Y., and Catala, C.Nature Protocols 1, 769-774 -
Characterization of a new xyloglucan endotransglucosylase/hydrolase (XTH) from ripening tomato fruit and implications for the diverse modes of enzymic action 2006
Full text...Saladi, M., Rose, J.K.C., Cosgrove, D.J., and Catala, C.Plant J. 47, 282-295 -
The plot thickens: new perspectives of primary cell wall modification 2004
Full text...Rose J.K., Saladi, M., and Catala, C.Curr. Opin. Plant Biol. 7, 296-301 -
Plant cell wall disassembly. 2003
Full text...Rose J.K.C., and Catala, C.In The Plant Cell Wall. Annual Plant Reviews Series (Ed. J.K.C. Rose, Pub). Blackwell Publishing 264-324 -
Characterization of a tomato xyloglucan endotransglycosylase gene that is down-regulated by auxin in etiolated hypocotyls. Plant Physiol., 127, 1180-1192 2001
Full text...Catala, C., Rose, J.K.C., York, W.S., Albersheim, P., Darvill, A.G., and Bennett, A.B.Plant Physiol. 127, 1180-1192 -
Auxin-regulated genes encoding cell wall modifying proteins are expressed during early tomato fruit growth 2000
Full text...Catala, C., Rose, J.K.C., and Bennett, A.B.Plant Physiol. 122, 527-534 -
Cloning and sequence analysis of TomCel8; a new plant endo-1,4-Β-d-glucanase gene, encoding a protein with a putative carbohydrate binding domain (Accession No. AF098292) 1998
Full text...Catala, C.Plant Physiol. 118, 1535 -
Auxin-induction and spatial localization of a novel endo-1,4-Β-d-glucanase and a xyloglucan endotransglycosylase in tomato hypocotyls 1997
Full text...Catala, C., Rose, J.K.C., and Bennett, A.B.Plant J. 12, 417-426
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Identification of multiple salicylic acid-binding proteins using two high throughput screens 2015
Full text...Manohar, M., Tian, M., Moreau, M., Park, S-W., Choi, H.W., Fei, Z., Friso, G., Asif, M., Manosalva, P., von Dahl, C.C., Shi, K., Ma, S., Dinesh-Kumar, S.P., O'Doherty, I., Schroeder, F.C., van Wijk, K.J., and Klessig, D.F.Front. Plant Sci. 5, 777 -
Transcriptome responses of the host, Trichoplusia ni, to infection by the baculovirus, Autographa californica Multiple Nucleopolyhedrovirus (AcMNPV) 2014
Full text...Chen, Y. R., Zhong, S., Fei, Z., Gao, S., Zhang, S., Li, Z., Wang, P., and Blissard, G.W.J. Virol. 88, 13781-13797 -
Complete Genome Sequence of a Novel Genotype of Squash Mosaic Virus Infecting Squash in Spain 2015
Full text...Li, R., Gao, S., Berendsen, S., Fei, Z., and Ling, K-S.Genome Announc. 3(1), e01583-14 -
A Zinc Finger Protein Regulates Flowering Time and Abiotic Stress Tolerance in Chrysanthemum by Modulating Gibberellin Biosynthesis 2014
Full text...Yang, Y., Ma, C., Xu, Y., Wei, Q., Imtiaz, M., Lan, H., Gao, S., Cheng, L., Wang, M., Fei, Z., Hong, B., and Gao, J.The Plant Cell tpc.114.124867, tpc.114.124867 -
Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress 2010
Full text...Joshi, V., Joung, J.G., Fei, Z. and Jander, G.Amino Acids 39, 933-947 -
Nonuniform gene expression pattern detected along the longitudinal axis in the matured rice leaf 2015
Full text...Li, N., Chen, Y-R., Ding, Z., Li, P., Wu Y., Zhang, A., Yu, S., Giovannoni, J.J., Fei, Z., Zhang, W., Xiang, J.Z., Xu, C., Liu, B., and Zhong, S.Scientific Reports 5, Article number: 8015 -
Gibberellin-induced changes in the transcriptome of grapevine (Vitis labrusca × V. vinifera) cv. Kyoho flowers 2015
Full text...Cheng, C., Jiao, C., Singer, S.D., Gao, M., Xu, X., Zhou, Y., Li, Z., Fei, Z., Wang, Y., and Wang, XBMC Genomics 16, 128 -
Molecular characterization and transcriptome analysis of orange head Chinese cabbage (Brassica rapa L. ssp. pekinensis).
Full text...Zhang, J., Yuan, H., Fei, Z., Pogson, B.J., Zhang, L., and L., Li.Planta DOI 10.1007/s00425-015-2262-z -
Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits 2015
Full text...Freilich, S., Lev, S., Gonda, I., Reuveni, E., Portnoy, V., Oren, E., Lohse, M., Galpaz, N., Bar, E., Tzuri, G., Wissotsky, G., Meir, A., Burger, J., Tadmor, Y., Schaffer, A., Fei, Z., Giovannoni, J., Lewinsohn, E., and Katzir, N.BMC Plant Biology 15, 71 -
A “golden” SNP in CmOr governs fruit flesh color of melon (Cucumis melo) 2015
Full text...Tzuri, G., Zhou, X., Chayut, N., Yuan, H., Portnoy, V., Meir, A., Sa'ar, U., Baumkoler, F., Mazourek, M., Lewinsohn, E., Fei, Z., Schaffer, A.A., Li, L., Burger, J., Katzir, N., and Tadmor, Y.Plant J. Accepted Article, DOI: 10.1111/tpj.12814 -
Blocking the Q -binding site of photosystem II by tenuazonic acid, a non-host-specific toxin of Alternaria alternata, activates singlet oxygen-mediated and EXECUTER-dependent signalling in Arabidopsis 2015
Full text...Chen, S., Kim, C., Lee, J.M., Lee, H.A., Fei, Z., Wang, L., and Apel, K.Plant Cell Environ. -
The PH gene determines fruit acidity and contributes to the evolution of sweet melons 2014
Full text...Cohen, S., Itkin, M., Yeselson, Y., Tzuri, G., Portnoy, V., Harel-Baja, R., Lev, S., Sa'ar, U., Davidovitz-Rikanati, R., Baranes, N., Bar, E., Wolf, D., Petreikov, M., Shen, S., Ben-Dor, S., Rogachev, I., Aharoni, A., Ast, T., Schuldiner, M., Belausov, E., Eshed, R., Ophir, R., Sherman, A., Frei, B., Neuhaus, H.E., Xu, Y., Fei, Z., Giovannoni, J., Lewinsohn, E., Tadmor, Y., Paris, H.S., Katzir, N., Burger, Y., and Schaffer, A.A.Nature Communications 5, 4026 -
Evolutionary and expression analyses of basic zipper transcription factors in the highly homozygous model grape PN40024 (Vitis vinifera L.) 2014
Full text...Gao, M., Zhang, H.J., Guo, C.L., Cheng, C.X., Guo, R.R., Mao, L.Y., Fei, Z.J., and Wang, X.PPlant Molecular Biology Reporter 32, 1085-1102 -
The genome of the stress-tolerant wild tomato species Solanum pennellii 2014
Full text...Bolger, A., Scossa, F., Bolger, M.E., Lanz, C., Maumus, F., Tohge, T., Quesneville, H., Alseekh, S., Sorensen, I., Lichtenstein, G., Fich, E.A., Conte, M., Keller, H., Schneeberger, K., Schwacke, R., Ofner, I., Vrebalov, J., Xu, Y., Osorio, S., Aflitos, S.A., Schijlen, E., Jimenez-Gomez, J.M., Ryngajllo, M., Kimura, S., Kumar, R., Koenig, D., Headland, L.R., Maloof, J.N., Sinha, N., van Ham, R.C., Lankhorst, R.K., Mao, L., Vogel, A., Arsova, B., Panstruga, R., Fei, Z., Rose, J.K., Zamir, D., Carrari, F., Giovannoni, J.J., Weigel, D., Usadel, B., and Fernie, A.R.Nature Genetics 46, 1034-1038 -
Draft genome of the kiwifruit Actinidia chinensis 2013
Full text...Huang, S., Ding, J., Deng, D., Tang, W., Sun, H., Liu, D., Zhang, L., Niu, X., Zhang, X., Meng, M., Yu, J., Liu, J., Han, Y., Shi, W., Zhang, D., Cao, S., Wei, Z., Cui, Y., Xia, Y., Zeng, H., Bao, K., Lin, L., Min, Y., Zhang, H., Miao, M., Tang, X., Zhu, Y., Sui, Y., Li, G., Sun, H., Yue, J., Sun, J., Liu, F., Zhou, L., Lei, L., Zheng, X., Liu, M., Huang, L., Song, J., Xu, C., Li, J., Ye, K., Zhong, S., Lu, B-R., He, G., Xiao, F., Wang, H-L., Zheng, H., Fei, Z., and Liu, Y.Nature Communications 4, 2640 -
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening 2013
Full text...Zhong, S., Fei, Z., Chen, Y.R., Zheng, Y., Huang, M., Vrebalov, J., McQuinn, R., Gapper, N., Liu, B., Xiang, J., Shao, Y., and Giovannoni, J.J.Nature Biotechnology 31, 154-159 -
The tomato genome sequence provides insights into fleshy fruit evolution 2012
Full text...The Tomato Genome ConsortiumNature 485, 635-641 -
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions 2012
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Transcriptomic analysis reveals tomato genes whose expression is induced specifically during effector-triggered immunity and identifies the Epk1 protein kinase which is required for the host response to three bacterial effector proteins 2014
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Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity 2013
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Strand-specific RNA sequencing uncovers chloroplast ribonuclease functions 2013
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Enabling proteomic studies with RNA-Seq: The proteome of tomato pollen as a test case 2012
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Antagonistic Basic Helix-Loop-Helix/bZIP Transcription Factors Form Transcriptional Modules That Integrate Light and Reactive Oxygen Species Signaling in Arabidopsis 2013
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The Transcriptome of the baculovirus Autographa californica multiple nucleopolyhedrovirus in Trichoplusia ni cells 2013
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Catabolism of L-methionine in the formation of sulfur and other volatiles in melon (Cucumis melo L.) fruit 2013
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A snapshot of the emerging tomato genome sequence 2009
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Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit 2013
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Genomic Organization, Phylogenetic Comparison and Differential Expression of the SBP-Box Family Genes in Grape 2013
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Genome-wide identification and analysis of the SBP-box family genes in apple (Malus x domestica Borkh.) 2013
Full text...Li, J., Hou, H.M., Li, X.Q., Xiang, J., Yin, X.J., Gao, H., Zheng, Y., Bassett, C.L., and Wang, X.P.Plant Physiol. Bioch. 70, 100-114 -
Genome-wide identification and analysis of the aldehyde dehydrogenase (ALDH) gene superfamily in apple (Malus x domestica Borkh.) 2013
Full text...Li, X.Q., Guo, R.R., Li, J., Singer, S.D., Zhang, Y.C., Yin, X.J., Zheng, Y., Fan, C.H., and Wang, X.P.Plant Physiol. Bioch. 71, 268-282 -
Catalyzing plant science research with RNA-seq. 2013
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Incomplete transfer of accessory loci influencing SbMATE expression underlies genetic background effects for aluminum tolerance in sorghum 2013
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Integrative Analysis of miRNA and mRNA Profiles in Response to Ethylene in Rose Petals during Flower Opening 2013
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An NAC Transcription Factor Controls Ethylene-Regulated Cell Expansion in Flower Petals 2013
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A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity 2013
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RadishBase: A database for genomics and genetics of radish 2013
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Comprehensive analysis of expressed sequence tags from cultivated and wild radish (Raphanus spp.) 2013
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Proteomic analysis of chromoplasts from six crop species reveals insights into chromoplast function and development 2013
Full text...Wang, Y.Q., Yang, Y., Fei, Z.J., Yuan, H., Fish, T., Thannhauser, T.W., Mazourek, M., Kochian, L.V., Wang, X.W., and Li, L.Journal of Experimental Botany 64, 949-961 -
Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress 2013
Full text...Xu, Y.J., Gao, S., Yang, Y.J., Huang, M.Y., Cheng, L.N., Wei, Q., Fei, Z.J., Gao, J.P., and Hong, B.BMC Genomics 14, 662 -
A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters 2012
Full text...Chen, Y.R., Zheng, Y., Liu, B., Zhong, S., Giovannoni, J., and Fei, Z.Plant Methods 8, 41 -
Characterization of erysiphe necator-responsive genes in Chinese wild Vitis quinquangularis 2012
Full text...Gao, M., Niu, J., Zhao, S.P., Jiao, C., Xu, W.R., Fei, Z.J., and Wang, X.PInt. J. Mol. Sci. 13, 11497-1151 -
Identification of genes differentially expressed in grapevine associated with resistance to Elsinoe ampelina through suppressive subtraction hybridization 2012
Full text...Gao, M., Wang, Q., Wan, R., Fei, Z.J., and Wang, X.P.Plant Physiol. Bioch. 58, 253-268 -
Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum 2012
Full text...Huang, S.X., Gao, Y.F., Liu, J.K., Peng, X.L., Niu, X.L., Fei, Z.J., Cao, S.Q., and Liu, Y.S.Molecular Genetics and Genomics 287, 495-513 -
Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation. 2012
Full text...Lee, J.M., Joung, J.G., McQuinn, R., Chung, M.Y., Fei, Z., Tieman, D., Klee, H., and Giovannoni, J.The Plant J. 70, 191-204 -
High frequency oligonucleotides: targeting active gene (HFO-TAG) markers revealed wide genetic diversity among Citrullus spp. accessions useful for enhancing disease or pest resistance in watermelon cultivars 2012
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Deep sequencing of small RNAs in tomato for virus and viroid identification and strain differentiation 2012
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Transcriptome profiling and methyl homeostasis of an Arabidopsis mutant deficient in S-adenosylhomocysteine hydrolase1 (SAHH1) 2012
Full text...Ouyang, B., Fei, Z.J., Joung, J.G., Kolenovsky, A., Koh, C.S., Nowak, J., Caplan, A., Keller, W.A., Cui, Y.H., Cutler, A.J., and Tsang, E.W.T.Plant Mol. Biol. 79, 315-331 -
Genome-Wide Identification and Analysis of the TIFY Gene Family in Grape 2012
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Genome-Wide Identification and Analysis of Grape Aldehyde Dehydrogenase (ALDH) Gene Superfamily 2012
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Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis) 2011
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Regulatory control of high levels of carotenoid accumulation in potato tubers 2011
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High-throughput Illumina strand-specific RNA sequencing library preparation 2011
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The charophycean green algae provide insights into the early origins of plant cell walls 2011
Full text...Sorensen, I., Pettolino, F.A., Bacic, A., Ralph, J., Lu, F.C., O'Neill, M.A., Fei, Z.Z., Rose, J.K.C., Domozych, D.S., and Willats, W.G.T.Plant J. 68, 201-211 -
iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences 2011
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Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development 2011
Full text...Rohrmann, J., Tohge, T., Alba, R., Osorio, S., Caldana, C., McQuinn, R., Arvidsson, S., van der Merwe, M.J., Riano-Pachon, D.M., Mueller-Roeber, B., Fei, Z., Nesi, A.N., Giovannoni, J.J., and Fernie, A.R.Plant J. 68, 999-1013 -
Systems biology of tomato fruit development: Combined transcript, protein, and metabolite analysis of tomato transcription factor (nor, rin) and ethylene receptor (Nr) mutants reveals novel regulatory interactions 2011
Full text...Osorio, S., Alba, R., Damasceno, C.M.B., Lopez-Casado, G., Lohse, M., Zanor, M.I., Tohge, T., Usadel, B., Rose, J.K.C., Fei, Z.J., Giovannoni, J.J., and Fernie, A.R.Plant Physiol. 157, 405-425 -
Transcriptional profiling of watermelon during its incompatible interaction with Fusarium oxysporum f. sp niveum 2011
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RNA-Seq improves annotation of protein-coding genes in the cucumber genome 2011
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Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles 2011
Full text...Guo, S.G., Liu, J.A., Zheng, Y., Huang, M.Y., Zhang, H.Y., Gong, G.Y., He, H.J., Ren, Y., Zhong, S.L., Fei, Z.J., and Xu, Y.BMC Genomics 12, 454 -
Genomic and functional genomic resources of melon 2011
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Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics. 2011
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Metabolism of soluble sugars in developing melon fruit: a global transcriptional view of the metabolic transition to sucrose accumulation 2011
Full text...Dai, N., Cohen, S., Portnoy, V., Tzuri, G., Harel-Beja, R., Pompan-Lotan, M., Carmi, N., Zhang, G.F., Diber, A., Pollock, S., Karchi, H., Yeselson, Y., Petreikov, M., Shen, S., Sahar, U., Hovav, R., Lewinsohn, E., Tadmor, Y., Granot, D., Ophir, R., Sherman, A., Fei, Z.J., Giovannoni, J., Burger, Y. , Katzir, N., and Schaffer, A.A.Plant Mol. Biol. 76, 1-18 -
Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon 2011
Full text...Clepet, C., Joobeur, T., Zheng, Y., Jublot, D., Huang, M.Y., Truniger, V., Boualem, A., Hernandez-Gonzalez, M.E., Dolcet-Sanjuan, R., Portnoy, V., Mascarell-Creus, A., Cano-Delgado, A.I., Katzir, N., Bendahmane, A., Giovannoni, J.J., Aranda, M.A., Garcia-Mas, J., and Fei, Z.J.BMC Genomics 12, 252 -
High-frequency oligonucleotides in watermelon expressed sequenced tag-unigenes are useful in producing polymorphic polymerase chain reaction markers among watermelon genotypes. 2010
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A genetic map of melon highly enriched with fruit quality QTLs and EST markers, including sugar and carotenoid metabolism genes 2010
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Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types 2010
Full text...Guo, S.G., Zheng, Y., Joung, J.G., Liu, S.Q., Zhang, Z.H., Crasta, O.R., Sobral, B.W., Xu, Y., Huang, S.W., and Fei, Z.J.BMC Genomics 11, 384 -
Transcriptional profiles of drought-responsive genes in modulating transcription signal transduction, and biochemical pathways in tomato 2010
Full text...Gong, P.J., Zhang, J.H., Li, H.X., Yang, C.X., Zhang, C.J., Zhang, X.H., Khurram, Z., Zhang, Y.Y., Wang, T.T., Fei, Z.J., and Ye, Z.B.Journal of Experimental Botany 61, 3563-3575 -
Use of homologous and heterologous gene expression profiling tools to characterize transcription dynamics during apple fruit maturation and ripening 2010
Full text...Costa, F., Alba, R., Schouten, H., Soglio, V., Gianfranceschi, L., Serra, S., Musacchi, S., Sansavini, S., Costa, G., Fei, Z.J., and Giovannoni, J.BMC Plant Biol. 10, 229 -
Identification of cell cycle-related regulatory motifs using a kernel canonical correlation analysis 2009
Full text...Rhee, J.K., Joung, J.G., Chang, J.H., Fei, Z., and Zhang, B.T.BMC Genomics 10, S3-S29 -
Plant MetGenMAP: an integrative analysis system for plant systems biology 2009
Full text...Joung, J.G., Corbett, A.M., Fellman, S.M., Tieman, D.M., Klee, H.J., Giovannoni , J.J., and Fei, Z.Plant Physiol. 151, 1758-1768 -
Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model 2009
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Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information 2009
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lavour compounds in tomato fruits: identification of loci and potential pathways affecting volatile composition. 2009
Full text...Mathieu, S., Cin, V.D., Fei, Z.J., Li, H., Bliss, P., Taylor, M.G., Klee, H.J., and Tieman, D.M.Journal of Experimental Botany 60, 325-337 -
The genome of the cucumber, Cucumis sativus L 2009
Full text...Huang, S.W., Li, R.Q., Zhang, Z.H., Li, L., Gu, X.F., Fan, W., Lucas, W.J., Wang, X.W., Xie, B.Y., Ni, P.X., Ren, Y.Y., Zhu, H.M., Li, J., Lin, K., Jin, W.W., Fei, Z.J., Li, G.C., Staub, J., Kilian, A., van der Vossen, E.A.G., Wu, Y., Guo, J., He, J., Jia, Z.Q., Ren, Y., Tian, G., Lu, Y., Ruan, J., Qian, W.B., Wang, M.W., Huang, Q.F., Li, B., Xuan, Z.L., Cao, J.J., Asan, Wu, Z.G., Zhang, J.B., Cai, Q.L., Bai, Y.Q., Zhao, B.W., Han, Y.H., Li, Y., Li, X.F., Wang, S.H., Shi, Q.X., Liu, S.Q., Cho, W.K., Kim, J.Y., Xu, Y., Heller-Uszynska, K., Miao, H., Cheng, Z.C., Zhang, S.P., Wu, J., Yang, Y.H., Kang, H.X., Li, M., Liang, H.Q., Ren, X.L., Shi, Z.B., Wen, M., Jian, M., Yang, H.L., Zhang, G.J., Yang, Z.T., Chen, R., Liu, S.F., Li, J.W., Ma, L.J., Liu, H., Zhou, Y., Zhao, J., Fang, X.D., Li, G.Q., Fang, L., Li, Y.R., Liu, D.Y., Zheng, H.K., Zhang, Y., Qin, N., Li, Z., Yang, G.H., Yang, S., Bolund, L., Kristiansen, K., Zheng, H.C., Li, S.C., Zhang, X.Q., Yang, H.M., Wang, J., Sun, R.F., Zhang, B.X., Jiang, S.Z., Wang, J., Du, Y.C., and Li, S.G.Nature Genetics 41, 1275-U1229 -
Identification and characterisation of resistance gene analogues from wild Chinese Vitis species 2008
Full text...Wang, X.P., Wang, Y.J., and Fei, Z.J.J. Hortic. Sci. Biotech. 83, 345-350 -
Identification of Solanum habrochaites loci that quantitatively influence tomato fruit ripening-associated ethylene emissions. 2009
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Genetic association of ETHYLENE-INSENSITIVE3-like sequence with the sex-determining M locus in cucumber (Cucumis sativus L.) 2008
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Small RNAs in tomato fruit and leaf development 2008
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Identification of salt stress regulated genes in tomato seedlings by suppression subtracted hybridization and microarray analysis 2007
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MicroTom 2007
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Tomato Expression Database (TED): A Suite of Data Presentation and Analysis Tools. 2006
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Impact of intestinal colonization and invasion on the E. histolytica transcriptome 2006
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Nonuniform gene expression pattern detected along the longitudinal axis in the matured rice leaf 2015
Full text...Li, N., Chen, Y-R., Ding, Z., Li, P., Wu Y., Zhang, A., Yu, S., Giovannoni, J.J., Fei, Z., Zhang, W., Xiang, J.Z., Xu, C., Liu, B., and Zhong, S.Scientific Reports 5, Article number: 8015 -
Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits 2015
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Selection of low-variance expressed Malus x domestica (apple) genes for use as quantitative PCR reference genes (housekeepers). Tree Genetics & Genomes, 10, 751-759 2014
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The PH gene determines fruit acidity and contributes to the evolution of sweet melons 2014
Full text...Cohen, S., Itkin, M., Yeselson, Y., Tzuri, G., Portnoy, V., Harel-Baja, R., Lev, S., Sa'ar, U., Davidovitz-Rikanati, R., Baranes, N., Bar, E., Wolf, D., Petreikov, M., Shen, S., Ben-Dor, S., Rogachev, I., Aharoni, A., Ast, T., Schuldiner, M., Belausov, E., Eshed, R., Ophir, R., Sherman, A., Frei, B., Neuhaus, H.E., Xu, Y., Fei, Z., Giovannoni, J., Lewinsohn, E., Tadmor, Y., Paris, H.S., Katzir, N., Burger, Y., and Schaffer, A.A.Nature Communications 5, 4026 -
The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics, 46, 1034-1038 2014
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Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening. Nature Biotechnology, 31, 154-159 2013
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The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions 2012
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Biomarker development for external CO2 injury prediction in apples through exploration of both transcriptome and DNA methylation changes. AoB Plants, 5, plt021 2013
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Loss of Plastoglobule Kinases ABC1K1 and ABC1K3 Causes Conditional Degreening, Modified Prenyl-Lipids, and Recruitment of the Jasmonic Acid Pathway. Plant Cell, 25, 1818-1839 2013
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Altered chloroplast development and delayed fruit ripening caused by mutations in a zinc metalloprotease at the lutescent2 locus of tomato 2012
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Molecular analysis of softening and ethylene synthesis and signaling pathways in a non-softening apple cultivar, ‘Honeycrisp’ and a rapidly softening cultivar, ‘McIntosh’ 2012
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Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation 2012
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The tomato UV-damaged DNA-binding protein-1 (DDB1) is implicated in pathogenesis-related (PR) gene expression and resistance to Agrobacterium tumefaciens 2012
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The tomato MADS-box transcription factor RIPENING INHIBITOR interacts with promoters involved in numerous ripening processes in a COLORLESS NONRIPENING-dependent Manner 2011
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Developmental and feedforward control of the expression of folate biosynthesis genes in tomato fruit 2010
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Biology and genetic engineering of fruit maturation for enhanced quality and shelf-life 2009
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Sequencing and comparative analysis of a conserved syntenic segment in the Solanaceae 2008
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Altered plastid levels and potential for improved fruit nutrient content by downregulation of the tomato DDB1-interacting protein CUL4 2008
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Transcriptomic and reverse genetic analyses of branched-chain fatty acid and acyl sugar production in Solanum pennellii andNicotiana benthamiana. Plant Physiol., 148, 1830-1846 2008
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The molecular and biochemical basis for varietal variation in sesquiterpene content in melon (Cucumis melo L.) rinds 2008
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Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato 2008
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Molecular biology of ethylene during tomato fruit development and maturation 2008
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Amino acid substitutions in homologs of the STAY-GREEN protein are responsible for the green-flesh and chlorophyll retainer mutations of tomato and pepper 2008
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Tomato gamma-glutamyl hydrolases: Expression, characterization, and evidence for heterodimer formation 2008
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A Physical Map of the Highly Heterozygous Populus Genome: Integration With the Genome Sequence and Genetic Map and Analysis of Haplotype Variation 2007
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Ethylene and Fruit Ripening 2007
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Ripening in the Tomato Green-ripe Mutant is Inhibited by Ectopic Expression of a Protein that Disrupts Ethylene Signaling 2006
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Role of Beta-Oxidation in Jasmonate Biosynthesis and Systemic Wound Signaling in Tomato 2005
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Manipulation of Light Signal Transduction as a Means of Modifying Fruit Nutritional Quality in Tomato 2004
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Suppression of Arbuscule Degeneration in Medicago truncatula phosphate transporter4 Mutants Is Dependent on the Ammonium Transporter 2 Family Protein AMT2;3 2015
Full text...Breuillin-Sessoms, F., Floss, D.S., Gomez, K.S., Pumplin, N., Ding, Y., Levesque-Tremblay, V., Noar, R.D., Daniels, D.A., Bravo, A., Eaglesham, J.B., Benedito, V.A., Udvardi, M.K., and Harrison, M.J.The Plant Cell, tpc. 114, 131144 -
A set of fluorescent protein-based markers expressed from constitutive and arbuscular mycorrhiza-inducible promoters to label organelles, membranes and cytoskeletal elements in Medicago truncatula. Plant J. ;80(6):1151-63. doi: 10.1111/tpj.12706 2014
Full text...Ivanov S, Harrison MJ.Plant J. 80(6):1151-63, doi: 10.1111/tpj.12706 -
DELLA proteins regulate arbuscule formation in arbuscular mycorrhizal symbiosis 2013
Full text...Floss, D.S., Levy, J.G., Levesque-Tremblay, V., Pumplin, N., and Harrison, M.J.P. Natl. Acad. Sci., U S A 110, E5025-5034 -
Gene silencing in Medicago truncatula roots using RNAi. Methods in Molecular Biology (Clifton, N.J.), 1069, 163-177 2013
Full text...Floss, D.S., Schmitz, A.M., Starker, C.G., Gantt, J.S., and Harrison, M.J.Methods in Molecular Biology (Clifton, N.J.) 1069, 163-177 -
Using membrane transporters to improve crops for sustainable food production 2013
Full text...Schroeder, J.I., Delhaize, E., Frommer, W.B., Guerinot, M.L., Harrison, M.J., Herrera-Estrella, L., Horie, T., Kochian, L.V., Munns, R., Nishizawa, N.K., Tsay, Y.F., and Sanders, D .Nature 497, 60-66 -
Spatio-Temporal Expression Patterns of Arabidopsis thaliana and Medicago truncatula Defensin-Like Genes 2013
Full text...Tesfaye, M., Silverstein, K.A.T., Nallu, S., Wang, L., Botanga, C.J., Gomez, S.K., Costa, L.M., Harrison, M.J., Samac, D.A., Glazebrook, J., Katagiri, F., Gutierrez-Marcos, J.F., and VandenBosch, K.A.PLoS ONE 8, e58992 -
The half-size ABC transporters STR1 and STR2 are indispensable for mycorrhizal arbuscule formation in rice 2012
Full text...Gutjahr, C., Radovanovic, D., Geoffroy, J., Zhang, Q., Siegler, H., Chiapello, M., Casieri, L., An, K., An, G., Guiderdoni, E., Kumar, C.S., Sundaresan, V., Harrison, M.J., and Paszkowski, U.The Plant Journal , 906-920, 906-920 -
Cellular programs for arbuscular mycorrhizal symbiosis 2012
Full text...Harrison, M.J.Curr. Opin. Plant Biol. 15, 691-698 -
Diversity of morphology and function in arbuscular mycorrhizal symbioses in Brachypodium distachyon 2012
Full text...Hong , J.J., Park, Y.S., Bravo, A., Bhattarai, K.K., Daniels, D.A., and Harrison, M.J.Planta 236, 851-865 -
Transgenic expression of phytase and acid phosphatase genes in alfalfa (Medicago sativa) leads to improved phosphate uptake in natural soils 2012
Full text...Ma, X.F., Tudor, S., Butler, T., Ge, Y.X., Xi, Y.J., Bouton, J., Harrison, M., and Wang, Z.Y.Molecular Breeding 30, 377-391 -
Polar localization of a symbiosis-specific phosphate transporter is mediated by a transient reorientation of secretion 2012
Full text...Pumplin, N., Zhang, X., Noar, R.D., and Harrison, M.J.P. Natl. Acad. Sci. U S A 109, E665-672 -
Arsenate induces the expression of fungal genes involved in As transport in arbuscular mycorrhiza. Fungal Biol., 115, 1197-1209 2011
Full text...Gonzalez-Chavez, M.C., P., O.-L.M., Carrillo-Gonzalez, R., Lopez-Meyer, M., Xoconostle-Cazares, B., Gomez, S.K., Harrison, M.J., Figueroa-Lopez, A.M., and Maldonado-Mendoza, I.E.Fungal Biol. 115, 1197-1209 -
3D imaging and mechanical modeling of helical buckling in Medicago truncatula plant roots 2012
Full text...Silverberg, J.L., Noar, R.D., Packer, M.S., Harrison, M.J., Henley, C.L., Cohen, I., and Gerbode, S.J.P. Natl. Acad. Sci. U S A 109, 16794-16799 -
Medicago truncatula mtpt4 mutants reveal a role for nitrogen in the regulation of arbuscule degeneration in arbuscular mycorrhizal symbiosis 2011
Full text...Javot, H., Penmetsa, R.V., Breuillin, F., Bhattarai, K.K., Noar, R.D., Gomez, S.K., Zhang, Q., Cook, D.R., and Harrison, M.J.Plant J 68, 954-965 -
Phosphate transporters in arbuscular mycorrhizal symbiosis. In Arbuscular Mycorrhizas: Physiology and Function 2010
Full text...Harrison, M.J., Pumplin, N., Breuillin, F.J., Noar, R.D., and Park, H.-J.(Koltai, H. and Kapulnik, Y. eds). 0: New York, Springer -
Genomic inventory and transcriptional analysis of Medicago truncatula transporters 2010
Full text...Benedito, V.A., Li, H.Q., Dai, X.B., Wandrey, M., He, J., Kaundal, R., Torres-Jerez, I., Gomez, S.K., Harrison, M.J., Tang, Y.H., Zhao, P.X., and Udvardi, M.K.Plant Physiology 152, 1716-1730 -
Medicago truncatula Vapyrin is a novel protein required for arbuscular mycorrhizal symbiosis 2010
Full text...Pumplin, N., Mondo, S.J., Topp, S., Starker, C.G., Gantt, J.S. and Harrison, M.J.Plant J. 61, 482-494 -
Genetic variation for root architecture, nutrient uptake and mycorrhizal colonisation in Medicago truncatula accessions 2010
Full text...Schultz, C.J., Kochian, L.V., and Harrison, M.J.Plant and Soil 336, 113-128 -
Two Medicago truncatula half-ABC transporters are essential for arbuscule development in arbuscular mycorrhizal symbiosis 2010
Full text...Zhang, Q., Blaylock, L.A., and Harrison, M.J.Plant Cell 22, 1483-1497 -
Live-cell imaging reveals periarbuscular membrane domains and organelle location in Medicago truncatula roots during arbuscular mycorrhizal symbiosis 2009
Full text...Pumplin, N., and Harrison, M.J.Plant Physiology 151, 809-81 -
Reprogramming plant cells for endosymbiosis 2009
Full text...Oldroyd, G.E.D., Harrison, M.J., and Paszkowski, U.Science , 753-754, 753-754 -
Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis 2009
Full text...Gomez, S.K., Javot, H., Deewatthanawong, P., Torres-Jerez, I., Tang, Y., Blancaflor, E.B., Udvardi, M.K., and Harrison, M.J.BMC Plant Biol. 9, 10 -
Laser microdissection and its application to analyze gene expression in arbuscular mycorrhizal symbiosis 2009
Full text...Gomez, S.K., and Harrison, M.J.Pest Management Science 65, 504-511 -
Novel plant and fungal AGP-like proteins in the Medicago truncatula-Glomus intraradices arbuscular mycorrhizal symbiosis 2008
Full text...Schultz, C.J., and Harrison, M.J.Mycorrhiza 18, 403-412 -
The Medicago truncatula ortholog of Arabidopsis EIN2, sickle, is a negative regulator of symbiotic and pathogenic microbial associations 2008
Full text...Penmetsa, R.V., Uribe, P., Anderson, J., Lichtenzveig, J., Gish, J.C., Nam, Y.W., Engstrom, E., Xu, K., Sckisel, G., Pereira, M., Baek, J.M., Lopez-Meyer, M., Long, S.R., Harrison, M.J., Singh, K.B., Kiss, G.B., and Cook, D.R.Plant J. 55, 580-595 -
Closely related members of the Medicago truncatula PHT1 phosphate transporter gene family encode phosphate transporters with distinct biochemical activities 2008
Full text...Liu, J.Y., Versaw, W.K., Pumplin, N., Gomez, S.K., Blaylock, L.A., and Harrison, M.J.Journal of Biological Chemistry 283, 24673-24681 -
A Medicago truncatula phosphate transporter indispensable for the arbuscular mycorrhizal symbiosis 2007
Full text...Javot, H., Penmetsa, R.V., Terzaghi, N., Cook, D.R., and Harrison, M.J.P. Natl. Acad. Sci. U S A 104, 1720-1725 -
Signaling in the Arbuscular Mycorrhizal Symbiosis 2005
Full text...Harrison, M.J.Annual Review of Microbiology 59, 19-42 -
Transcript Profiling Coupled with Spatial Expression Analyses Reveals Genes Involved in Distinct Developmental Stages of an Arbuscular Mycorrhizal Symbiosis 2003
Full text...Liu, J. Y., Blaylock, L.A., Endre, G., Cho, J., Town, C.D., VandenBosch, K.A., and Harrison, M.J.Plant Cell 15, 2106-2123 -
A phosphate transporter from Medicago truncatula involved in the acquisition of phosphate released by arbuscular mycorrhizal fungi 2002
Full text...Harrison, M. J., Dewbre, G.R., and Liu, J.Plant Cell 14, 2413-2429 -
A chloroplast phosphate transporter, PHT2;1, influences allocation of phosphate within the plant and phosphate-starvation responses 2002
Full text...Versaw, W.K., and Harrison, M.J.Plant Cell 14, 1751-1766
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The Potato leafroll virus structural proteins manipulate overlapping, yet distinct protein interaction networks during infection 2015
Full text...DeBlasio, S.L., Johnson, R., Sweeney, M.M., Karasev, A., Gray, S.A., MacCoss, M.J., and Cilia, M.Proteomics DOI: 10.1002, pmic.201400594 -
Is there a role for symbiotic bacteria in plant virus transmission by insects? 2015
Full text...Pinheiro, P., Kliot, A., Ghanim, M., and Cilia, M.Current Opinion in Insect Science 8, 1–10 -
Insights into the polerovirus-plant interactome revealed by co-immunoprecipitation and mass spectrometry 2014
Full text...DeBlasio, S.L., Johnson, R., Mahoney, J., Karasev, A., Gray, S., MacCoss, M.J., and Cilia, M.Mol. Plant Microbe Interact 0:ja -
Circulative, “Nonpropagative” Virus Transmission: An orchestra of virus, insect and plant derived instruments 2014
Full text...Gray, S.M., Cilia, M., and Ghanim, M.Adv. Virus Res. 89, 141-199 -
Infection of the whitefly Bemisia tabaci with Rickettsia spp. alters its interactions with Tomato yellow leaf curl virus 2014
Full text...Kliot, A., Cilia, M., Corso, T., Czosnek, H., and Ghanim, M.J. Virol. 88(10), 5652-5660 -
Evidence for the biochemical basis of host virulence in the greenbug, Schizaphis graminum (Homoptera: Aphididae) 2014
Full text...Pinheiro, P., Bereman, M.S., Burd, J., Pals, M., Armstrong, S., Howe, K.J., Thannhauser, T.W., MacCoss, M.J., Gray, S.M. and Cilia, M.J. Proteome Res. 13(4), 2094-2108 -
Genomic and proteomic analysis of Schizaphis graminum reveals cyclophilin proteins are involved in the transmission of Cereal yellow dwarf virus 2013
Full text...Tamborindeguy, C., Bereman, M.S., DeBlasio, S., Igwe, D., Smith, D.M., White, F., MacCoss, M.J., Gray, S.M., and Cilia, M.PLoS ONE 8(8), e71620 -
Discovery and targeted LC-MS/MS of purified polerovirus reveals differences in the virus-host interactome associated with altered aphid transmission 2012
Full text...Cilia, M., Peter, K., Bereman, M., Howe, K., Fish, T., Smith, D., Gildow, F., MacCoss, M., Thannhauser, T., and Gray, S.M.PLoS ONE 7(10), e48177 -
Tangible benefits of the pea aphid genome sequencing and annotation for aphid proteomics: enhancements in protein identification and data validation for homology-based proteomics.. J. Insect Physiol., 57, 179-190 2011
Full text...Cilia, M., Tamborindeguy, C., Rolland, M., Howe, K., Thannhauser, T., and Gray, S.J. Insect Physiol. 57, 179-190 -
Genetics Coupled to Quantitative Intact Proteomics Links Heritable Aphid and Endosymbiont Protein Expression to Circulative Polerovirus Transmission. J. Virol., 85, 2148-2166. [featured on issue cover] 2010
Full text...Cilia, M., Tamborindeguy, C., Fish, T., Howe, K., Thannhauser, T., and Gray, S.J. Virol. 85, 2148-2166 [featured on issue cover] -
Cross-linking measurements of the Potato leafroll virus reveal protein interaction topologies required for virion stability, aphid transmission, and virus-plant interactions. J. Proteome Res., 11, 2968-2981. *Co-senior authors. 2012
Full text...Chavez, J.D.*, Cilia, M.*, Weisbrod, C.R., Ju, H.J., Eng, J.K., Gray, S.M., and Bruce, J.E.J. Proteome Res. 11, 2968-2981. *Co-senior authors. -
A comparison of protein extraction methods suitable for gel-based proteomic studies of aphid proteins. J. Biomol. Tech., 20, 201-215. 2009
Full text...Cilia, M., Fish, T., Yang, X., McLaughlin, M., Thannhauser, T.W., and Gray, S.J. Biomol. Tech. 20, 201-215 -
Homopteran vector biomarkers for circulative plant virus transmission are expressed in multiple aphid species and the whitefly, Bemisia tabaci 2012
Full text...Cilia, M., Bereman, M., Fish, T., MacCoss, M., and Gray, S.Journal of Integrative Agricultural Special Issue: The whitefly Bemisia tabaci species complex and begomoviruses, 11(2), 249-262 -
Control of Arabidopsis meristem development by thioredoxin-dependent regulation of intercellular transport 2009
Full text...Benitez-Alfonso, Y., Cilia, M., San Roman, A., Thomas, C., Maule, A., Hearn, S., and Jackson, D.P. Natl. Acad. Sci. USA 106, 3615-20 -
Towards sustaining women through critical transition points in scientific careers: a workshop summary 2009
Full text...Cilia, M.J. Biomol. Tech. 19, 353-355 -
Plasmodesmata form and function 2004
Full text...Cilia, M., and Jackson, D.Curr. Opin. Cell Biol. 16, 500-506 -
Plasmodesmata 2001: On safari through the symplast 2002
Full text...Cilia, M., Cantrill, L., and van Bel, A.The Plant Cell 14, 7-10 -
Intercellular trafficking of a KNOTTED1 green fluorescent protein fusion in the leaf and shoot meristem of Arabidopsis. P. Natl. Acad. Sci. USA, 99, 4103-4108 2002
Full text...Kim, J.Y., Yuan, Z., Cilia, M., Khalfan-Jagani, Z., and Jackson, D.P. Natl. Acad. Sci. USA 99, 4103-4108 -
Biomarker discovery from the top down: protein biomarkers for efficient virus transmission by insects (Homoptera: Aphididae) discovered by coupling genetics and 2-D DIGE 2011
Full text...Cilia, M., Howe, K., Fish, T., Smith, D., Mahoney, J., Tamborindeguy, C., Burd, J., Thannhauser, T., and S. Gray.Proteomics 11, 2440-2458 -
Evidence for lysine acetylation in the coat protein of a Polerovirus 2014
Full text...Cilia, M., Johnson, R., Sweeney, M., MacCoss, M.J., and Gray S.M.J. Gen. Virol. vir.0.066514-0
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Tomato receptor FLAGELLIN-SENSING 3 activates plant immunity. Submitted. 2015
Hind SR, Strickler SR, Boyle PC, Bao Z, O’Doherty IM, Baccile JA, Dunham DM, Viox EG, Clarke CR, Vinatzer BA, Schroeder FC and Martin GB.Submitted -
Natural variation for responsiveness to flg22, flgII-28, and csp22 and Pseudomonas syringae pv. tomato in heirloom tomatoes 2014
Full text...Veluchamy S, Hind SR, Dunham DM, Martin GB and Panthee DR.PLoS One 9(9), e106119 -
Allelic variation in two distinct Pseudomonas syringae flagellin epitopes modulates the strength of plant immune responses but not bacterial motility 2013
Full text...Clarke CR, Chinchilla D, Hind SR, Taguchi F, Miki R, Ichinose Y, Martin GB, Leman S, Felix G and Vinatzer BA.New Phytologist 200(3), 847-860 -
The COP9 signalosome controls jasmonic acid synthesis and plant responses to herbivory and pathogens 2011
Full text...Hind SR, Pulliam S, Veronese P, Shantharaj D, Nazir A, Jacobs N, and Stratmann JW.The Plant Journal 65(3), 480-491 -
Wounding systemically activates a mitogen-activated protein kinase in forage and turf grasses 2011
Full text...Dombrowski JE, Hind SR, Martin RC, and Stratmann JW.Plant Science 180(5), 686-693 -
Gene silencing goes viral and uncovers the private life of plants 2011
Full text...Stratmann JW and Hind SR.Entomologia Experimentalis et Applicata 140, 91-102 -
Tissue-type specific systemin perception and the elusive systemin receptor 2010
Full text...Hind S, Malinowski R, Yalamanchili R, and Stratmann JW.Plant Signaling and Behavior 5(1), 42-44 -
Systemin and jasmonic acid regulate constitutive and herbivore-induced systemic volatile emissions in tomato, Solanum lycopersicum 2010
Full text...Degenhardt DC, Hind SR, Stratmann JW, and Lincoln DE.Phytochemistry 71(17-18), 2024-2037
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The rice tyrosine aminomutase TAM1 is required for beta-tyrosine biosynthesis. Plant Cell, 27, 1265-1278 2015
Full text...Yan J., Aboshi T., Teraishi M., Strickler S.R., Spindel J.E., Tung C.W., Takata R., Matsumoto F., Maesaka Y., McCouch S.R., Okumoto Y., Mori N., and Jander G.Plant Cell 27, 1265-1278 -
Genetic mapping shows intraspecific variation and transgressive segregation for caterpillar-induced aphid resistance in maize. Molecular Ecology 10.1111/mec.13418 2015
Full text...Tzin, V., Lindsay, P. L., Christensen, S. A., Meihls, L. N., Blue, L. B., Jander, G.Molecular Ecology 10.1111/mec.13418 -
Dynamic Maize Responses to Aphid Feeding Are Revealed by a Time Series of Transcriptomic and Metabolomic Assays. Plant Physiology 10.1104/pp.15.01039 2015
Full text...Tzin, V., Fernandez-Pozo, N., Richter, A., Schmelz, E. A., Schoettner, M., Schafer, M., Ahern, K. R., Meihls, L. N., Kaur, H., Huffaker, A., Mori, N., Degenhardt, J., Mueller, L. A., Jander, G.Plant Physiology 10.1104, pp.15.01039 -
The NIa-Pro protein of Turnip mosaic virus improves growth and reproduction of the aphid vector, Myzus persicae (green peach aphid) 2014
Full text...Casteel, C. L., Yang, C. L., Nanduri, A. C., De Jong, H. N., Whitham, S. A., Jander, G.Plant Journal 10.1111, tpj.12417 -
Natural variation in maize aphid resistance is associated with 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one glucoside methyltransferase activity 2013
Full text...Meihls, L.N., Handrick, V., Glauser, G., Barbier, H., Kaur, H., Haribal, M.M., Lipka, A.E., Gershenzon, J., Buckler, E.S., Erb, M., Kollner, T.G., and Jander, G.Plant Cell 25, 2341-2355 -
Suppression of Plant Defenses by a Myzus persicae (Green Peach Aphid) Salivary Effector Protein 2014
Full text...Elzinga, D. A., De Vos, M., Jander, G.Molecular Plant-Microbe Interactions 10.1094, MPMI-01-14-0018-R -
Accumulation of 5-hydroxynorvaline in maize (Zea mays) leaves is induced by insect feeding and abiotic stress 2015
Full text...Yan, J., Lipka, A. E., Schmelz, E. A., Buckler, E. S., Jander, G.Journal of Experimental Botany 10.1093/jxb/eru385 -
Additive effects of two quantitative trait loci that confer Rhopalosiphum maidis (corn leaf aphid) resistance in maize inbred line Mo17 2015
Full text...Betsiashvili, M., Ahern, K. R., Jander, G.Journal of Experimental Botany 10.1093/jxb/eru379 -
The raison d’etre of chemical ecology 2015
Full text...Raguso, R. A., Agrawal, A. A., Douglas, A. E., Jander, G., Kessler, A., Poveda, K., Thaler, J. S.Ecology 10.1890, 14-1474.1 -
Adaptation to nicotine in the facultative tobacco-feeding hemipteran Bemisia tabaci 2014
Full text...Kliot, A., Kontsedalov, S., Ramsey, J. S., Jander, G., Ghanim, A.Pest Management Science 10.1002, ps.3739 -
Matching the supply of bacterial nutrients to the nutritional demand of the animal host 2014
Full text...Russell, C.W., Poliakov, A., Haribal, M., Jander, G., van Wijk, K. J., Douglas, A. E.Proceedings of the Royal Society B-Biological Sciences 10.1098, rspb.2014.1163 -
The catabolic enzyme methionine gamma-lyase limits methionine accumulation in potato tubers 2014
Full text...Huang, T. F., Joshi, V., Jander, G.Plant Biotechnology Journal 10.1111, pbi.12191 -
Adaptation to Nicotine Feeding in Myzus persicae 2014
Full text...Ramsey, J. S., Elzinga, D. A., Sarkar, P., Xin, Y. R., Ghanim, M., Jander, G.J. Chem. Ecol. 40, 869-877 -
The NIa-Pro protein of turnip mosaic virus Improves growth and reproduction of the aphid vector, Myzus persicae (green peach aphid) 2014
Full text...Casteel, C.L., Yang, C., Nanduri, A.C., De Jong, H.N., Whitham, S.A., and Jander, G.Plant Journal 10.1111, tpj.12417 -
Alteration of Plant Primary Metabolism in Response to Insect Herbivory 2015
Full text...Zhou S.Q., Lou, Y.R., Tzin, V., Jander, G.Plant Physiology 10.1104, pp.15.01405 -
Disrupting Buchnera aphidicola, the endosymbiotic bacteria of Myzus persicae, delays host plant acceptance 2015
Full text...Machado-Assefh, C. R., Lopez-Isasmendi, G., Tjallingii, W.F., Jander, G., Alvarez, A. E.Arthropod-Plant Interactions 0.1007/s11829-015-9394-8 -
Maize death acids, 9-lipoxygenase-derived cyclopente(a)nones, display activity as cytotoxic phytoalexins and transcriptional mediators 2015
Full text...Christensen, S. A., Huffaker, A., Kaplan, F., Sims, J., Ziemann, S., Doehlemann, G., Ji, L. X., Schmitz, R. J., Kolomiets, M. V., Alborn, H. T., Mori, N, Jander, G., Ni, X. Z., Sartor, R. C., Byers, S., Abdo, Z., Schmelz E.A.Proceedings of the National Academy of Sciences of the United States of America 10.1073, pnas.1511131112 -
Disruption of Ethylene Responses by Turnip mosaic virus Mediates Suppression of Plant Defense against the Green Peach Aphid Vector 2015
Full text...Casteel C.L., De Alwis, M., Bak, A., Dong, H. L., Witham, S.A., Jander, G.Plant Physiology 10.1104/pp.15.00332 Plant Physiology 10.1104/pp.15.00332, Plant Physiology 10.1104/pp.15.00332 -
RNA interference against gut osmoregulatory genes in phloem-feeding insects 2015
Full text...Tzin, V., Yang, X. V., Jing, X.F., Zhang, K., Jander, G., Douglas, A. E.Journal of Insect Physiology 10.1016, j.jinsphys.2015.06.006 -
The glucosinolate breakdown product indole-3-carbinol acts as an auxin antagonist in roots of Arabidopsis thaliana 2015
Full text...Katz, E., Nisani, S., Yadav, B. S., Woldemariam, M. G., Shai, B., Obolski, U., Ehrlich, M., Shani, E., Jander, G., Chamovitz, B. A.Plant Journal /tpj.12824, tpj.12824 -
Abscisic acid deficiency increases defence responses against Myzus persicae in Arabidopsis 2016
Full text...Hillwig, M.S., Chiozza, M., Casteel, C.L., Lau, S.T.,Hohenstein, J., Hernandez, E., Jander, G., MacIntosh, G.C.Molecular Plant Pathology 10.1111, mpp.12274 -
Stable isotope studies reveal pathways for the incorporation of non-essential amino acids in Acyrthosiphon pisum (pea aphids) 2015
Full text...Haribal, M., Jander, G.Journal Of Experimental Biology 10.1242, jeb.129189 -
New synthesis: investigating mutualisms in virus-vector interactions 2013
Full text...Casteel, C.L., and Jander, G.Journal of Chemical Ecology 39, 809 -
Introducing the USA Plant, Algae and Microbial Metabolomics Research Coordination Network (PAMM-NET) 2015
Full text...Sumner, L.W., Styczynski, M., McLean, J., Fiehn, O., Jander, G., Liao, J., Sumner, S., Britz-McKibbin, P., Welti, R., Jones, A.D., Dorrestein, P.C., Bearden, D., and Kaddurah-Daouk, R.Metabolomics 11, 3–5 -
Additive effects of two quantitative trait loci that confer Rhopalosiphum maidis (corn leaf aphid) resistance in maize inbred line Mo17 2014
Full text...Betsiashvili, M., Ahern, K.R., and Jander, G.J. Exp. Bot., 66(2), 571-578 -
Revisiting plant-herbivore co-evolution in the molecular biology era 2014
Full text...Jander, G.Annual Plant Reviews 47, 361-384 -
Adaptation to nicotine feeding in Myzus persicae. Journal of Chemical Ecology 2014
Full text...Ramsey, J.S., Elzinga, D.A., Xin, Y.-R., Sarkar, P., and Jander, G.in press -
Suppression of plant defenses by a Myzus persicae (green peach aphid) salivary effector protein 2014
Full text...Elzinga, D.A., De Vos, M., and Jander, G.Mol. Plant Microbe In. 27, 747–756 -
The catabolic enzyme methionine gamma-lyase limits methionine accumulation in potato tubers 2014
Full text...Huang, T., Joshi, V., and Jander, G.Plant Biotechnology Journal 12(7), 883–893 -
Adaptation to nicotine in the facultative tobacco-feeding hemipteran Bemisia tabaci 2014
Full text...Kliot, A., Kontsedalov, S., Ramsey, J.S., Jander, G., and Ghanim, M.Pest Manag. Sci. 70, 1595-1603 -
The role of protein effectors in plant-aphid interactions 2013
Full text...Elzinga, D.A., and Jander, G.Curr. Opin. Plant Biol. 16, 451-456 -
Comparative analysis of genome sequences from four strains of the Buchnera aphidicola Mp endosymbion of the green peach aphid, Myzus persicae 2013
Full text...Jiang, Z.J., Jones, D.H., Khuri, S., Tsinoremas, N.F., Wyss, T., Jander, G., and Wilson, A.C.C.BMC Genomics 14, 917 -
Near-isogenic lines for measuring phenotypic effects of DIMBOA-Glc methyltransferase activity in maize 2013
Full text...Mijares, V., Meihls, L., Jander, G., and Tzin, V.Plant Signaling & Behavior 8, e26779 -
Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress 2010
Full text...Joshi, V., Joung, J.G., Fei, Z. and Jander, G.Amino Acids 39, 933-947 -
Transgenerational defense induction and epigenetic inheritance in plants 2012
Full text...Holeski, L.M., Jander, G., and Agrawal, A.A.Trends in Ecology & Evolution 27, 618-626 -
meta-Tyrosine in Festuca rubra ssp. commutata (Chewings fescue) is synthesized by hydroxylation of phenylalanine 2012
Full text...Huang, T., Rehak, L., and Jander, G.Phytochemistry 75, 60-66 -
Timely plant defenses protect against caterpillar herbivory 2012
Full text...Jander, G.P. Natl. Acad. Sci. U S A 109, 4343-4344 -
Natural variation in maize defense against insect herbivores 2012
Full text...Meihls, L.N., Kaur, H., and Jander, G.Cold Spring Harb. Symp. Quant. Biol. 77, 269-283 -
Engineering of benzylglucosinolate in tobacco provides proof-of-concept for dead-end trap crops genetically modified to attract Plutella xylostella (diamondback moth) 2012
Full text...Moldrup, M.E., Geu-Flores, F., de Vos, M., Olsen, C.E., Sun, J., Jander, G., and Halkier, B.A.Plant Biotechnology Journal 10, 435-442 -
Herbivory in the previous generation primes plants for enhanced insect resistance 2012
Full text...Rasmann, S., De Vos, M., Casteel, C.L., Tian, D.L., Halitschke, R., Sun, J.Y., Agrawal, A.A., Felton, G.W., and Jander, G.Plant Physiology 158, 854-863 -
Insecticide resistance mechanisms in the green peach aphid Myzus persicae (Hemiptera: Aphididae) I: a transcriptomic survey 2012
Full text...Silva, A.X., Jander, G., Samaniego, H., Ramsey, J.S., and Figueroa, C.C.PLoS ONE 7, e36366 -
Non-protein amino acids in plant defense against insect herbivores: representative cases and opportunities for further functional analysis 2011
Full text...Huang, T., Jander, G., and de Vos, M.Phytochemistry 72, 1531-1537 -
New synthesis–plant defense signaling: new opportunities for studying chemical diversity 2011
Full text...Jander, G., and Clay, N.J. Chem. Ecol. 37, 429 -
Biosynthesis and defensive function of Ndelta-acetylornithine, a jasmonate-induced Arabidopsis metabolite 2011
Full text...Adio, A.M., Casteel, C.L., De Vos, M., Kim, J.H., Joshi, V., Li, B., Juery, C., Daron, J., Kliebenstein, D.J., and Jander, G.Plant Cell 23, 3303-3318 -
Differential effects of indole and aliphatic glucosinolates on lepidopteran herbivores 2010
Full text...Muller, R., de Vos, M., Sun, J.Y., Sonderby, I.E., Halkier, B.A., Wittstock, U., and Jander, G.Journal of Chemical Ecology 36, 905-913 -
Antibiosis against the green peach aphid requires the Arabidopsis thaliana MYZUS PERSICAE-INDUCED LIPASE1 gene 2010
Full text...Louis, J., Lorenc-Kukula, K., Singh, V., Reese, J., Jander, G., and Shah, J.Plant Journal 64, 800-811 -
Pleiotropic physiological consequences of feedback-insensitive phenylalanine biosynthesis in Arabidopsis thaliana. 2010
Full text...Huang, T., Tohge, T., Lytovchenko, A., Fernie, A.R., and Jander, G.Plant J. 63, 823-835 -
Recent progress in deciphering the biosynthesis of aspartate-derived amino acids in plants 2010
Full text...Jander, G., and Joshi, V.Mol. Plant 3, 54-65 -
Volatile communication in plant-aphid interactions 2010
Full text...de Vos, M., and Jander, G.Curr. Opin. Plant Biol. 13, 366-371 -
Alarm pheromone habituation in Myzus persicae has fitness consequences and causes extensive gene expression changes 2010
Full text...de Vos, M., Cheng, W.Y., Summers, H.E., Raguso, R.A., and Jander, G.P. Natl. Acad. Sci. U S A 107, 14673-14678 -
Genomic evidence for complementary purine metabolism in the pea aphid, Acyrthosiphon pisum, and its symbiotic bacterium Buchnera aphidicola 2010
Full text...Ramsey, J.S., MacDonald, S.J., Jander, G., Nakabachi, A., Thomas, G.H., and Douglas, A.E.Insect Mol. Biol. 19, Suppl 2, 241-248 -
Comparative analysis of detoxification enzymes in Acyrthosiphon pisum and Myzus persicae 2010
Full text...Ramsey, J.S., Rider, D.S., Walsh, T.K., De Vos, M., Gordon, K.H., Ponnala, L., Macmil, S.L., Roe, B.A., and Jander, G.Insect Mol. Biol. 19, Suppl 2, 155-164 -
Non-volatile intact indole glucosinolates are host recognition cues for ovipositing Plutella xylostella 2010
Full text...Sun, J.Y., Sonderby, I.E., Halkier, B.A., Jander, G., and de Vos, M.J. Chem. Ecol. 35(12), 1427-1436 -
Genome-enabled research on the ecology of plant-insect interactions 2010
Full text...Whiteman, N.K., and Jander, G.Plant Physiology 154, 475-478 -
Genomic insight into the amino acid relations of the pea aphid, Acyrthosiphon pisum, with its symbiotic bacterium Buchnera aphidicola 2010
Full text...Wilson, A.C.C., Ashton, P.D., Calevro, F., Charles, H., Colella, S., Febvay, G., Jander, G., Kushlan, P.F., Macdonald, S.J., Schwartz, J.F., Thomas, G.H., and Douglas, A.E.Insect Mol. Biol. 19, 249-258 -
Glucosinolate metabolites required for an Arabidopsis innate immune response 2009
Full text...Clay, N.K., Adio, A.M., Denoux, C., Jander, G., and Ausubel, F.M.Science 323, 95-101 -
Arabidopsis methionine gamma-lyase is regulated according to isoleucine biosynthesis needs but plays a subordinate role to threonine deaminase 2009
Full text...Joshi, V., and Jander, G.Physiology 151, 367-378 -
Myzus persicae (green peach aphid) salivary components induce defence responses in Arabidopsis thaliana 2009
Full text...de Vos, M., and Jander, G., 32, 1548-1560 32, 1548-1560 -
Indole glucosinolate breakdown and its biological effects 2009
Full text...Agerbirk, N., de Vos, M., Kim, J.H., and Jander, G.Phytochem. Rev. 8, 101-120 -
Reduced activity of Arabidopsis thaliana HMT2, a methionine biosynthetic enzyme, increases seed methionine content 2008
Full text...Lee, M.S., Huang, T.F., Toro-Ramos, T., Fraga, M., Last, R.L., and Jander, G.Plant Journal 54, 310-320 -
Plant immunity to insect herbivores 2008
Full text...Howe, G.A., and Jander, G.Annual Review of Plant Biology 59, 41-66 -
Choice and no-choice assays for testing the resistance of A. thaliana to chewing insects. 2008
Full text...de Vos, M., and Jander, G.JoVE 15 -
Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design 2007
Full text...Ramsey, J.S., Wilson, A.C.C., de Vos, M., Sun, Q., Tamborindeguy, C., Winfield, A., Malloch, G., Smith, D.M., Fenton, B., Gray, S.M., and Jander, G.BMC Genomics 8, 423 -
Indole-3-acetonitrile production from indole glucosinolates deters oviposition by Pieris rapae. 2008
Full text...de Vos, M., Kriksunov, K.L., and Jander, G.Plant Physiology 146, 916-926 -
Biochemistry and molecular biology of Arabidopsis-aphid interactions 2007
Full text...de Vos, M., Kim, J.H., and Jander, G.BioEssay 29, 871-883 -
Tandem gene arrays: a challenge for functional genomics 2007
Full text...Jander, G., and Barth, C.Trends in Plant Science 12, 203-210 -
Arabidopsis Myrosinases TGG1 and TGG2 have Redundant Function in Glucosinolate Breakdown and Insect Defense 2006
Full text...Barth, C., Jander, G.Plant J. 46, 549-562 -
Gene Identification and Cloning by Molecular Marker Mapping 2006
Full text...Jander, G.Methods in Molecular Biology 323, 115-126 -
Prevention and control of pests and diseases 2006
Full text...Bush, J., Jander, G., Ausubel, F.M.Methods Mol. Biol. 323, 13-25 -
The TASTY locus on chromosome 1 of Arabidopsis affects feeding of the insect herbivore Trichoplusia ni 2001
Full text...Jander, G., Cui, J., Nhan, B., Pierce, N.E., and Ausubel F.M.Plant Physiology 126, 890-898 -
Ecological role of transgenerational resistance against biotic threats 2012
Full text...Rasmann, S., De Vos, M., and Jander, G.Plant Signaling & Behavior 7, 447-449 -
Grass roots chemistry: meta-tyrosine, an herbicidal non-protein amino acid 2007
Full text...C. Bertin, L. A. Weston, T. Huang, G. Jander, T. Owens, J. Meinwald, and F. C. Schroeder.P. Natl. Acad. Sci. USA 43, 16964-16969
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Multiple targets of salicylic acid and its derivatives in plants and animals 2016
Full text...Klessig, D. F., Tian, M., and Choi H.-W.Immunology (in review) -
Activation of Plant Innate Immunity by Extracellular High Mobility Group Box 3 and Its Inhibition by Salicylic Acid 2016
Full text...Choi, H.W., Manohar, M., Manosalva, P., Tian, M., Moreau, M., and Klessig, D.F.PLOS Pathog. 12, e1005518 -
Newly identified targets of Aspirin and its primary metabolite, salicylic acid 2016
Full text...Klessig, D.F.DNA Cell Biol. 35, 163-166 -
Aspirin’s Active Metabolite Salicylic Acid Targets Human High Mobility Group Box 1 to Modulate Inflammatory Responses 2015
Full text...Choi, H.W., Tian, M., Song, F., Venereau, E., Preti, A., Park, S.W., Hamilton, K., Swapna, G.V.T., Manohar, M., Moreau, M., Agresti, A., Gorzanelli, A., De Marchis, F., Wang, H., Antonyak, M., Micikas, R., Gentile, D.R., Cerione, R.A., Schroeder, F.C., Montelione, G.T., Bianchi, M.E., and Klessig, D.F.Mol. Med. 21, 526-535 -
Human GAPDH is a target of aspirin’s primary metabolite salicylic acid and its derivatives 2015
Full text...Choi, H.W., Tian, M., Manohar, M., Harraz, M.M., Park, S.-W., Schroeder, F.C., Snyder, S.H., and Klessig, D.F.PLOS ONE 10, e0143447 -
Identification of multiple salicylic acid-binding proteins using two high throughput screens. Front 2015
Full text...Manohar, M., Tian, M., Moreau, M., Park, S-W., Choi, H.W., Fei, Z., Friso, G., Asif, M., Manosalva, P., von Dahl, C.C., Shi, K., Ma, S., Dinesh-Kumar, S.P., O'Doherty, I., Schroeder, F.C., van Wijk, K.J., and Klessig, D.F.Plant Sci. 5, 777 -
Salicylic acid inhibits the replication of Tomato Bushy Stunt Virus by directly targeting a host component in the replication complex. 2015
Full text...Tian, M., Sasvani, Z., Gonzalez, P.A., Friso, G., Rowland, E., Liu, X-M., van Wijk, K.J., Nagy, P.D., and Klessig, D.Molecular Plant-Microbe Interactions -
Conserved nematode signaling molecules elicit plant defenses and pathogen resistance 2015
Full text...Manosalva, P., Manohar, M., von Reuss, S.H., Chen, S., Micikas, R.J., Koch, A., Choe, A., Kaplan, F., Xiaohong Wang, X., Kogel, K-H., Sternberg, P.W., Williamson, V. M., Schroeder, F.C., and Klessig, D.F.Nature Comm 6, 7795 -
The GHKL ATPase MORC1 modulates species-specific plant immunity in Solanaceae 2015
Full text...Manosalva, P., Manohar, M., Kogel, K-H., Kang, H-G., and Klessig, D.F.Molecular Plant-Microbe Interactions 28, 927-942 -
The Compromised Recognition of Turnip Crinkle Virus1 Subfamily of Microrchidia ATPases Regulates Disease Resistance in Barley to Biotrophic and Necrotrophic Pathogens 2014
Full text...Langen, G., von Einem, S., Koch, A.,Imani, J., Pai, S.B., Manohar, M., Ehlers, K., Choi, H.W., Claar, M., Schmidt, R., Mang, H-G., Bordiya, Y., Kang, H-G., Klessig, D.F., and Kogel, K-H.Plant Physiology 164(2), 866-878. -
Salicylic acid binding of mitochondrial alpha-ketoglutarate dehydrogenase E2, which interacts with the downstream mitochondrial electron transport chain, plays a crucial role in basal defense against TMV in tomato 2014
Full text...Liao, Y., Tian, M., Zhang, H., Li, X., Xia, X., Zhou, J., Zhou, Y., Yul, J., Shi, K., and Klessig, D.F.New Phytologist doi: 10.1111, nph13137 -
Crystal structure of the Arabidopsis thaliana TOP2 oligopeptidase. Acta. Crystallogr 2014
Full text...Wang, R., Rajagopalan, K., Sadre-Bazzaz, K., Moreau, M., Klessig, D.F., and Tong, L.F. Struct. Biol. Commun. 70, 555 -
SOS – too many signals for systemic acquired resistance? 2012
Full text...Dempsey, D.A., and Klessig, D.F.Trends Plant Sci. 17, 538-545 -
Structure of the Arabidopsis thaliana TOP2 oligopeptidase 2014
Full text...Wang, R., Rajagopalan, K., Sadre-Bazzaz, K., Moreau, M., Klessig, D.F., and Tong, L.Acta Cryst. F70, 555–559 -
CRT1 is a nuclear-translocated MORC endonuclease that participates in multiple levels of plant immunity 2012
Full text...Kang, H.G., Hyong, W.C., von Einem, S., Manosalva, P., Ehlers, K., Liu, P.P., Buxa, S.V., Moreau, M., Mang, H.G., Kachroo, P., Kogel, K.H., and Klessig, D.F.Nature Communications 3, 1297 -
Abscisic acid deficiency antagonizes high-temperature inhibition of disease resistance through enhancing nuclear accumulation of resistance proteins SNC1 and RPS4 in Arabidopsis 2012
Full text...Mang, H.G., Qian, W.Q., Zhu, Y., Qian, J., Kang, H.G., Klessig, D.F., and Hua, J.Plant Cell 24, 1271-1284 -
Salicylic acid binds NPR3 and NPR4 to regulate NPR1-dependent defense responses 2012
Full text...Moreau, M., Tian, M., and Klessig, D.F.Cell Res. 22, 1631-1633 -
The combined use of photoaffinity labeling and surface plasmon resonance-based technology identifies multiple salicylic acid-binding proteins 2012
Full text...Tian, M., von Dahl, C.C., Liu, P.P., Friso, G., van Wijk, K.J., and Klessig, D.F.Plant J. 72, 1027-1038 -
Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation 2012
Full text...Zheng, X.Y., Spivey, N.W., Zeng, W.Q., Liu, P.P., Fu, Z.Q., Klessig, D.F., He, S.Y., and Dong, X.N.Cell Host Microbe 11, 587-596 -
The extent to which methyl salicylate is required for signaling systemic acquired resistance is dependent on exposure to light after infection. 2011
Full text...Liu, P.P., von Dahl, C.C., and Klessig, D.F.Plant Physiology 157, 2216-2226 -
Interconnection between methyl salicylate and lipid-based long-distance signaling during the development of systemic acquired resistance in Arabidopsis and tobacco 2011
Full text...Liu, P.P., von Dahl, C.C., Park, S.W., and Klessig, D.F.Plant Physiology 155, 1762-1768 -
Salicylic acid biosynthesis and metabolism 2011
Full text...Dempsey, D.A., Vlot, A.C., Wildermuth, M.C., and Klessig, D.F.In The Arabidopsis Book American Society of Plant Biologists e0156 -
NO synthesis and signaling in plants–where do we stand? 2010
Full text...Moreau, M., Lindermayr, C., Durner, J., and Klessig, D.F.Physiol. Plant 138, 372-383 -
The lesion-mimic mutant cpr22 shows alterations in abscisic acid signaling and abscisic acid insensitivity in a salicylic acid-dependent manner 2010
Full text...Mosher, S., Moeder, W., Nishimura, N., Jikumaru, Y., Joo, S.H., Urquhart, W., Klessig, D.F., Kim, S.K., Nambara, E., and Yoshioka, K.Plant Physiology 152, 1901-1913 -
Methyl esterase 1 (StMES1) is required for systemic acquired resistance in potato 2010
Full text...Manosalva, P.M., Park, S.W., Forouhar, F., Tong, L., Fry , W.E., and Klessig, D.F.Mol. Plant Microbe Interact. , 1151-1163., 1151-1163. -
Endosome-associated CRT1 functions early in resistance gene-mediated defense signaling in Arabidopsis and tobacco 2010
Full text...Kang, H.G., Oh, C.S., Sato, M., Katagiri, F., Glazebrook, J., Takahashi, H., Kachroo, P., Martin, G.B., and Klessig, D.F.Plant Cell 22, 918-936 -
Altering expression of benzoic acid/salicylic acid carboxyl methyltransferase 1 compromises systemic acquired resistance and PAMP-triggered immunity in arabidopsis 2010
Full text...Liu, P.P., Yang, Y., Pichersky, E., and Klessig, D.F.Mol. Plant Microbe Interact. 23, 82-90 -
Systemic acquired resistance is induced by R gene-mediated responses independent of cell death. 2010
Full text...Liu, P.P., Bhattacharjee, S., Klessig, D.F., and Moffett, P.Mol. Plant Pathol. 11, 155-160 -
Cryptochrome 2 and phototropin 2 regulate resistance protein-mediated viral defense by negatively regulating an E3 ubiquitin ligase 2010
Full text...Jeong, R.D., Chandra-Shekara, A.C., Barman, S.R., Navarre, D., Klessig, D.F., Kachroo, A., and Kachroo, P.P. Natl. Acad. Sci. U S A 107, 13538-13543 -
Salicylic acid, a multifaceted hormone to combat disease 2009
Full text...Vlot, A.C., Dempsey, D.A., and Klessig, D.F.Annu. Rev. Phytopathol. 47, 177-206 -
Use of a synthetic salicylic acid analog to investigate the roles of methyl salicylate and its esterases in plant disease resistance 2009
Full text...Park, S.W., Liu, P.P., Forouhar, F., Vlot, A.C., Tong, L., Tietjen, K., and Klessig, D.F.Journal of Biological Chemistry 284, 7307-7317 -
Enhanced defense responses in Arabidopsis induced by the cell wall protein fractions from Pythium oligandrum require SGT1, RAR1, NPR1 and JAR1 2009
Full text...Kawamura, Y., Takenaka, S., Hase, S., Kubota, M., Ichinose, Y., Kanayama, Y., Nakaho, K., Klessig, D.F., and Takahashi, H.Plant Cell Physiol. 50, 924-934 -
Identification of likely orthologs of tobacco salicylic acid-binding protein 2 and their role in systemic acquired resistance in Arabidopsis thaliana. 2008
Full text...Vlot, A.C., Liu, P.P., Cameron, R.K., Park, S.W., Yang, Y., Kumar, D., Zhou, F.S., Padukkavidana, T., Gustafsson, C., Pichersky, E., and Klessig, D.F.Plant J. 56, 445-456 -
Systemic acquired resistance: the elusive signal(s) 2008
Full text...Vlot, A.C., Klessig, D.F., and Park, S.W.Curr. Opin. Plant Biol. 11, 436-442 -
The Structure of YqeH: An AtNOS1/AtNOA1 ortholog that couples GTP hydrolysis to molecular recognition 2008
Full text...Sudhamsu, J., Lee, G.I., Klessig, D.F., and Crane, B.R.Journal of Biological Chemistry, 283, 32968-32976 -
High level expression of a virus resistance gene, RCY1, confers extreme resistance to Cucumber mosaic virus in Arabidopsis thaliana 2008
Full text...Sekine, K.T., Kawakami, S., Hase, S., Kubota, M., Ichinose, Y., Shah, J., Kang, H.G., Klessig, D.F., and Takahashi, H.Mol. Plant Microbe Interact. 21, 1398-1407 -
AtNOS/AtNOA1 Is a Functional Arabidopsis thaliana cGTPase and Not a Nitric-oxide Synthase 2008
Full text...Moreau, M., Lee, G.I., Wang, Y., Crane, B.R., and Klessig, D.F.Journal of Biological Chemistry 283, 32957-32967 -
Plant resistance to viruses: Natural resistance associated with dominant genes 2008
Full text...Moffett, P., and Klessig, D.F.In Encyclopedia of Virology (Mahy, B.W.J. and van Regenmortel, M. eds) Oxford 0: Elsevier -
Methyl salicylate is a critical mobile signal for plant systemic acquired resistance 2007
Full text...Park, S.-W., Kaiyomo, E., Kumar, D., Mosher, S.L., and Klessig, D.F.Science 318, 113-116 -
The search for the salicylic acid receptor led to discovery of the SAR signal receptor. 2008
Full text...Kumar, D., and Klessig, D.F.Plant Signal Behav. 3, 691-692 -
CRT1, an Arabidopsis ATPase that interacts with diverse resistance proteins and modulates disease resistance to turnip crinkle virus 2008
Full text...Kang, H.G., Kuhl, J.C., Kachroo, P., and Klessig, D.F.Cell Host & Microbe 3, 48-57 -
HRT-mediated hypersensitive response and resistance to Turnip crinkle virus in Arabidopsis does not require the function of TIP, the presumed guardee protein 2008
Full text...Jeong, R.D., Chandra-Shekara, A.C., Kachroo, A., Klessig, D.F., and Kachroo, P.Mol. Plant Microbe Interact. 21, 1316-1324 -
The involvement of the Arabidopsis CRT1 ATPase family in disease resistance protein-mediated signaling 2008
Full text...Kang, H.G., and Klessig, D.F.Plant Signal Behav. 3, 689-690 -
Inactive methyl indole-3-acetic acid ester can be hydrolyzed and activated by several esterases belonging to the AtMES esterase family of Arabidopsis 2008
Full text...Yang, Y., Xu, R., Ma, C.J., Vlot, A.C., Klessig, D.F., and Pichersky, E.Plant Physiology 147, 1034-1045 -
The Arabidopsis gain-of-function mutant ssi4 requires RAR1 and SGT1b differentially for defense activation and morphological alterations. 2008
Full text...Zhou, F.S., Mosher, S., Tian, M.Y., Sassi, G., Parker, J., and Klessig, D.F.Mol. Plant Microbe Interact. 21, 40-49 -
Validation of RNAi Silencing Specificity Using Synthetic Genes: Salicylic Acid-binding Protein 2 is Required for Innate Immunity in Plants 2006
Full text...Kumar, D., Gustafsson, C., and Klessig, D.F.Plant J. 45, 863-868 -
The Chimeric Arabidopsis CYCLIC NUCLEOTIDE-GATED ION CHANNEL11/12 Activates Multiple Pathogen Resistance Responses 2006
Full text...Yoshioka, K., Moeder, W., Kang, H.-G., Kachroo, P., Masmoudi, K., Berkowitz, G., and Klessig, D.F.Plant Cell 18, 747-763. -
Crystal structure and biochemical studies identify tobacco SABP2 as a methylsalicylate esterase and further implicate it in plant innate immunity 2005
Full text...Forouhar, F., Yang, Y., Kumar, D., Chen, Y., Fridman, E., Park, S.W., Chiang, Y., Acton, T.B., Montelione, G.T., Pichersky, E., Klessig, D.F., and Tong, L.P. Natl. Acad. Sci. U S A 102, 1773-1778 -
Silencing of the Mitogen-activated Protein Kinase MPK6 Compromises Disease Resistance in Arabidopsis 2004
Full text...Menke, F.L.H., van Pelt, J.A., Pieterse, C.M.J., and Klessig, D.F.Plant Cell 16, 897-907 -
Interconnection between methyl salicylate and lipid-based long-distance signaling during systemic acquired resistance in Arabidopsis and tobacco 2001
Full text...Liu, P.-P., von Dahl, C. C., Park, S.-W., and Klessig, D. F.Plant Physiol. 155, 1762-1768 -
Double-Stranded RNA-Binding Protein 4 Is Required for Resistance Signaling against Viral and Bacterial Pathogens 2013
Full text...Zhu, S.F., Jeong, R.D., Lim, G.H., Yu, K.S., Wang, C.X., Chandra-Shekara, A.C., Navarre, D., Klessig, D.F., Kachroo, A., and Kachroo, P.Cell Reports 4, 1168-1184
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Potato tuber herbivory increases resistance to aboveground lepidopteran herbivores 2016
Full text...Kumar, P., Vargas Ortiz, E., Garrido, E., Poveda, K., and Jander, G.Oecologia 182(1), 177-87 -
Detoxification of host plant’s chemical defense rather than its anti-predator co-option drives b-glucosidase-mediated lepidopteran counter adaptation 2015
Full text...Poreddy, S., Mitra, M., Schöttner, M., Chandran, J., Schneider, B., Baldwin, I.T., Kumar, P. and Pandit, S. S.Nature Commun 6:8525, doi: 10.1038/ncomms9525 -
Pyridine-type alkaloid composition affects bacterial community composition of floral nectar 2015
Full text...Aizenberg Gershtein, Y., Izhaki, I., Santhanam, R., Kumar, P., Baldwin, I. T. and Halpern, M.Scientific Reports 5:11536, DOi: 10.1038/srep11536 -
Difference in nicotine metabolism of two herbivores of Nicotiana attenuata renders them differentially susceptible to a common native predator 2014
Full text...Kumar, P., Schoettner, M., Pandit, S. S., and Baldwin, I. T.PLOS One 9 (4), e95982 -
A natural history driven, plant mediated RNAi based study reveals CYP6B46’s role in a nicotine-mediated anti-predator herbivore defense 2013
Full text...Kumar, P., Pandit, S. S., Steppuhn, A., and Baldwin, I. T.Proc Natl Acad Sci USA 111, 1245-1252 -
Tobacco Rattle Virus vector: A rapid and transient means of silencing Manduca sexta genes by plant mediated RNA interference 2012
Full text...Kumar, P., Pandit, S. S., Baldwin, I. T.PLOS One 7 (2), e31347 -
Spatial and temporal expression patterns of diverse Pin-II genes in Capsicum annuum Linn 2009
Full text...Tamhane, V. A., Giri, A. P., Kumar, P., Gupta, V. S.Gene 442:1-2, 88-90
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Hornworts, an overlooked window into carbon-concentrating mechanism 2017
Li, F.-W., J.C. Villarreal, P. SzovenyiTrends in Plant Science 22, 275-277 -
Boechera Microsatellite Database: an online portal for species identification and hybrid relationship resolution 2017
Full text...Li, F.-W., C.A. Rushworth, J.B. Beck, M.D. WindhamDatabase 1, baw169 -
The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2 2017
Rockwell, N.C., S.S. Martin, F.-W. Li, S. Mathews, J.C. LagariasNew Phytologist 214, 1145-1157 -
Genes translocated into the plastid inverted repeat show decelerated substitution rates and elevated GC content 2016
Full text...Li, F.-W., L.-Y. Kuo, K.M. Pryer, C.J. RothfelsGenome Biology and Evolution 8, 2452-2458 -
Asplenium pifongiae (Aspleniaceae: Polypodiales), a new species from Taiwan 2016
Full text...Li, F.-W., L.Y. Kuo, Y.H. Chang, T.C. Hsu, H.C. Hung, W.L. Chiou, C.J. Rothfels, Y.M. HuangSystematic Botany 41, 24-31 -
Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis 2016
Hsu, P.Y., L. Calviello, H.-.Y. L. Wu*, F.-W. Li*, C.J. Rothfels, U. Ohler, P.N. Benfey.Proceedings of the National Academy of Sciences USA 113, E7126-E7135 -
Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants 2016
Jia, Q., G. Li, T.G. Köllner, J. Fu, X. Chen, W. Xiong, B.J. Crandall-Stotler, J.L. Bowman, D.J. Weston, Y. Zhang, L. Chen, Y. Xie, F.-W. Li, C.J. Rothfels, A. Larsson, S.W. Graham, D.W. Stevenson, G.K.-S. Wong, J. Gershenzon, F. Chen.Proceedings of the National Academy of Sciences USA 113, 12328-12333 -
Next-generation polyploid phylogenetics: Rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing 2016
Rothfels, C.J., K.M. Pryer, F.-W. LiNew Phytologist 213, 413-429 -
Genetic analysis of Physcomitrella patens identifies ABSCISIC ACID NON-RESPONSIVE (ANR): a regulator of ABA responses unique to basal land plants, required for desiccation tolerance 2016
Stevenson, S.R., Y. Kamisugi, J. Schmutz, J.W. Jenkins, J. Grimwood, W. Muchero, G.A. Tuskan, S.A. Rensing, D. Lang, R. Reski, C. Trinh, M. Melkonian, C.J. Rothfels, F.-W. Li, A. Larsson, G.K.S. Wong, T. Edwards, A.C. Cuming.Plant Cell 28, 1310–1327 -
Maidenhair ferns, Adiantum, are indeed monophyletic, and sister to to the shoestring ferns, vittaroids (Pteridaceae) 2016
Pryer, K.M., L. Huiet, F.-W. Li, C.J. Rothfels, E. SchuettpelzSystematic Botany 41, 14-23 -
A community-derived classification for extant lycophytes and ferns 2016
The Pteridophyte Phylogeny Group.Journal of Systematics and Evolution 54, 563-603 -
Phytochrome diversity in green plants and the origin of canonical plant phytochromes 2015
Li, F.-W., M. Melkonian, C.J. Rothfels, J.C. Villareal, D. Stevenson, S.W. Graham, G.K.-S. Wong, K.M. Pryer, S. MathewsNature Communications 6, 7852 -
The origin and evolution of phototropins in plants 2015
Li, F.-W., C.J. Rothfels, M. Melkonian, J.C. Villarreal, D.W. Stevenson, S.W. Graham, G.K.-S. Wong, S. Mathews, and K.M. PryerFrontiers in Plant Science 6, 637 -
Evolutionary aspects of plant photoreceptors 2015
Li, F.-W., S. MathewsJournal of Plant Research 129, 115-122 -
Searching for diamonds in the apomictic rough: A case study involving Boechera lignifera (Brassicaceae). 2015
Windham, M.D., J.B. Beck, F.-W. Li, A. Allphin, J.G. Carman, C.A. Rushworth, E.M. Sigel, P.J. Alexander, C.D. Bailey, I.A. Al-ShehbazSystematic Botany 40, 1031-1044 -
An exploration into fern genome space 2015
Wolf, P.G., E.B. Sessa, D.B. Marchant, F.-W. Li, C.J. Rothfels, E.M. Sigel, M.A. Gitzendanner, C.J. Visger, J.A. Banks, D.E. Soltis, P.S. Soltis, K.M. Pryer, and J.P. DerGenome Biology and Evolution 7, 2533-2544 -
The evolutionary history of ferns inferred from 25 single-copy nuclear genes 2015
Rothfels C.J., F.-W. Li, E.M Sigel., L. Huiet, A. Larsson, D.O. Burge, M. Ruhsam, M. Deyholos, D. Soltis, N. Stewart, S. Shaw, L.M. Pokorny, T. Chen, C. dePamphilis, L. DeGironimo, D.W. Stevenson, S.W. Graham, G.K.-S. Wong, and K.M. PryerAmerican Journal of Botany 102, 1089-1107 -
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns 2014
Li, F.-W., J.C. Villarreal, S. Kelly, C.J. Rothfels, M. Melkonian, E. Frangedakis, M. Ruhsam, E. M. Sigel, J.P. Der, J. Pittermann, D.O. Burge, L. Pokorny, A. Larsson, T. Chen, S. Weststrand, P. Thomas, E. Carpenter, Y. Zhang, Z. Tian, L. Chen, Z. Yan, Y. Zhu, X. Sun, J. Wang, D.W. Stevenson, B.J. Crandall-Stotler, A.J. Shaw, M.K. Deyholos, D.E. Soltis, S.W. Graham, M.D. Windham, J.A. Langdale, G.K.S. Wong, S. Mathews & K.M. PryerProceedings of the National Academy of Sciences USA, 111, 6672-6677 -
Crowdfunding the Azolla fern genome project: a grassroots approach 2014
Li, F.-W., K.M. PryerGigaScience 3, 16 -
Between two fern genomes 2014
Sessa, E.B., J.A. Banks, M.S. Barker, J.P. Der, A.M. Duffy, S.W. Graham, M. Hasebe, J. Langdale, F.-W. Li, D.B. Marchant, K.M. Pryer, C.J. Rothfels, S.J. Roux, M.L. Salmi, E.M. Sigel, D.E. Soltis, P.S. Soltis, D.W. Stevenson, P.G. WolfGigaScience 3, 15 -
The hybrid origin of Adiantum meishanianum (Pteridaceae): a rare and endemic species in Taiwan 2014
Zhang, W.Y., L.Y. Kuo, F.-W. Li, C.N. Wang, W.L. ChiouSystematic Botany 39, 1034-1041 -
Transcriptome-mining for fern single-copy nuclear regions 2013
Rothfels, C.J., A. Larsson, F.-W. Li, E.M. Sigel, L. Huiet, D.O. Burge, M. Ruhsam, S. Graham, D. Stevenson, G.K.S. Wong, P. Korall, K.M. PryerPLoS One 8, e76957 -
Gaga, a new genus segregated from Cheilanthes (Pteridaceae) 2012
Li, F.-W., K.M. Pryer, M.D. WindhamSystematic Botany 37, 845-860 -
rbcL and matK earn two thumbs up as the core DNA barcode for ferns 2011
Li, F.-W., L.Y. Kuo, C.J. Rothfels, A. Ebihara, W.L. Chiou, M.D. Windham, K.M. PryerPLoS One 6, e26597 -
Book review: Knapp, Ralf. 2011. Ferns and Fern Allies of Taiwan 2011
Li, F.-W.Taxon 60, 1233-1234 -
The first insight into fern matK phylogeny 2011
Kuo*, L.Y., F.-W. Li*, W.L. Chiou, C.N. Wang.Molecular Phylogenetics and Evolution 59: 556-566 59, 556-566 -
Tissue-Direct PCR, a rapid and extraction-free method for barcoding of ferns 2010
Li*, F.-W., L.Y. Kuo*, Y.M. Huang, W.L. Chiou, C.N. WangMolecular Ecology Resources 10, 92-95 -
Identifying a mysterious aquatic fern gametophyte 2009
Li, F.-W., B.C. Tan, V. Buchbender, R.C. Moran, G. Rouhan, C.N. Wang, D. QuandtPlant Systematics and Evolution 281, 77-86
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Tomato receptor FLAGELLIN-SENSING 3 binds flgII-28 and activates the plant immune system. 2016
Full text...Hind S. R., S. R. Strickler, P. C. Boyle, D. M. Dunham, Z. Bao, I. M. O'Doherty, J. A. Baccile, J. S. Hoki, E. G. Viox, C. R. Clarke, B. A. Vinatzer, F. C. Schroeder and G. B. MartinNature Plants 2, 16128 -
Detecting N-myristoylation and S-acylation of host and pathogen proteins in plants using click chemistry. 2016
Full text...Boyle, P. C., S. Schwizer, S. R. Hind, C. M. Kraus, S. de la Torre Diaz, B. He and G. B. MartinPlant Methods 12:38 -
iTAK: a program for genome-wide prediction and classification of plant transcription factors, transcriptional regulators, and protein kinases. 2016
Full text...Zheng, Y., C. Jiao, H. Sun, H. G. Rosli, M. A. Pombo, P. Zhang, M. Banf, X. Dai, G. B. Martin, J. J. Giovannoni, P. X. Zhao, S. Y. Rhee and Z. FeiMolecular Plant 16, 30223-4 -
High-throughput CRISPR vector construction and generation of tomato hairy roots for the characterization of DNA modifications. 2016
Full text...Jacobs, T. B. and G. B. MartinJournal of Visualized Experiments 110, e53843 -
A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein. 2016
Full text...Worley, J. N., Pombo, M. A., Zheng, Y., Dunham, D. M., Myers, C. R., Fei, Z., Martin, G.BMC Genomics 10.1186, s12864-016-2534-4 -
Natural variation in tomato reveals differences in the recognition of AvrPto and AvrPtoB effectors from Pseudomonas syringae. 2016
Full text...Kraus, C. M., Munkvold, K. R., Martin, G. B.Molecular Plant 10.1016, j.molp.2016.03.001 -
Identification of a candidate gene in Solanum habrochaites for resistance to a race 1 strain of Pseudomonas syringae pv. tomato. 2015
Full text...Bao, Z., Meng, F., Strickler, S. R., Dunham, D. M., Munkvold, K. R., Martin, G. B.The Plant Genome 10.3835, plantgenome2015.02.0006 -
Pseudomonas syringae pv. tomato DC3000 type III secretion effector polymutants reveal an interplay between HopAD1 and AvrPtoB. 2015
Full text...Wei H. L., Chakravarthy, S., Mathieu, J., Helmann, T. C., Stodghill, P., Swingle, B., Martin, G. B., Collmer, A.Cell Host & Microbe 10.1016, j.chom.2015.05.007 -
Greasy tactics in the plant–pathogen molecular arms race. 2015
Full text...Boyle, P.C., and Martin, G.B.Journal of Experimental Botany 10.1093, jxb/erv059 -
The SGN VIGS tool: user-friendly software to design virus-induced gene silencing (VIGS) constructs for functional genomics. 2015
Full text...Fernandez-Pozo, N., Rosli, H.G., Martin, G.B., and Mueller, L.A.Molecular Plant 3, 486-488 -
Pto kinase binds two domains of AvrPtoB and its proximity to the effector E3 ligase determines if it evades degradation and activates plant immunity. 2014
Full text...Mathieu, J., Schwizer, S., Martin, G.B.PLoS Pathogens 10, e1004227 -
Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives. 2014
Strickler, S.R., Bombarely, A., Munkvold, J.D., Menda, N., Martin, G.B., and Mueller, L.A.PeerJ PrePrints 2, e377v1https://peerj.com/preprints/377v1/ -
Transcriptomic analysis reveals tomato genes whose expression is induced specifically during effector-triggered immunity and identifies the Epk1 protein kinase which is required for the host response to three bacterial effector proteins. 2014
Full text...Pombo, M.A., Zheng, Y., Fernandez-Pozo, N., Dunham, V., Fei, Z., and Martin, G.B.Genome Biology 15, 492 -
Nonhost Resistance of Tomato to the Bean Pathogen Pseudomonas syringae pv. syringae B728a Is Due to a Defective E3 Ubiquitin Ligase Domain in AvrPtoBB728a. 2013
Full text...Chien, C.F., Mathieu, J., Hsu, C.H., Boyle, P., Martin, G.B., and Lin, N.C.Molecular Plant-Microbe Interactions 26, 387-397 -
Allelic variation in two distinct Pseudomonas syringae flagellin epitopes modulates the strength of plant immune responses but not bacterial motility. 2013
Full text...Clarke, C.R., Chinchilla, D., Hind, S.R., Taguchi, F., Miki, R., Ichinose, Y., Martin, G.B., Leman, S., Felix, G., and Vinatzer, B.A.New Phytologist 200, 847-860 -
The Tomato Calcium Sensor Cbl10 and Its Interacting Protein Kinase Cipk6 Define a Signaling Pathway in Plant Immunity. 2013
Full text...de la Torre, F., Gutierrez-Beltran, E., Pareja-Jaime, Y., Chakravarthy, S., Martin, G.B., and del Pozo, O.Plant Cell 25, 2748-2764 -
Thymoquinone causes multiple effects, including cell death, on dividing plant cells. 2013
Full text...Hassanien, S.E., Ramadan, A.M., Azeiz, A.Z.A., Mohammed, R.A., Hassan, S.M., Shokry, A.M., Atef, A., Kamal, K.B.H., Rabah, S., Sabir, J.S.M., Abuzinadah, O.A., El-Domyati, F.M., Martin, G.B., and Bahieldin, A.Comptes Rendus Biologies 336, 546-556 -
Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity. 2013
Full text...Rosli, H. G., Zheng, Y., Pombo, M. A., Zhong, S., Bombarely, A., Fei, Z., Collmer, A., and Martin, G.B.Genome Biology 14, R139 -
Salmonella colonization activates the plant immune system and benefits from association with plant pathogenic bacteria. 2013
Full text...Meng, F., Altier, C., and Martin, G.B.Environmental Microbiology 15, 2418-2430 -
The Tomato Fni3 Lysine-63-Specific Ubiquitin-Conjugating Enzyme and Suv Ubiquitin E2 Variant Positively Regulate Plant Immunity. 2013
Full text...Mural, R.V., Liu, Y., Rosebrock, T.R., Brady, J.J., Hamera, S., Connor, R.A., Martin, G.B., and Zeng, L.R.Plant Cell 25, 3615-3631 -
Two leucines in the N-terminal MAPK-docking site of tomato SlMKK2 are critical for interaction with a downstream MAPK to elicit programmed cell death associated with plant immunity. 2013
Full text...Oh, C.S., Hwang, J., Choi, M.S., Kang, B.C., and Martin, G.B.FEBS Letters 587, 1460-1465 -
Plant programmed cell death caused by an autoactive form of Prf is suppressed by co-expression of the Prf LRR domain. 2012
Full text...Du, X.R., Miao, M., Ma, X.R., Liu, Y.S., Kuhl, J.C., Martin, G.B., and Xiao, F.M.Molecular Plant 5, 1058-1067 -
A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research. 2012
Full text...Bombarely, A., Rosli, H.G., Vrebalov, J., Moffett, P., Mueller, L.A., and Martin, G.B.Molecular Plant-Microbe Interactions 25, 1523-1530 -
The beta-subunit of the SnRK1 complex is phosphorylated by the plant cell death suppressor Adi3. 2012
Full text...Avila, J., Gregory, O.G., Su, D.Y., Deeter, T.A., Chen, S.X., Silva-Sanchez, C., Xu, S.L., Martin, G.B., and Devarenne, T.P.Plant Physiology 159, 1277-1290 -
Type III secretion and effectors shape the survival and growth pattern of Pseudomonas syringae on leaf surfaces. 2012
Full text...Lee, J., Teitzel, G.M., Munkvold, K., del Pozo, O., Martin, G.B., Michelmore, R.W., and Greenberg, J.T.Plant Physiology 158, 1803-1818 -
Suppression and Activation of the Plant Immune System by Pseudomonas syringae Effectors AvrPto and AvrPtoB. 2012
Full text...Martin, G.Effectors in Plant-Microbe Interactions 0: Wiley-Blackwell, 121-154 -
Molecular Mechanisms Involved in the Interaction Between Tomato and Pseudomonas syringae pv. tomato. 2012
Full text...Velasquez, A.C., and Martin, G.B.Molecular Plant Immunity. 0: Wiley-Blackwell, 187-209 -
A tomato LysM receptor-like kinase promotes immunity and its kinase activity is inhibited by AvrPtoB. 2012
Full text...Zeng L., Velasquez, A.C., Munkvold, K.R., Zhang, J., and Martin, G.B.The Plant Journal 69, 92-103 -
Tomato 14-3-3 protein TFT7 interacts with a MAP kinase kinase to regulate immunity-associated programmed cell death mediated by diverse disease resistance proteins. 2011
Full text...Oh, C.S., and Martin, G.B.Journal of Biological Chemistry 286, 14129-14136 -
Effector-triggered immunity mediated by the Pto kinase. 2011
Full text...Oh, C.S., and Martin, G.B.Trends in Plant Science 16, 132-140 -
Genetic disassembly and combinatorial reassembly identify a minimal functional repertoire of type III effectors in Pseudomonas syringae. 2011
Full text...Cunnac, S., Chakravarthy, S., Kvitko, B.H., Russell, A.B., Martin, G.B., and Collmer, A.Proceedings of the National Academy of Sciences 108, 2975-2980 -
Structural analysis of Pseudomonas syringae AvrPtoB bound to host BAK1 reveals two similar kinase-interacting domains in a type III effector. 2011
Full text...Cheng, W., Munkvold, K.R., Gao, H., Mathieu, J., Schwizer, S., Wang, S., Yan, Y.B., Wang, J., Martin, G.B., and Chai, J.Cell Host Microbe 10, 616-626 -
Endosome-associated CRT1 functions early in resistance gene-mediated defense signaling in Arabidopsis and tobacco. 2010
Full text...Kang, H.G., Oh, C.S., Sato, M., Katagiri, F., Glazebrook, J., Takahashi, H., Kachroo, P., Martin, G.B., and Klessig, D.F.Plant Cell 22, 918-936 -
Two virulence determinants of type III effector AvrPto are functionally conserved in diverse Pseudomonas syringae pathovars. 2010
Full text...Nguyen, H.P., Yeam, I., Angot, A., and Martin, G.B.New Phytologist 187, 969-982 -
Methods to study PAMP-triggered immunity using tomato and Nicotiana benthamiana. 2010
Full text...Nguyen, H.P., Chakravarthy, S., Velasquez, A.C., McLane, H.L., Zeng, L., Nakayashiki, H., Park, D.H., Collmer, A., and Martin, G.B.Molecular Plant Microbe Interactions 23, 991-999 -
Identification of Nicotiana benthamiana genes involved in pathogen-associated molecular pattern-triggered immunity. 2010
Full text...Chakravarthy, S., Velasquez, A.C., Ekengren, S.K., Collmer, A., and Martin, G.B.Molecular Plant Microbe Interactions 23, 715-726 -
A secreted effector protein (SNE1) from Phytophthora infestans is a broadly acting suppressor of programmed cell death. 2010
Full text...Kelley, B.S., Lee, S.J., Damasceno, C.M.B., Chakravarthy, S., Kim, B.D., Martin, G.B., and Rose, J.K.C.Plant J. 62, 357-366 -
Tomato 14-3-3 protein 7 positively regulates immunity-associated programmed cell death by enhancing protein abundance and signaling ability of MAPKKK {alpha}. 2010
Full text...Oh, C.S., Pedley, K.F., and Martin, G.B.Plant Cell 22, 260-272 -
Phosphorylation of the Pseudomonas syringae effector AvrPto is required for FLS2/BAK1-independent virulence activity and recognition by tobacco. 2010
Full text...Yeam, I., Nguyen, H.P., and Martin, G.B.Plant Journal 61, 16-24 -
Virus-induced gene silencing (VIGS) in Nicotiana benthamiana and tomato. 2009
Full text...Velasquez, A.C., Chakravarthy, S., and Martin, G.B.J. Vis. Exp. 28, 1292 -
Assay for pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) in plants. 2009
Full text...Chakravarthy, S., Velasquez, A.C., and Martin, G.B.Journal of Visualized Experiments 31, 1442 -
Deletions in the repertoire ofPseudomonas syringae pv. tomato DC3000 type III secretion effector genes reveal functional overlap among effectors. 2009
Full text...Kvitko, B.H., Park, D.H., Velasquez, A.C., Wei, C.F., Russell, A.B., Martin, G.B., Schneider, D.J., and Collmer, A.PLoS Pathogens 5, e1000388 -
Crystal structure of the complex between Pseudomonas effector AvrPtoB and the tomato Pto kinase reveals both a shared and a unique interface compared with AvrPto-Pto. 2009
Full text...Dong, J., Xiao, F.M., Fan, F.X., Gu, L.C., Cang, H.X., Martin, G.B., and Chai, J.J.Plant Cell 21, 1846-1859 -
Bacterial effectors target the common signaling partner BAK1 to disrupt multiple MAMP receptor-signaling complexes and impede plant immunity. 2008
Full text...Shan, L.B., He, P., Li, J.M., Heese, A., Peck, S.C., Nurnberger, T., Martin, G.B., and Sheen, J.Cell Host & Microbe 4, 17-27 -
A bacterial E3 ubiquitin ligase targets a host protein kinase to disrupt plant immunity. 2007
Full text...Rosebrock, T. R., Zeng, L., Brady, J.J., Abramovitch, R.B., Xiao, F., and Martin, G.B.Nature 448, 370-374 -
A Bacterial Inhibitor of Host Programmed Cell Death Defenses Is an E3 Ubiquitin Ligase. 2006
Full text...Janjusevic, R., Abramovitch, R.B., Martin, G,B, and Stebbins, C.E.Science 311, 222-226 -
Host-Mediated Phosphorylation of Type III Effector AvrPto Promotes Pseudomonas Virulence and Avirulence in Tomato. 2006
Full text...Anderson, J. C., Pascuzzi, P.E., Xiao, F., Sessa, G., and Martin, G.B.Plant Cell 18, 502-514 -
Type III Effector AvrPtoB Requires Intrinsic E3 Ubiquitin Ligase to Suppress Plant Cell Death and Immunity. 2006
Full text...Abramovitch, R. B., Janjusevic, R., Stebbins, C.E., and Martin, G.B.Proceedings of the National Academy of Sciences U S A 103, 2851-2856 -
Bacterial elicitation and evasion of plant innate immunity. 2006
Full text...Abramovitch, R. B., Anderson, J.C., and Martin, G.B.Nature Reviews Molecular Cell Biology 7, 601-611 -
Specific bacterial suppressors of MAMP signaling upstream of MAPKKK in Arabidopsis innate immunity. 2006
Full text...He, P., Shan, L., Lin, N.-C., Martin, G.B., Kemmerling, B., Nurnberger, T., and Sheen, J.Cell 125, 563-575 -
MAPKKKα is a Positive Regulator of Cell Death Associated with both Plant Immunity and Disease. 2004
Full text...del Pozo, O., Pedley, K.F., and Martin, G.B.EMBO Journal 23, 3072-3082 -
Molecular Basis of Pto-mediated Resistance to Bacterial Speck Disease in Tomato. 2003
Full text...Pedley, K. F., and Martin, G.B.Annual Reviews of Phytopathology 41, 215-243 -
Understanding the Functions of Plant Disease Resistance Proteins. 2003
Full text...Martin, G.B., Bogdanove, A.J., and Sessa, G.Annual Review of Plant Biology 54, 23-61 -
Pseudomonas Type III Effector AvrPtoB Induces Plant Disease Susceptibility by Inhibition of Host Programmed Cell Death. 2003
Full text...Abramovitch, R. B., Kim, Y.J., Chen, S.R., Dickman, M.B., and Martin, G.B.EMBO Journal 22, 60-69 -
Two highly distinct Pseudomonaseffector proteins interact with the Pto kinase and activate plant immunity. 2002
Full text...Kim, Y.-J., Lin, N.-C., and Martin, G.B.Cell 109, 589-598 -
Ancient origin of pathogen recognition specificity conferred by the tomato disease resistance gene Pto. 2001
Full text...Riely, B., and Martin, G.B.Proceedings of the National Academy of Sciences U S A 98, 2059-2064 -
Thr38 and Ser198 are Pto Autophosphorylation Sites Required for the AvrPto-Pto-mediated Hypersensitive Response. 2000
Full text...Sessa, G., D’Ascenzo, M., and Martin, G.B.EMBO Journal 19, 2257-2269 -
Recognition Specificity for the Bacterial Avirulence Protein AvrPto is Determined by Thr-204 in the Activation Loop of the Tomato Pto Kinase. 1998
Full text...Frederick, R., Thilmony, R.L., Sessa, G., and Martin, G.B.Molecular Cell 2, 241-245 -
Initiation of Plant Disease Resistance by Physical Interaction of AvrPto and Pto Kinase. 1996
Full text...Tang, X., Frederick, R., Halterman, D., Zhou, J., and Martin, G.B.Science 274, 2060-2063 -
The Tomato Gene Pti1 Encodes a Serine/threonine Kinase That is Phosphorylated by Pto and is Involved in the Hypersensitive Response. 1995
Full text...Zhou, J., Loh, Y.T., and Martin, G.B.Cell 83, 925-935 -
A Member of the Tomato Pto Gene Family Confers Sensitivity to Fenthion Resulting in Rapid Cell Death. 1994
Full text...Martin, G. B., Frary, A., Wu, T., Brommonschenkel, S., Chunwongse, J., Earle, E.D., and Tanksley, S.D.Plant Cell 6, 1543-1552 -
Map-based Cloning of a Protein Kinase Gene Conferring Disease Resistance in Tomato. 1993
Full text...Martin, G. B., Brommonschenkel, S.H., Chunwongse, J., Frary, A., Ganal, M.W., Spivey, R., Wu, T., Earle, E.D., and Tanksley, S.D.Science 262, 1432-1436 -
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An acorn squash (Cucurbita pepo ssp. ovifera) fruit and seed transcriptome as a resource for the study of fruit traits in Cucurbita 2015
Full text...Wyatt, L.E., Strickler, S.R., Mueller, L.A., and Mazourek, M.Horticulture Research , 14070, 14070 -
Differential regulation of caffeine metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta) 2015
Full text...Perrois, C., Strickler, S.R., Mathieu, G., Lepelley, M., Bedon, L., Michaux, S., Husson, J., Mueller, L., and Privat, I.Planta 241(1), 179-191 -
The Sol Genomics Network (SGN)—from genotype to phenotype to breeding 2014
Full text...Fernandez-Pozo, N., Menda, N., Edwards, J.D., Saha, S., Tecle, I.Y., Strickler, S.R., Bombarely, A., Fisher-York, T., Pujar, A., Foerster, H., Yan, A., and Mueller, L.A.Nucl. Acids Res. 43 (D1), D1036-D1041 -
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases 2014
Full text...Caspi, R., Altman, T., Billington, R., Dreher, K., Foerster, H., Fulcher, C.A., Holland, T.A., Keseler, I.M., Kothari, A., Kubo, A., Krummenacker, M., Latendresse, M., Mueller, L.A., Ong, Q., Paley, S., Subhraveti, P., Weaver, D.S., Weerasinghe, D., Zhang, P.F., and Karp, P.D.Nucleic Acids Research 42, D459-D471. -
The SGN VIGS tool: user-friendly software to design virus-induced gene silencing (VIGS) constructs for functional genomics 2015
Full text...Fernandez-Pozo, N., Rosli, H.G., Martin, G.B., and Mueller, L.A.Mol. Plant 3, 486-488 -
Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives 2014
Full text...Strickler, S.R., Bombarely, A., Munkvold, J.D., Menda, N., Martin, G.B., and Mueller, L.A.PeerJ PrePrints 2, e377v1 -
A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research. 2012
Full text...Bombarely, A., Rosli, H.G., Vrebalov, J., Moffett, P., Mueller, L.A., and Martin, G.B.Mol. Plant-Microbe Interact. 25, 1523-1530 -
Linking the potato genome to the conserved ortholog set (COS) markers 2013
Full text...Lindqvist-Kreuze, H., Cho, K., Portal, L., Rodriguez, F., Simon, R., Mueller, L.A., Spooner, D.M., and Bonierbale, M.BMC Genetics 14, 51 -
Advances in tomato research in the post-genome era 2013
Full text...Menda, N., Strickler, S.R., and Mueller, L.A.Plant Biotechnology 30, 243-256 -
From manual curation to visualization of gene families and networks across Solanaceae plant species 2013
Full text...Pujar, A., Menda, N., Bombarely, A., Edwards, J.D., Strickler, S.R., and Mueller, L.A.Database : The Journal of Biological Databases and Curation (Oxford) 2013, bat028 -
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions 2012
Full text...Guo, S., Zhang, J., Sun, H., Salse, J., Lucas, W., Zhang, H., Zheng, Y., Mao, L., Ren, Y., Wang, Z., Min, J., Guo, X., Murat, F., Ham, B., Zhang, Z., Gao, S., Huang, M., Xu, Y., Zhong, S., Bombarely, A., Mueller, L., Zhao, H., He, H., Zhang, Y., Zhang, Z., Huang, S., Tan, T., Pang, E., Lin, K., Hu, Q., Kuang, H., Ni, P., Wang, B., Liu, J., Kou, Q., Hou, W., Zou, X., Jiang, J., Gong, G., Klee, K., Schoof, H., Huang, Y., Hu, X., Dong, S., Liang, D., Wang, J., Wu, K., Xia, Y., Zhao, X., Zheng, Z., Xing, M., Liang, X., Huang, B., Lv, T., Wang, J., Yin, Y., Yi, H., Li, R., Wu, M., Levi, A., Zhang, X., Giovannoni, J., Wang, J., Li, Y., Fei, Z., and Xu, Y.Nature Genetics 45, 51-58 -
Molecular Phylogeny of Daucus (Apiaceae) 2013
Full text...Spooner, D., Rojas, P., Bonierbale, M., Mueller, L.A., Srivastav, M., Senalik, D., and Simon, P.Systematic Botany 38, 850-857 -
The tomato kinome and the TOKN ORFeome: resources for the study of kinases and signal transduction in tomato and Solanaceae. 2014
Full text...Singh, D.K., Calviño, M., Brauer, E.K.*, Fernandez-Pozo, N.*, Strickler, S., Yalamanchili, R., Suzuki, H., Aoki, K., Shibata, D., Stratmann, J.W., Popescu, G.V., Mueller, L., and Popescu, S.C. *co-third authorsMol. Plant Microbe Interact. 27, 7-17. Article featured as an MPMI Editor’s Pick: Kinases and Signal Transduction in Tomato and Solanaceae Species, 16 January 2014. REU students Ann Guggisberg and Jade Newsome are acknowledged for their contributions -
Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective 2012
Full text...Bombarely, A., Edwards, K.D., Sanchez-Tamburrino, J., and Mueller, L.A.BMC Genomics 13, 406 -
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases 2012
Full text...Caspi, R., Altman, T., Dreher, K., Fulcher, C.A., Subhraveti, P., Keseler, I.M., Kothari, A., Krummenacker, M., Latendresse, M., Mueller, L.A., Ong, Q., Paley, S., Pujar, A., Shearer, A.G., Travers, M., Weerasinghe, D., Zhang, P.F., and Karp, P.D.Nucleic Acids Research 40, D742-D753 -
Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota) 2012
Full text...Cai, D.Y., Rodriguez, F., Teng, Y.W., Ane, C., Bonierbale, M., Mueller, L.A., and Spooner, D.M.BMC Evol. Biol. 12, 70 -
Enabling proteomic studies with RNA-Seq: The proteome of tomato pollen as a test case 2012
Full text...Lopez-Casado, G., Covey, P.A., Bedinger, P.A., Mueller, L.A., Thannhauser, T.W., Zhang, S., Fei, Z.J., Giovannoni, J.J., and Rose, J.K.C.Proteomics, 12, 761-774 -
Trait diversity and potential for selection indices based on variation among regionally adapted processing tomato germplasm 2012
Full text...Merk, H.L., Yarnes, S.C., Van Deynze, A., Tong, N.K., Menda, N., Mueller, L.A., Mutschler, M.A., Loewen, S.A., Myers, J.R., and Francis, D.M.J. Am. Soc. Hortic. Sci. 137, 427-437 -
Designing a transcriptome next-generation sequencing project for a nonmodel plant species 2012
Full text...Strickler, S.R., Bombarely, A., and Mueller, L.A.Am. J. Bot. 99, 257-266 -
The Tomato Genome Consortium. 2009. A snapshot of the emerging tomato genome sequence. 2009
Full text...The Plant Genome 2, 78-92 -
The ‘PUCE CAFE’ project: the first 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits 2011
Full text...Privat, I., Bardil, A., Gomez, A.B., Severac, D., Dantec, C., Fuentes, I., Mueller, L., Joet, T., Pot, D., Foucrier, S., Dussert, S., Leroy, T., Journot, L., de Kochko, A., Campa, C., Combes, M.C., Lashermes, P., and Bertrand, B.BMC Genomics 12, 5 -
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data 2011
Full text...Jung, S., Menda, N., Redmond, S., Buels, R.M., Friesen, M., Bendana, Y., Sanderson, L.A., Lapp, H., Lee, T., MacCallum, B., Bett, K.E., Cain, S., Clements, D., Mueller, L.A., and Main, D.Database: The Journal of Biological Databases and Curation ]2011], bar051 -
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl 2011
Full text...Bombarely, A., Menda, N., Tecle, I.Y., Buels, R.M., Strickler, S., Fischer-York, T., Pujar, A., Leto, J., Gosselin, J., and Mueller, L.A.Nucleic Acids Res. 39, D1149-1155 -
TobEA: an atlas of tobacco gene expression from seed to senescence 2010
Full text...Edwards, K.D., Bombarely, A., Story, G.W., Allen, F., Mueller, L.A., Coates, S.A., and Jones, L.BMC Genomics 11, 142 -
Advances in Coffea genomics 2010
Full text...De Kochko, A., Akaffou, S., Andrade, A.C., Campa, C., Crouzillat, D., Guyot, R., Hamon, P., Ming, R., Mueller, L.A., Poncet, V., Tranchant-Dubreuil, C., and Hamon, S.Advances in Botanical Research 53, 23-63 -
Analysis of Ultra Low Genome Conservation in Clostridium difficile 2010
Full text...Scaria, J., Ponnala, L., Janvilisri, T., Yan, W.W., Mueller, L.A., and Chang, Y.F.PLoS ONE 5, e15147 -
solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database 2010
Full text...Tecle, I.Y., Menda, N., Buels, R.M., van der Knaap, E., and Mueller, L.A.BMC Bioinformatics 11, 525 -
Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants 2010
Full text...Zhang, P.F., Dreher, K., Karthikeyan, A., Chi, A., Pujar, A., Caspi, R., Karp, P., Kirkup, V., Latendresse, M., Lee, C., Mueller, L.A., Muller, R., and Rhee, S.Y.Plant Physiology 153, 1479-1491 -
A dynamic interface for capsaicinoid systems biology 2009
Full text...Mazourek, M., Pujar, A., Borovsky, Y., Paran, I., Mueller, L., and Jahn, M.M.Plant Physiology 150, 1806-1821 -
A community-based annotation framework for linking Solanaceae genomes with phenomes 2008
Full text...Menda, N., Buels, R.M., Tecle, I., and Mueller, L.A.Plant Physiology 147, 1788-1799 -
Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade 2006
Full text...Wu, F., Mueller, L.A., Crouzillat, D., Petiard, V., and Tanksley, S.D.Genetics 174, 1407-1420 -
EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot 2006
Full text...Carlson, J.E., Leebens-Mack, J.H., Wall, P.K., Zahn, L.M., Mueller, L.A., Landherr, L.L., Hu, Y., Ilut, D.C., Arrington, J.M., Choirean, S., Becker, A., Field, D., Tanksley, S.D., Ma, H., and dePamphilis, C.W.Plant Mol. Biol. 62, 351-369 -
Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts 2005
Full text...Lin, C., Mueller, L.A., Carthy, J.M., Crouzillat, D., Petiard, V., and Tanksley, S.D.Theor. Appl. Genet. 112(1), 114–130 -
MetaCyc and AraCyc. Metabolic pathway databases for plant research 2005
Full text...Zhang, P., Foerster, H., Tissier, C.P., Mueller, L., Paley, S., Karp, P.D., and Rhee, S.Y.Plant Physiology 138, 27-37 -
The Tomato Sequencing Project, the First Cornerstone of the International Solanaceae Project (SOL) 2005
Full text...Mueller, L. A., Tanksley, S.D., Giovannoni, J., Van Eck, J., Stack, S., Choi, D., Kim, B.D., Chen, M., Cheng, Z., Li, C., Ling, H., Xue, Y., Seymour, G., Bishop, G., Bryan, G., Sharma, R., Khurana, J., Tyagi, A., Chattopadhyay, D., Singh, N.K., Stiekema, W., Lindhout, P., Jesse, T., Lankhorst, R.K., Bouzayen, M., Shibata, D., Tabata, S., Granell, A., Botella, M.A., Giuliano, G., Frusciante, L., Causse, M., and Zamir, D.Comparative and Functional Genomics 6, 153-158 -
Querying and computing with BioCyc databases 2005
Full text...Krummenacker, M., Paley, S.M., Mueller, L.A., Yan, T., and Karp, P.D.Bioinformatics 21, 3454-3455 -
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments 2005
Full text...Wang, Y., van der Hoeven, R.S., Nielsen, R., Mueller, L.A., and Tanksley, S.D.Theor. Appl. Genet. 6, 1-13 -
PatMatch: a program for finding patterns in peptide and nucleotide sequences 2005
Full text...Yan, T., Yoo, D., Berardini, T.Z., Mueller, L.A., Weems, D.C., Weng, S., Cherry, J.M., Rhee, S.Y.Nucleic Acids Res. 33 (Web Server issue), W262-266 -
Floral gene resources from basal angiosperms for comparative genomics research 2005
Full text...Albert, V.A., Soltis, D.E., Carlson, J.E., Farmerie, W.G., Wall, P.K., Ilut, D.C., Solow, T.M., Mueller, L.A., Landherr, L.L., Hu, Y., Buzgo, M., Kim, S., Yoo, M.J., Frohlich, M.W., Perl-Treves, R., Schlarbaum, S.E., Bliss, B.J., Zhang, X., Tanksley, S.D., Oppenheimer, D.G., Soltis, P.S., Ma, H., DePamphilis, C.W., and Leebens-Mack, J.H.BMC Plant Biol. 5, 5 -
The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond 2005
Full text...Mueller, L.A., Solow, T.H., Taylor, N., Skwarecki, B., Buels, R., Binns, J., Lin, C., Wright, M.H., Ahrens, R., Wang, Y., Herbst, E.V., Keyder, E.R., Menda, N., Zamir, D., and Tanksley, S.D.Plant Physiology 138, 1310-1317 -
Related Articles, Links Abstract Functional annotation of the Arabidopsis genome using controlled vocabularies 2004
Full text...Berardini, T.Z., Mundodi, S., Reiser, L., Huala, E., Garcia-Hernandez, M., Zhang, P., Mueller, L.A., Yoon, J., Doyle, A., Lander, G., Moseyko, N., Yoo, D., Xu, I., Zoeckler, B., Montoya, M., Miller, N., Weems, D., and Rhee, S.Y.Plant Physiology 135, 745-55 -
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes 2004
Full text...Thimm, O., Blasing, O., Gibon, Y., Nagel, A., Meyer, S., Kruger, P., Selbig, J., Muller, L.A., Rhee, S.Y., and Stitt, M.Plant J. 37, 914-939 -
MetaCyc: a multiorganism database of metabolic pathways and enzymes 2004
Full text...Krieger, C., Zhang, P., Mueller, L.A., Wang, A., Paley, S., Arnaud, M., Pick, J., Rhee, S., and Karp, P.Nucleic Acids Research 32, Database Issue, 438-442 -
AraCyc: An Arabidopsis thaliana biochemical pathway database 2003
Full text...Mueller, L.A., Zhang, P., and Rhee, S.Plant Physiology 132, 453-460 -
A sequence based map of Arabidopsis genes with mutant phenotypes 2003
Full text...Meinke, D.W., Meinke, L.K., Showalter, T.C., Schissel, A.M., Mueller, L.A., and Tzafrir, I.Plant Physiology 131, 409-418 -
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community 2003
Full text...Rhee, S.Y., Beavis, W., Berardini, T.Z., Chen, G., Dixon, D., Doyle, A., Garcia-Hernandez, M., Huala, E., Lander, G., Montoya, M., Miller, N., Mueller, L.A., Mundodi, S., Reiser, L., Tacklind, J., Weems, D.C., Wu, Y., Xu, I., Yoo, D., Yoon, J., and Zhang, P.Nucleic Acids Research 31, 224-228 -
TAIR: a resource for integrated Arabidopsis data 2002
Full text...Garcia-Hernandez, M., Berardini, T.Z., Chen, G., Crist, D., Doyle, A., Huala, E., Knee, E., Lambrecht, M., Miller, N., Mueller, L.A., Mundodi, S., Reiser, L., Rhee, S.Y., Scholl, R., Tacklind, J., Weems, D.C., Wu, Y., Xu, I., Yoo, D., Yoon, J., and Zhang, P.Funct. Integr. Genomic. 2, 239-253 -
StressDB: A locally installable web-based relational microarray database designed for small user communities 2002
Full text...Mitra, M., Shah, N., Mueller, L., Pin, S., and Fedoroff, N.Comp. Funct. Genom. 3, 91–96. -
Differential aggregation of the Trembler and Trembler J mutants of peripheral myelin protein 22 2002
Full text...Tobler, A.R., Liu, N., Mueller, L., and Shooter, E.M.P. Natl. Acad. Sci. U S A 99, 483-488 -
Surviving in a sea of data: a survey of plant genome data resource and issues in building data management systems 2001
Full text...Reiser, L., Mueller, L.A., Rhee, S.Plant Molecular Biology 48, 59-74 -
Models for the Vacuolar Sequestration of Anthocyanins 2001
Full text...Mueller, L.A., Walbot, V.In Recent Advances in Phytochemistry. (Romeo, J.T, Saunders, J.A., Matthews, B.F, Editors.) 35, 297-312 -
The Arabidopsis Information Resource (TAIR): A comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant 2001
Full text...Huala, E., Dickerman, A., Garcia-Hernandez, M., Weems, D., Reiser, L., LaFond, F., Hanley, D., Kiphart, D., Zhuang, J., Huang, W., Mueller, L. A., Bhattacharyya, D., Bhaya, D., Sobral, B., Beavis, B., Somerville, C., and Rhee, S.Y.Nucleic Acids Research 29, 102-105 -
AN9, a glutathione S-transferase from Petunia required for vacuolar sequestration of anthocyanins, is a flavonoid binding protein 2000
Full text...Mueller, L.A., Silady, R., Goodman, C.D., and Walbot, V., 123, 1561-1570 123, 1561-1570 -
Biochemical Complementation of the betalain biosynthetic pathway in Portulaca grandiflora by a fungal 3,4-dihydroxyphenylalanine dioxygenase 1997
Full text...Mueller, L. A., Hinz, U., Uze, M., Sautter, C., Zryd, J.P.Planta 203, 260-263 -
Recombinant DOPA dioxygenase catalyzes the conversion of DOPA to muscaflavin and betalamic acid 1996
Full text...Mueller, L.A., Hinz, U., Zryd, J.P.Phytochemistry 44, 567-569 -
Characterization of a tyrosinase from Amanita muscaria involved in betalain biosynthesis 1996
Full text...Mueller, L.A., Hinz, U., Zryd, J.P.Phytochemistry 42, 1511-1515
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VIM proteins regulate transcription exclusively through the MET1 cytosine methylation pathway 2014
Full text...Shook, M.S., and Richards, E.J.Epigenetics 9, 980–986 -
Arabidopsis CROWDED NUCLEI (CRWN) proteins are required for nuclear size control and heterochromatin organization 2013
Full text...Wang, H., Dittmer, T. A., and Richards, E. J.BMC Plant Biology 13, 200 -
Reading the second code: mapping epigenomes to understand plant growth, development, and adaptation to the environment 2012
Full text...Berger, F., Cao, X.F., Chandler, V., Dennis, L., Martienssen, R., Meyers, B., Pikaard, C., Peacock, J., Richards, E., Wagner, D., Weigel, D., Colot, V., Deal, R., Dean, C., Ecker, J., Gehring, M., Gong, Z.Z., Gregory, B., Rodrigo, G., Gutierrez-Marcos, J., Hasebe, M., Hwang, I.D., Jacobsen, S., Kakutani, T., Li, J.Y., Michaels, S., Noh, Y.S., Provart, N., Vaughn, M., and Comm, E.P.Plant Cell 24, 2257-2261 -
Natural epigenetic variation in plant species: A view from the field 2011
Full text...Richards, E.J.Curr. Opin. Plant Biol. 14, 204-209 -
The structure, organization and radiation of Sadhu non-long terminal repeat retroelements in Arabidopsis species 2010
Full text...Rangwala, S.H., and Richards, E.J.Mob. DNA 1, 10 -
Quantitative epigenetics: DNA sequence variation need not apply 2009
Full text...Richards, E.J.Genes Dev. 23, 1601-1605 -
Three SRA-Domain Methylcytosine-Binding Proteins Cooperate to Maintain Global CpG Methylation and Epigenetic Silencing in Arabidopsis 2008
Full text...Woo, H.R., Dittmer, T.A., Richards, E.J.PLoS Genetics 4(8), e1000156 -
VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization 2007
Full text...Woo, H.R., Pontes, O., Pikaard, C.S., and Richards, E.J.Genes Dev. 21, 267-277 -
Differential epigenetic regulation within an Arabidopsis retroposon family 2007
Full text...Rangwala, S.H., and Richards, E.J.Genetics 176, 151-160 -
LITTLE NUCLEI genes affecting nuclear morphology in Arabidopsis thaliana 2007
Full text...Dittmer, T.A., Stacey, N.J., Sugimoto-Shirasu, K., and Richards, E.J.Plant Cell 19, 2793-2803 -
A cluster of disease resistance genes in Arabidopsis is coordinately regulated by transcriptional activation and RNA silencing 2007
Full text...Yi, H., and Richards, E.J.Plant Cell 19, 2929-2939 -
Meiotically-stable natural epialleles of Sadhu, a novel Arabidopsis retroposon 2006
Full text...Rangwala, R., Elumalai, R., Vanier, C., Ozkan, H., Galbraith, D.W., and Richards, E.J.PLoS Genetics 2, e36 -
Natural variation in a subtelomeric region of Arabidopsis: implications for the genomic dynamics of a chromosome end 2006
Full text...Kuo, H.-F., Olsen, K.M., and Richards, E.J.Genetics 173, 401-417 -
Inherited epigenetic variation 2006
Full text...Richards, E.J.Nature Reviews Genetics , 395-401, 395-401 -
Genetic variation in epigenetic inheritance of ribosomal gene methylation in Arabidopsis 2005
Full text...Riddle, N.C., and Richards, E.J.Plant J. 41,, 524-532 -
Arabidopsis MET1 cytosine methyltransferase mutants 2003
Full text...Kankel, M.W., Ramsey, D.E., Stokes, T.L., Flowers, S.K., Haag, J.R., Jeddeloh, J.A., Riddle, N.C., Verbsky, M.L., and Richards, E.J.Genetics 163, 1109-1122 -
Epigenetic variation in Arabidopsis disease resistance 2002
Full text...Stokes, T.L., Kunkel, B.N., and Richards, E.J.Genes Dev. 16, 171-182 -
Induced instability of two Arabidopsis constitutive pathogen-response alleles 2002
Full text...Stokes, T.L., and Richards, E.J.P. Natl. Acad. Sci. U S A 99, 7792-7796 -
The control of natural variation in cytosine methylation in Arabidopsis 2002
Full text...Riddle, N.C., and Richards, E.J.Genetics 162, 355-363 -
The DNA methylation locus DDM1 is required for maintenance of gene silencing in Arabidopsis 1998
Full text...Jeddeloh, J.A, Bender, J., and Richards, E.J.Genes Dev. 12, 1714-1725 -
Developmental abnormalities and epimutations associated with DNA hypomethylation mutations 1996
Full text...Kakutani, T., Jeddeloh, J.A., Flowers, S., Munakata, K., and Richards, E.J.P. Natl. Acad. Sci. U S A 93, 12406-12411 -
Arabidopsis thaliana DNA methylation mutants 1993
Full text...Vongs, A., Kakutani, T., Martienssen, R., and Richards, E.J.Science , 1926-1928, 1926-1928
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Larval crowding accelerates C. elegans development and reduces lifespan. 2017
Full text...Ludewig AH, Gimond C, Judkins JC, Thornton S, Pulido DC, Micikas RJ, Döring F, Antebi A, Braendle C, Schroeder FC.PloS Genet 13(4), 1006717 -
Biosynthesis of Modular Ascarosides in C. elegans. 2017
Full text...Panda O, Akagi AE, Artyukhin AB, Judkins JC, Le HH, Mahanti P, Cohen SM, Sternberg PW, Schroeder FC.Angew Chem Int Ed Engl 56(17), 4729-4733 -
Molecular Determinants of the Regulation of Development and Metabolism by Neuronal eIF2α Phosphorylation in Caenorhabditis elegans. 2017
Full text...Kulalert W, Sadeeshkumar H, Zhang YK, Schroeder FC, Kim DHGenetics 117, 200568 -
Nematophagous fungus Arthrobotrys oligospora mimics olfactory cues of sex and food to lure its nematode prey. 2017
Full text...Hsueh YP, Gronquist MR, Schwarz EM, Nath RD, Lee CH, Gharib S, Schroeder FC, Sternberg PW.Elife 6, e20023 -
Elucidating the Rimosamide-Detoxin Natural Product Families and Their Biosynthesis Using Metabolite/Gene Cluster Correlations. 2016
Full text...McClure RA, Goering AW, Ju KS, Baccile JA, Schroeder FC, Metcalf WW, Thomson RJ, Kelleher NL.ACS Chem Biol 11(12), 3452-3460 -
Cyclic cis-Locked Phospho-Dipeptides Reduce Entry of AβPP into Amyloidogenic Processing Pathway. 2017
Full text...Fisher CL, Resnick RJ, De S, Acevedo LA, Lu KP, Schroeder FC, Nicholson LK.J Alzheimers Dis 55(1), 391-410 -
Tomato receptor FLAGELLIN-SENSING 3 binds flgII-28 and activates the plant immune system. 2016
Full text...Hind SR, Strickler SR, Boyle PC, Dunham DM, Bao Z, O'Doherty IM, Baccile JA, Hoki JS, Viox EG, Clarke CR, Vinatzer BA, Schroeder FC, Martin GB.Nat Plants 2, 16128 -
BLIMP-1/BLMP-1 and Metastasis-Associated Protein Regulate Stress Resistant Development in Caenorhabditis elegans. 2016
Full text...Hyun M, Kim J, Dumur C, Schroeder FC, You YJ.Genetics 203(4), 1721-32 -
Functional Conservation and Divergence of daf-22 Paralogs in Pristionchus pacificus Dauer Development. 2016
Full text...Markov GV, Meyer JM, Panda O, Artyukhin AB, Claaßen M, Witte H, Schroeder FC, Sommer RJ.Mol Biol Evol 33(10), 2506-14 -
Plant-like biosynthesis of isoquinoline alkaloids in Aspergillus fumigatus. 2016
Full text...Baccile JA, Spraker JE, Le HH, Brandenburger E, Gomez C, Bok JW, Macheleidt J, Brakhage AA, Hoffmeister D, Keller NP, Schroeder FC.Nat Chem Biol 12(6), 419-24 -
Erratum: Mating dynamics in a nematode with three sexes and its evolutionary implications. 2016
Full text...Chaudhuri J, Bose N, Tandonnet S, Adams S, Zuco G, Kache V, Parihar M, von Reuss SH, Schroeder FC, Pires-daSilva A.Sci Rep 6, 23852 -
A Forward Genetic Screen for Molecules Involved in Pheromone-Induced Dauer Formation in Caenorhabditis elegans. 2016
Full text...Neal SJ, Park J, DiTirro D, Yoon J, Shibuya M, Choi W, Schroeder FC, Butcher RA, Kim K, Sengupta P.G3 (Bethesda) 6(5), 1475-87 -
Contrasting responses within a single neuron class enable sex-specific attraction in Caenorhabditis elegans. 2016
Full text...Narayan A, Venkatachalam V, Durak O, Reilly DK, Bose N, Schroeder FC, Samuel AD, Srinivasan J, Sternberg PW.Proc Natl Acad Sci 113(10), E1392-401 -
Amorfrutin C Induces Apoptosis and Inhibits Proliferation in Colon Cancer Cells through Targeting Mitochondria. 2016
Full text...Weidner C, Rousseau M, Micikas RJ, Fischer C, Plauth A, Wowro SJ, Siems K, Hetterling G, Kliem M, Schroeder FC, Sauer S.J Nat Prod 79(1), 2-12 -
Mediators between education and dental pain: a cross-sectional study to assess the role of dental services utilization. 2016
Full text...Constante HM, Peres MA, Schroeder FC, Bastos JL.Eur J Oral Sci 124(1), 62-7 -
Mating dynamics in a nematode with three sexes and its evolutionary implications. 2015
Full text...Chaudhuri J, Bose N, Tandonnet S, Adams S, Zuco G, Kache V, Parihar M, von Reuss SH, Schroeder FC, Pires-daSilva A.Sci Rep 5, 17676 -
Human GAPDH Is a Target of Aspirin's Primary Metabolite Salicylic Acid and Its Derivatives. 2015
Full text...Choi HW, Tian M, Manohar M, Harraz MM, Park SW, Schroeder FC, Snyder SH, Klessig DF.PloS One 10(11), e0143447 -
Metabolic Interplay between the Asian Citrus Psyllid and Its Profftella Symbiont: An Achilles' Heel of the Citrus Greening Insect Vector. 2015
Full text...Ramsey JS, Johnson RS, Hoki JS, Kruse A, Mahoney J, Hilf ME, Hunter WB, Hall DG, Schroeder FC, MacCoss MJ, Cilia M.PLoS One 10(11), e0140826 -
NeuCode Labeling in Nematodes: Proteomic and Phosphoproteomic Impact of Ascaroside Treatment in Caenorhabditis elegans. 2015
Full text...Rhoads TW, Prasad A, Kwiecien NW, Merrill AE, Zawack K, Westphall MS, Schroeder FC, Kimble J, Coon JJ.Mol Cell Proteomics 14(11), 2922-35 -
Conserved nematode signalling molecules elicit plant defenses and pathogen resistance. 2015
Full text...Manosalva P, Manohar M, von Reuss SH, Chen S, Koch A, Kaplan F, Choe A, Micikas RJ, Wang X, Kogel KH, Sternberg PW, Williamson VM, Schroeder FC, Klessig DF.Nat Commun 6, 7795 -
Identification of multiple salicylic acid-binding proteins using two high throughput screens 2015
Full text...Manohar, M., Tian, M., Moreau, M., Park, S-W., Choi, H.W., Fei, Z., Friso, G., Asif, M., Manosalva, P., von Dahl, C.C., Shi, K., Ma, S., Dinesh-Kumar, S.P., O'Doherty, I., Schroeder, F.C., van Wijk, K.J., and Klessig, D.F.Front. Plant Sci. 5, 777 -
Nematode Signaling Molecules Derived from Multimodular Assembly of Primary Metabolic Building Blocks 2015
Full text...Yim, J.J., Bose, N., Meyer, J.M., Sommer, R.J., and Schroeder, F.C.Org. Lett. 17 (7), 1648–1651 -
Modular Assembly of Primary Metabolic Building Blocks: A Chemical Language in C. elegans 2015
Full text...Schroeder, F.C.Chem. Biol. 22, 7-16 -
Transcriptome analysis of cAMP‐dependent protein kinase A regulated genes reveals the production of the novel natural compound fumipyrrole by Aspergillus fumigatus. 2015
Full text...Macheleidt, J., Scherlach, K., Neuwirth, T., Schmidt-Heck, W., Straßburger, M., Spraker, J., Baccile, J.A., Schroeder, F.C., Keller, N.P., Hertweck, C., Heinekamp, T., and Brakhage, A.A.Mol Microbiol. doi: 10.1111/mmi.12926 -
Comparative Metabolomics Reveals Endogenous Ligands of DAF-12, a Nuclear Hormone Receptor, Regulating C. elegans Development and LifespanCell Metab. 2014
Full text...Mahanti, P., Bose, N., Bethke, A., Judkins, J.C., Wollam, J., Dumas, K.J., Zimmerman, A.M., Campbell, S.L., Hu, P.J., Antebi, A., and Schroeder, F.C.Cell Metab. 19, 73-83 -
Activation of a G protein-coupled receptor by its endogenous ligand triggers the innate immune response of Caenorhabditis elegans 2014
Full text...Zugasti, O., Bose, N.,Squiban, B., Belougne, J., Kurz, L.C., Schroeder, F.C., Pujol, N., and Ewbank, J.J.Nat. Immunol. 15, 833-838 -
A Photocleavable Masked Nuclear-Receptor Ligand Enables Temporal Control of C. elegans Development 2014
Full text...Judkins, J.C., Mahanti, P., Hoffman, J.B., Yim, I., Antebi, A., and Schroeder, F.C.Angew. Chem. Int. Edit. 53, 2110-2113 -
B. subtilis GS67 protects C. elegans from Gram-positive pathogens via fengycin-mediated microbial antagonism 2014
Full text...Iatsenko, I., Yim, J.J., Schroeder, F.C., and Sommer, R.J.Curr. Biol. 24, 2720-2727 -
Chemosensation of Bacterial Secondary Metabolites Modulates Neuroendocrine Signaling and Behavior of C. elegans 2014
Full text...Meisel, J.D., Panda, O., Mahanti, P., Schroeder, F.C., and Kim, D.H.Cell 159, 267-280 -
Endogenous NHR ligands: metabolomics to the rescue 2014
Full text...Bethke, A., and Schroeder, F.C.Aging-US 6, 522-523 -
Males Shorten the Life Span of C. elegans Hermaphrodites via Secreted Compounds 2014
Full text...Maures, T.J., Booth, L.N., Benayoun, B.A., Izrayelit, Y., Schroeder, F.C., and Brunet, A.Science 343, 541-544 -
Natural variation in dauer pheromone production and sensing supports intraspecific competition in nematodes 2014
Full text...Bose, N., Meyer, J.M., Yim, J.J., Mayer, M.G., Markov, G.V., Ogawa, A., Schroeder, F.C., and Sommer, R.J.Curr. Biol. 24, 1536-1541 -
Perturbations in small molecule synthesis uncovers an iron-responsive secondary metabolite network in Aspergillus fumigatus 2014
Full text...Wiemann, P., Lechner, B.E., Baccile, J.A., Velk, T.A., Yin, W-B., Bok, J.W., Pakala, S., Losada, L., Nierman, W.C., Schroeder, F.C., and Keller, N.P.Front. Microbiol. 5, 530 -
Small molecule signaling: encoding biological information in chemical structures. In Pristionchus pacificus - A nematode model for comparative and evolutionary biology 2014
Full text...Schroeder, F.C.(Ralf J. Sommer. Brill, Leiden, NL, ed.) in press -
2D NMR-based metabolomics uncovers interactions between conserved biochemical pathways in the model organism Caenorhabditis elegans 2013
Full text...Izrayelit, Y., Robinette, S.L., Bose, N., von Reuss, S.H. and Schroeder, F.C.ACS Chem. Biol. 8, 314-319 -
A Family of Indoles Regulate Virulence and Shiga Toxin Production in Pathogenic E. coli 2013
Full text...Bommarius, B., Anyanful, A., Izrayelit, Y., Bhatt, S., Cartwright, E., Wang, W., Swimm, A.I., Benian, G.M., Schroeder, F.C. and Kalman, D.PLoS ONE 8, e54456 -
Anthranilate Fluorescence Marks a Calcium-Propagated Necrotic Wave That Promotes Organismal Death in C. elegans 2013
Full text...Coburn, C., Allman, E., Mahanti, P., Benedetto, A., Cabreiro, F., Pincus, Z., Matthijssens, F., Araiz, C., Mandel, A., Vlachos, M., Edwards, S.A., Fischer, G., Davidson, A., Pryor, R.E., Stevens, A., Slack, F.J., Tavernarakis, N., Braeckman, B.P., Schroeder, F.C., Nehrke, K. and Gems, D.PLoS Biol. 11, 1-17 -
Density dependence in Caenorhabditis larval starvation 2013
Full text...Artyukhin, A.B., Schroeder, F.C. and Avery, L.Scientific Reports 3, 2777 -
Homologous NRPS-like gene clusters mediate redundant small-molecule biosynthesis in Aspergillus flavus 2013
Full text...Forseth, R.R., Amaike, S., Schwenk, D., Affeldt, K.J., Hoffmeister, D., Schroeder, F.C. and Keller, N.P.Angew. Chem. Int. Edit. 52, 1590-1594 -
Structural Characterization of Amorfrutins Bound to the Peroxisome Proliferator-Activated Receptor gamma 2013
Full text...de Groot, J.C., Weidner, C., Krausze, J., Kawamoto, K., Schroeder, F.C., Sauer, S. and Bussow, K.J. Med. Chem. 56, 1535-1543 -
Succinylated octopamine ascarosides and a new pathway of biogenic amine metabolism in Caenorhabditis elegans 2013
Full text...Artyukhin, A.B., Yim, J.J., Srinivasan, J., Izrayelit, Y., Bose, N., von Reuss, S.H., Jo, Y., Jordan, J.M., Baugh, L.R., Cheong, M., Sternberg, P.W., Avery, L. and Schroeder, F.C.J. Biol. Chem. 288, 18778-18783 -
Nematode-Trapping Fungi Eavesdrop on Nematode Pheromones 2013
Full text...Hsueh, Y.P., Mahanti, P., Schroeder, F.C. and Sternberg, P.W.Curr. Biol. 23, 83-86 -
Chemical defense of an Asian snake reflects local availability of toxic prey and hatchling diet 2013
Full text...Hutchinson, D.A., Savitzky, A.H., Burghardt, G.M., Nguyen, C., Meinwald, J., Schroeder, F.C. and Mori, A.J. Zool. 289, 270-278 -
Pheromone sensing regulates Caenorhabditis elegans lifespan and stress resistance via the deacetylase SIR-2.1 2013
Full text...Ludewig, A.H., Izrayelit, Y., Park, D., Malik, R.U., Zimmermann, A., Mahanti, P., Fox, B.W., Bethke, A., Doering, F., Riddle, D.L. and Schroeder, F.C.P. Natl. Acad. Sci. USA 110, 5522-5527 -
Ascaroside signaling in C. elegans 2013
Full text...Ludewig, A.H. and Schroeder, F.C.WormBook 1 -
Protein Sets Define Disease States and Predict In Vivo Effects of Drug Treatment 2013
Full text...Meierhofer, D., Weidner, C., Hartmann, L., Mayr, J.A., Han, C.T., Schroeder, F.C. and Sauer, S.Mol. Cell. Proteomics 12, 1965-1979 -
RsmA Regulates Aspergillus fumigatus Gliotoxin Cluster Metabolites Including Cyclo(L-Phe-L-Ser), a Potential New Diagnostic Marker for Invasive Aspergillosis 2013
Full text...Sekonyela, R., Palmer, J.M., Bok, J.W., Jain, S., Berthier, E., Forseth, R., Schroeder, F. and Keller, N.P.PLoS ONE 8, e62591 -
Chemical Detoxification of Small Molecules by Caenorhabditis elegans 2013
Full text...Stupp, G.S., von Reuss, S.H., Izrayelit, Y., Ajredini, R., Schroeder, F.C. and Edison, A.S.ACS Chem. Biol. 8, 309-313 -
Amorfrutin B is an efficient natural peroxisome proliferator-activated receptor gamma (PPAR gamma) agonist with potent glucose-lowering properties 2013
Full text...Weidner, C., Wowro, S.J., Freiwald, A., Kawamoto, K., Witzke, A., Kliem, M., Siems, K., Muller-Kuhrt, L., Schroeder, F.C. and Sauer, S.Diabetologia 56, 1802-1812 -
A Nonribosomal Peptide Synthetase-Derived Iron(III) Complex from the Pathogenic Fungus Aspergillus fumigates 2013
Full text...Yin, W.B., Baccile, J.A., Bok, J.W., Chen, Y.M., Keller, N.P. and Schroeder, F.C.J. Am. Chem. Soc. 135, 2064-2067 -
Complex small-molecule architectures regulate phenotypic plasticity in a nematode 2012
Full text...Bose, N., Ogawa, A., von Reuss, S.H., Yim, J.J., Ragsdale, E.J., Sommer, R.J. and Schroeder, F.C.Angew. Chem-Ger. Edit. 51, 12438-12443 -
Ascaroside signaling is widely conserved among nematodes 2012
Full text...Choe, A., von Reuss, S.H., Kogan, D., Gasser, R.B., Platzer, E.G., Schroeder, F.C. and Sternberg, P.W.Curr. Biol. 22, 772-780 -
Discovery of a novel pharmacological and structural class of gamma secretase modulators derived from the extract of Actaea racemosa 2012
Full text...Findeis, M.A., Schroeder, F., McKee, T.D., Yager, D., Fraering, P.C., Creaser, S.P., Austin, W.F., Clardy, J., Wang, R., Selkoe, D. and Eckman, C.B.Acs. Chem. Neurosci. 3, 941-951 -
Correlating secondary metabolite production with genetic changes using differential analysis of 2D NMR spectra 2012
Full text...Forseth, R.R. and Schroeder, F.C.Method. Mol. Biol. 944, 207-219 -
Chemical investigations of defensive steroid sequestration by the Asian snake Rhabdophis tigrinus 2012
Full text...Hutchinson, D.A., Savitzky, A.H., Mori, A., Burghardt, G.M., Meinwald, J. and Schroeder, F.C.Chemoecology 22, 199-206 -
Targeted metabolomics reveals a male pheromone and sex-specific ascaroside biosynthesis in Caenorhabditis elegans 2012
Full text...Izrayelit, Y., Srinivasan, J., Campbell, S.L., Jo, Y., von Reuss, S.H., Genoff, M.C., Sternberg, P.W. and Schroeder, F.C.ACS Chem. Biol. 7, 1321-1325 -
Interspecific nematode signals regulate dispersal behavior 2012
Full text...Kaplan, F., Alborn, H.T., von Reuss, S.H., Ajredini, R., Ali, J.G., Akyazi, F., Stelinski, L.L., Edison, A.S., Schroeder, F.C. and Teal, P.E.PLoS ONE 7, e38735 -
Steroids as central regulators of organismal development and lifespan 2012
Full text...Lee, S.S. and Schroeder, F.C.PLoS Biol. 10, e1001307 -
Sex-specific mating pheromones in the nematode Panagrellus redividus 2012
Full text...Chose, A., Chuman, T., von Reuss, S.H., Dossey, A.T., Yim, J.J., Ajredini, R., Kolawa, A.A., Kaplan, F., Alborn, H.T., Teal, P.E.A., Schroeder, F.C., Sternberg, Arthur S., and Edison, P.W.P. Natl. Acad. Sci. USA 109, 20949-20954 -
A backup plan for self-protection: S-methylation of holomycin biosynthetic intermediates in Streptomyces clavuligerus 2012
Full text...Li, B., Forseth, R.R., Bowers, A.A., Schroeder, F.C. and Walsh, C.T.Chembiochem 13, 2521-2526 -
Interaction of structure-specific and promiscuous G-protein-coupled receptors mediates small-molecule signaling in Caenorhabditis elegans 2012
Full text...Park, D., O'Doherty, I., Somvanshi, R.K., Bethke, A., Schroeder, F.C., Kumar, U. and Riddle, D.L.P. Natl. Acad. Sci. USA 109, 9917-9922 -
NMR in metabolomics and natural products research: two sides of the same coin 2012
Full text...Robinette, S.L., Bruschweiler, R., Schroeder, F.C. and Edison, A.S.Accounts Chem. Res. 45, 288-297 -
A modular library of small molecule signals regulates social behaviors in Caenorhabditis elegans 2012
Full text...Srinivasan, J., von Reuss, S.H., Bose, N., Zaslaver, A., Mahanti, P., Ho, M.C., O'Doherty, O.G., Edison, A.S., Sternberg, P.W. and Schroeder, F.C.PLoS Biol. 10, e1001237 -
Comparative metabolomics reveals biogenesis of ascarosides, a modular library of small-molecule signals in C. elegans 2012
Full text...von Reuss, S.H., Bose, N., Srinivasan, J., Yim, J.J., Judkins, J.C., Sternberg, P.W. and Schroeder, F.C.J. Am. Chem. Soc. 134, 1817-1824 -
Amorfrutins are potent antidiabetic dietary natural products 2012
Full text...Weidner, C., de Groot, J.C., Prasad, A., Freiwald, A., Quedenau, C., Kliem, M., Witzke, A., Kodelja, V., Han, C.T., Giegold, S., Baumann, M., Klebl, B., Siems, K., Muller-Kuhrt, L., Schurmann, A., Schuler, R., Pfeiffer, A.F.H., Schroeder, F.C., Bussow, K. and Sauer, S.P. Natl. Acad. Sci. USA 109, 7257-7262 -
Hierarchical alignment and full resolution pattern recognition of 2D NMR spectra: Application to nematode chemical ecology 2011
Full text...Robinette, S.L., Ajredini, R., Rasheed, H., Zeinomar, A., Schroeder, F.C., Dossey, A.T. and Edison, A.S.Anal. Chem. 83, 1649-1657 -
Synthesis of caeliferins, elicitors of plant immune responses: accessing lipophilic natural products via cross metathesis 2011
Full text...O'Doherty, I., Yim, J.J., Schmelz, E.A. and Schroeder, F.C.Org. Lett. 13, 5900-5903 -
Ascaroside expression in Caenorhabditis elegans is strongly dependent on diet and developmental stage 2011
Full text...Kaplan, F., Srinivasan, J., Mahanti, P., Ajredini, R., Durak, O., Nimalendran, R., Sternberg, P.W., Teal, P.E.A., Schroeder, F.C., Edison, A.S. and Alborn, H.T.PLoS ONE 6, e17804 -
Biosynthetic Chlorination of the Piperazate Residue in Kutzneride Biosynthesis by KthP 2011
Full text...Jiang, W., Heemstra Jr., J.S., Forseth, R.R., Neumann, C.S., Manaviazar, S., Schroeder, F.C., Hale, K.J. and Walsh, C.T.Biochemistry 50, 6063-6072 -
NMR-spectroscopic analysis of mixtures: from structure to function 2011
Full text...Forseth, R.R. and Schroeder, F.C.Curr. Opin. Chem. Biol. 15, 38-47 -
Identification of cryptic products of the gliotoxin gene cluster using NMR-based comparative metabolomics and a model for gliotoxin biosynthesis 2011
Full text...Forseth, R.R., Fox, E.M., Chung, D., Howlett, B.J., Keller, N.P. and Schroeder, F.C.J. Am. Chem. Soc. 133, 9678-9681 -
2D NMR-spectroscopic screening reveals polyketides in ladybugs 2011
Full text...Deyrup, S.T., Eckman, L.E., McCarthy, P.H., Smedley, S.R., Meinwald, J. and Schroeder, F.C.P. Natl. Acad. Sci. USA 108, 9753-9758 -
Microfluidic chamber arrays for whole-organism behavior-based chemical screening 2011
Full text...Chung, K., Zhan, M., Srinivasan, J., Sternberg, P.W., Gong, E., Schroeder, F.C. and Lu, H.Lab Chip 11, 3689-3697 -
Spirocyclic lignans from Guaiacum (Zygophyllaceae) induce apoptosis in human breast cancer cell lines 2011
Full text...Chavez, K.J., Feng, X., Flanders, J.A., Rodriguez, E. and Schroeder, F.C.J. Nat. Prod. 74, 1293-1297 -
Scents of adolescence: The maturation of the olfactory phenotype in a free-ranging mammal 2011
Full text...Caspers, B.A., Schroeder, F.C., Franke, S. and Voigt, C.C.PLoS ONE 6, e21162 -
Highly alpha-selective hydrolysis of alpha,beta-epoxyalcohols using tetrabutylammonium fluoride 2010
Full text...Mukerjee, P., Abid, M. and Schroeder, F.C.Org. Lett. 12, 3986-3989 -
Insect Natural Products 2010
Full text...Gronquist , M. and Schroeder, F.C.Natural Products Structural Diversity-II Secondary Metabolites: Sources, Structures and Chemical Biology 2, 67-108 -
Small Molecules and Analysis of Complex Mixtures 2010
Full text...Edison, A.S. and Schroeder, F.C.Modern Methods in Natural Products Chemistry 9, 169-196 -
A shortcut to identifying small molecule signals that regulate behavior and development in Caenorhabditis elegans 2009
Full text...Pungaliya, C., Srinivasan, J., Fox, B.W., Malik, R.U., Ludewig, A.H., Sternberg, P.W. and Schroeder, F.C.P. Natl. Acad. Sci. USA 106, 7708-7713 -
Odour-based species recognition in two sympatric species of sac-winged bats (Saccopteryx bilineata, S-leptura): combining chemical analyses, behavioural observations and odour preference tests 2009
Full text...Caspers, B.A., Schroeder, F.C., Franke, S., Streich, W.J. and Voigt, C.C.Behav. Ecol. Sociobiol. 63, 741-749 -
A blend of small molecules regulates both mating and development in Caenorhabditis elegans 2008
Full text...Srinivasan, J., Kaplan, F., Ajredini, R., Zachariah, C., Alborn, H.T., Teal, P.E.A., Malik, R.U., Edison, A.S., Sternberg, P.W. and Schroeder, F.C.Nature 454, 1115-1146 -
NMR-spectroscopic screening of spider venom reveals sulfated nucleosides as major components for the brown recluse and related species 2008
Full text...Schroeder, F.C., Taggi, A.E., Gronquist, M., Malik, R.U., Grant, J.B., Eisner, T. and Meinwald, J.P. Natl. Acad. Sci. USA 105, 14283-14287 -
Identification of indole glucosinolate breakdown products with antifeedant effects on Myzus persicae (green peach aphid) 2008
Full text...Kim, J.H., Lee, B.W., Schroeder, F.C. and Jander, G.Plant J. 54, 1015-1026 -
Maternal provisioning of sequestered defensive steroids by the Asian snake Rhabdophis tigrinus 2008
Full text...Hutchinson, D.A., Savitzky, A.H., Mori, A., Meinwald, J. and Schroeder, F.C.Chemoecology 18, 181-190 -
Defensive chemistry of lycid beetles and of mimetic cerambycid beetles that feed on them 2008
Full text...Eisner, T., Schroeder, F.C., Snyder, N., Grant, J.B., Aneshansley, D.J., Utterback, D., Meinwald, J. and Eisner, M.Chemoecology 18, 109-119 -
Biosynthesis of the thiamin-thiazole in eukaryotes: Identification of a thiazole tautomer intermediate 2008
Full text...Chatterjee, A., Schroeder, F.C., Jurgenson, C.T., Ealick, S.E. and Begley, T.P.J. Am. Chem. Soc. 130, 11394-11398 -
Small-molecule pheromones that control dauer development in Caenorhabditis elegans 2007
Full text...Butcher, R.A., Fujita, M., Schroeder, F.C., and Clardy, J .Nat. Chem. Biol. 3, 420-422 -
Grass roots chemistry: meta-tyrosine, an herbicidal non-protein amino acid 2007
Full text...C. Bertin, L. A. Weston, T. Huang, G. Jander, T. Owens, J. Meinwald, and F. C. SchroederP. Natl. Acad. Sci. USA 43, 16964-16969 -
The identification of bacillaene, the product of the PksX megacomplex in Bacillus subtilis 2007
Full text...Butcher, R.A., Schroeder, F.C., Fischbach, M.A., Walsh, C.T., and Clardy, J.P. Natl. Acad. Sci. USA 104, 1506-1509 -
Dietary sequestration of defensive steroids in nuchal glands of the Asian snake Rhabdophis tigrinus 2007
Full text...Hutchinson, D., Mori, A., Savitzky, A., Burghardt, G., Wu, X., Meinwald, J., and Schroeder, F.C.P. Natl. Acad. Sci. USA 104, 2265-2270 -
Biosynthesis of thiamin thiazole in eukaryotes: Conversion of NAD to an advanced intermediate 2007
Full text...Chatterjee, A., Jurgenson, C.T., Schroeder, F.C., Ealick S.E., and Begley, T.P.J. Am. Chem. Soc. 129, 2914-2922 -
Differential analysis of 2D NMR spectra: New natural products from a pilot-scale fungal extract library 2007
Full text...Schroeder, F.C., Gibson, D.M., Churchill, A.C.L., Wursthorn, E.J., Krasnoff, S.B., and J. ClardyAngew. Chem. Int. Edit. 46, 901-904 -
Identification of Xanthurenic Acid 8-O-β-D-Glucoside and Xanthurenic Acid 8-O-Sulfate as Human Natriuretic Hormones 2007
Full text...Cain, C.D., Schroeder, F.C., Shankel, S.W., Mitchnick, M., Schmertzler, M., and Bricker, N.S.P. Natl. Acad. Sci. USA 104, 17873-17878 -
Synthesis and Reactivity of [(silox)(2)Mo=NR](2)Hg (R = (t)Bu, (t)Amyl; silox = OSi(t)Bu(3)): Unusual Thermal Stability and Ready Nucleophilic Cleavage Rationalized by Electronic Factors 2007
Full text...Rosenfeld, D.C., Wolczanski, P.T., Barakat, K.A., Buda, C., Cundari, T.R., Schroeder, F.C., Lobkovsky, E.B., and Inorg.Chem. 46, 9715-9735 -
An oligomerization approach to generating skeletal diversity 2006
Full text...Spiegel, D.A., Schroeder, F.C., and Schreiber, S.L.J. Am. Chem. Soc. 128, 14766-14767 -
Extending the scope of NMR spectroscopy with microcoil probes 2006
Full text...Schroeder, F.C., and Gronquist, M.Angew. Chem. Int. Edit. 45, 7122-7131 -
Thiamin biosynthesis in eukaryotes: Characterization of the enzyme-bound product of thiazole synthase from Saccharomyces cerevisiae and its implications in thiazole biosynthesis 2006
Full text...Chatterjee, A., Jurgenson, C.T., Schroeder, F.C., Ealick, S.E., and Begley, T.P.J. Am. Chem. Soc. 128, 7158-7159 -
Small molecule signaling in Caenorhabditis elegans 2006
Full text...Schroeder, F.C.ACS Chem. Biol. 1, 198-200 -
Phaeosphaeride A, An inhibitor of STAT3-dependent signaling isolated from an endophytic fungus 2006
Full text...Maloney, K.N., Hao, W., Xu, J., Gibbons, J., Hucul, J., Roll, D., Brady, S.F., Schroeder, F.C., and Clardy, J.Org. Lett. 8, 4067-4070 -
Enzymatic generation of the antimetabolite γ,γ-dichloroaminobutyrate by NRPS and mononuclear iron halogenase action in a streptomycete 2006
Full text...Ueki, M., Galonić, D.P., Vaillancourt, F.H., Garneau-Tsodikova, S., Yeh, E., Vosburg, D.A., Schroeder, F.C., Osada, H., and Walsh, C.T.Chem. Biol. 13, 1183-1191 -
Pinoresinol: a basic lignol of plant origin, appropriated for defensive purposes by a caterpillar 2006
Full text...Schroeder, F.C, Grant, J.B., Weibel, D.B., Smedley, S.R., Bolton, K.L., Meinwald, J., and Eisner, T.P. Natl. Acad. Sci. USA 103, 15497-15501 -
Shunning the night to elude the hunter: diurnal fireflies and the “femmes fatales” 2006
Full text...Gronquist, M., Schroeder, F.C., Ghiradella, H., Hill, D., McCoy, E.M., Meinwald, J., and Eisner, T.Chemoecology 16, 10810-10811 -
Exploring uncharted terrain in nature’s structure space using capillary NMR spectroscopy: 13 steroids from 50 fireflies 2005
Full text...Gronquist, M, Meinwald, J., Eisner, T., and Schroeder, F.C.J. Am. Chem. Soc. 127, 10810-10811 -
The psammaplysenes, specific inhibitors of FOXO1a nuclear export 2005
Full text...Schroeder, F.C., Kau, T.R., Silver, P.A., and Clardy, J.J. Nat. Prod. 68, 574-576 -
A new approach to natural products discovery exemplified by the identification of sulfated nucleosides in spider venom 2004
Taggi, A.E., Meinwald, J., and Schroeder, F.C.J. Am. Chem. Soc. 126, 10364-10369 -
Chiral silylation reagents: Determining configuration via NMR-spectroscopic co-analysis 2004
Full text...Schroeder, F.C., Weibel, D.B., and Meinwald, J.Org. Lett. 6, 3019-3022 -
Defensive ‘flocculent’ emissions in a Tiger moth, Homoeocera stictosoma (Arctiidae, Actiinae) 2003
Full text...Yack, J. E., Conner, W.E., Timbers, T.A., Aiello, A., and Schroeder, F.C.J. Lepid. Soc. 58, 173-177 -
A chemical genetic screen identifies inhibitors of regulated nuclear export of a Forkhead transcription factor in PTEN-deficient tumor cells 2003
Full text...Kau, T.R., Schroeder, F.C., Wojciechowski, C.L., Zhou, J.J., Roberts, T., Clardy, J., Sellers, W.R., and Silver, P.A.Cancer Cell 4, 463-476 -
Isobutylamides of unsaturated fatty acids from Chrysanthemum morifolium associated with host-plant resistance against the Western Flower Thrips 2003
Full text...Tsao, R., Attygalle, A.B., Schroeder, F.C., Marvin, C.H., and McGarvey, B.D.J. Nat. Prod. 66, 1229-1231 -
New silyl ether reagents for the absolute stereochemical determination of secondary alcohols 2003
Full text...Williamson, R.T., Barrios Sosa, A.C., Mitra, A., Seaton, P.J., Weibel, D.B., and Schroeder, F.C.Org. Lett. 5, 1745-1748 -
New non-glycosidic diterpenes from leaves of Stevia rebaudiana 2003
Full text...McGarvey, B.D., Attygalle, A.B., Starratt, A.N., Brandle, J.E., Xiang, B., Schroeder, F.C., and Meinwald, J.J. Nat. Prod. 66, 1395-1398 -
Chemical defense and aposematism: the case of Utetheisa galapagensis 2003
Full text...Roque-Albelo, L., Schroeder, F.C., Conner, W.E., Bezzerides, A., Hoebeke, E.R., Meinwald, J., and Eisner, T.Chemoecology 12, 153-157 -
Synthesis of Mayolene-16 and Mayolene-18: Larval defensive lipids from the European Cabbage Butterfly 2002
Full text...Weibel, D.B., Shevy, L.E., Schroeder, F.C., and Meinwald, J.J. Org. Chem. 67, 5896-5900 -
Mayolenes: Labile defensive lipids from the glandular hairs of a caterpillar (Pieris rapae) 2002
Full text...Smedley, S.R., Schroeder, F.C., Weibel, D.B., Meinwald, J., Lafleur, K.A., Renwick, J.A., Rutowski, R., and Eisner, T.P. Natl. Acad. Sci. USA 99, 6822-6827 -
Hydroquinone: a general phagostimulating pheromone in termites 2002
Full text...Reinhard, J., Lacey, M.J., Ibarra, F., Schroeder, F.C., Kaib, M., and Lenz, M.J. Chem. Ecol. 28, 1-14 -
Synthesis of macrocyclic insect-derived alkaloids 2000
Full text...Farmer, J.J., Schroeder, F.C., and Meinwald, J.Helv. Chim. Acta 83, 2594-2606 -
Production of a cyanogenic secretion by a thyridid caterpillar 2001
Full text...Darling, D.C., Schroeder, F.C., Meinwald, J., Eisner, M., and Eisner, T.Naturwissenschaften 88, 306-309 -
Host recognition by the tobacco hornworm is mediated by a host plant compound 2001
Full text...del Campo, M.L., Miles, C.I., Schroeder, F.C., Mueller, C., Booker, R., and Renwick, J.A.Nature 411, 186-189 -
Chemical defense: bestowal of a nuptial alkaloidal garment by a male moth upon its mate 2000
Full text...Conner, W.E., Boada, R., Schroeder, F.C., Gonzales, A., Meinwald, J., and Eisner, T.P. Natl. Acad. Sci. USA 97, 14406-14411 -
A combinatorial library of macrocyclic polyamines produced by a ladybird beetle 2000
Full text...Schroeder. F.C., Farmer, J.J., Attygalle, A.B., Smedley, S.R., Eisner, T., and Meinwald, J.J. Am. Chem. 122, 3628-3634 -
Chiral silylation reagents for the determination of absolute configuration by NMR spectroscopy 2000
Full text...Weibel, D. B., Walker, T.R., Schroeder, F.C., and Meinwald, J.Org. Lett. 2, 2381-2383 -
Metabolic transformations of acquired lucibufagins by firefly “femmes fatales” 1999
Full text...Gonzales, A., Schroeder, F.C., Attygalle, A.B., Svatos, A., Meinwald, J., and Eisner, T.Chemoecology 9, 105-112 -
Miriamin, a defensive diterpene from the eggs of a land slug (Arion sp.) 1999
Full text...Schroeder, F.C., Gonzalez, A., Eisner, T., and Meinwald, J.P. Natl. Acad. Sci. USA 96, 13620-13525 -
N-Methylquinolinium 2-carboxylate, a defensive betaine from Photuris versicolor fireflies 1999
Full text...Gonzalez, A., Schroeder, F.C., Eisner, T., and Meinwald, J.J. Nat. Prod. 62, 378-380 -
Synthesis of myrmicarin 217, a Pyrrolo[2,1,5-cd]indolizidine from ants 1998
Full text...Schroeder, F.C.Tetrahedron 54, 5259-5264 -
Sex pheromone of female Vine Bud Moth, Theresimima ampellophaga, comprises (2S) butyl-(7Z)-tetradecenoate 1998
Full text...Subchev, M., Harizanov, A., Francke, W., Franke, S., Plass, E., Reckziegel, A., and Schroeder, F.J. Chem. Ecol. 24, 1141-1152 -
Polyazamacrolides from ladybird beetles: Ring-size selective oligomerization 1998
Full text...Schroeder, F.C., Smedley, S.R., Gibbons, L.K., Farmer, J.J., Attygalle, A.B., Eisner, T., and Meinwald, J.. Natl. Acad. Sci. USA 95, 13387-13391 -
Induced chemical defense in plants 1998
Full text...Schroeder, F.C.Angew. Chem. Int. Edit. 37, 1213-1216 -
Psylloborine A, a new dimeric alkaloid from ladybird beetles 1998
Full text...Schroeder, F.C., and Tolasch, T.Tetrahedron 54, 12243-12248 -
Absolute configuration of the polyazamacrolides, macrocyclic polyamines produced by a ladybird beetle 1998
Full text...Schroeder, F.C., Farmer, J.J., Smedley, S.R., Eisner, T., and Meinwald, J.Tetrahedron Lett. 39, 6625-6628 -
Combinatorial chemistry in insects: A library of defensive macrocyclic polyamines 1998
Full text...Schroeder, F.C., Farmer, J.J., Attygalle, A.B., Smedley, S.R., Eisner, T., and Meinwald, J.Science 281, 428-431 -
Cysteine-glutathione disulfide, the sperm-release pheromone of the marine polychaete Nereis succinea (Annelida: Polychaeta) 1998
Full text...Zeeck, E., Müller, C.T., Beckmann, M., Hardege, J.D., Papke, U., Sinnwell, V., Schröder, F.C., and Francke, W.Chemoecology 8, 33-38 -
Mirasorvone: A Masked 20-Ketopregnane from the Defensive Secretion of a Diving Beetle (Thermonectus marmoratus) 1998
Full text...Meinwald, J.,Huang, Q., Vrkoc, J., Herath, K.B., Yang, Z., Schröder, F.C., Attygal, A.B., Iyengar, V.K., Morgan, R.C., and Eisner, T.P. Natl. Acad. Sci. USA 95, 2733-2737 -
Myrmicarin 663: A New Decacyclic Alkaloid from Ants 1997
Full text...Schröder, F.C., Sinnwell, V., Baumann, H., Kaib, M., and Francke, WAngew. Chem. Int. Edit. 36, 77-80 -
Synthesis of (1S,2R,5R)-2-Ethyl-1,5-dimethyl-6,8-dioxabicyclo[3.2.1]octane, the Aggregation Pheromone of Male Beech Bark Beetles Taphrorychus bicolor (Col., Scol.) 1996
Full text...Francke, W., Schröder, F.C., Kohnle, U., and Simon, M.Liebigs Ann. 1523-1527 -
A New Family of Tricyclic Alkaloids from Myrmicaria Ants 1996
Full text...Schröder, F.C., Franke, S., Francke, W., Baumann, H., Kaib, M., Pasteels, J.M., and Daloze, D.Tetrahedron 52, 13539-13546 -
3,4-Epoxy-8-deoxycumambrin B, a Sesquiterpene Lactone from Tanacetum parthenium 1996
Full text...Milbrodt, M., Schröder, F.C., and Wilfried, A.K.Phytochemistry 44, 471-474 -
Myrmicarin 430A: a New Heptacyclic Alkaloid from Myrmicaria Ants 1996
Full text...Schröder, F.C., Baumann, H., Kaib, M., Sinnwell, V., and Francke, W.Chem. Commun. 18, 2139-2140 -
Identification and Synthesis of New Bicyclic Acetals from the Mountain Pine Beetle, Dendroctonus ponderosae Hopkins (Col.: Scol.) 1996
Full text...Francke, W., Schröder, F.C., Philipp, P., Meyer, H., Sinnwell, V., and Gries, G.Bioorgan. Med. Chem. 4, 363-374 -
Semiochemicals in Bark Beetles: New Results, Remarks and Reflections 1995
Full text...Francke, W., Bartels, J., Meyer, H., Schröder, F.C., Kohnle, U., Baader, E., and Vite, J.P.J. Chem. Ecol. 21, 1043-1063 -
The Male Pheromone of the Old House Borer Hylotrupes bajulus (L.) (Coleoptera: Cerambycidae): Identification and Response 1995
Full text...Fettköther, R., Dettner, K., Schröder, F.C., Meyer, H., Francke, W., and Noldt, U.Experientia 51, 270-277 -
New Alkaloids from Ants: Identification and Synthesis of (3R,5S,9R)-3-Butyl-5-(1-oxopropyl)-indolizidine and (3R,5R,9R)-3-Butyl-5-(1-oxopropyl)indolizidine, Constituents of the Poison Gland Secretion in Myrmicaria eumenoides (Hymenoptera, Formicidae) 1995
Full text...Francke, W., Schröder, F.C., Walter, F., Sinnwell, V., Baumann, H., and Kaib, M.Liebigs Ann. Chem. 6, 965-977 -
Synthesis of (3R)-3-Hydroxy-2-hexanone, (2R,3R)-2,3-Hexanediol and (2S,3R)-2,3-Hexanediol, the Male Sex Pheromone of Hylotrupes bajulusand Pyrrhidium sanguineum (Cerambycidae) 1994
Full text...Schröder, F.C., Fettköther, R., Noldt, U., König, W.A., and Francke, W.Liebigs Ann. Chem. 12, 1211-1218
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Arabidopsis Chloroplast Mini-Ribonuclease III Participates in rRNA Maturation and Intron Recycling 2015
Full text...Hotto, A.M., Castandet, B., Gilet, L., Higdon, A., Condon, C., and Stern, D.B.The Plant Cell tpc.114.134452 -
A protein with an inactive pterin-4a-carbinolamine dehydratase domain is required for Rubisco biogenesis in plants 2014
Full text...Feiz, L., Williams-Carrier, R., Belcher, S., Montano, M., Barkan, A, and Stern, D.B.Plant Journal 80, 862-869 -
RNA processing and decay in plastids 2013
Full text...Germain, A., Hotto, A.M., Barkan, A., and Stern, D.B.Wiley Interdisciplinary Reviews: RNA 4, 295-316 -
RNase J participates in a pentatricopeptide repeat protein-mediated 5′ end maturation of chloroplast mRNAs. 2013
Full text...Luro, S., Germain, A., Sharwood, R.E., and Stern, D.B.Nucleic Acids Research 41, 9141-9151 -
A molecular contribution to the assessment of the Tricholoma equestre species complex 2013
Full text...Moukha, S., Ferandon, C., Beroard, E., Guinberteau, J., Castandet, B., Callac, P., Creppy, E., and Barroso, G.Fungal Biology 117, 145-155 -
Arabidopsis chloroplast quantitative editotype 2013
Full text...Ruwe, H., Castandet, B., Schmitz-Linneweber, C., and Stern, D.B.FEBS Lett. 587, 1429-1433 -
The Plant Science Decadal Vision: Response to the Martin Commentary 2013
Full text...Stern, D., and MacKenzie, S.Plant Cell 25, 4775-4776 -
Ribulose-1,5-bis-phosphate carboxylase/oxygenase accumulation factor1 is required for holoenzyme assembly in maize 2012
Full text...Feiz, L., Williams-Carrier, R., Wostrikoff, K., Belcher, S., Barkan, A., and Stern, D.B.Plant Cell 24, 3435-3446 -
Ribonuclease II preserves chloroplast RNA homeostasis by increasing mRNA decay rates, and cooperates with polynucleotide phosphorylase in 3′ end maturation 2012
Full text...Germain, A., Kim, S.H., Gutierrez, R., and Stern, D.B.Plant J. 72, 960-971 -
Plastid non-coding RNAs: emerging candidates for gene regulation 2012
Full text...Hotto , A.M., Germain, A., and Stern, D.B.Trends Plant Sci. 17, 737-744 -
Ectopic expression of Rubisco subunits in maize mesophyll cells does not overcome barriers to cell type-specific accumulation. 2012
Full text...Wostrikoff, K., Clark, A., Sato, S., Clemente, T., and Stern, D.Plant Physiology 160, 419-432 -
Overaccumulation of the chloroplast antisense RNA AS5 is correlated with decreased abundance of 5S rRNA in vivo and inefficient 5S rRNA maturation in vitro. 2011
Full text...Sharwood, R.E., Hotto, A.M., Bollenbach, T.J., and Stern, D.B.RNA 17, 230-243 -
Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA 2011
Full text...Sharwood, R.E., Halpert, M., Luro, S., Schuster, G., and Stern, D.B.RNA 17, 2165-2176 -
Unexpected diversity of chloroplast noncoding RNAs as revealed by deep sequencing of the Arabidopsis transcriptome G3 2011
Full text...Hotto, A.M., Schmitz, R.J., Fei, Z., Ecker, J.E., and Stern, D.B.G3 (Bethesda) 1(7), 559–570 -
Mutational analysis of Arabidopsis chloroplast polynucleotide phosphorylase reveals roles for both RNase PH core domains in polyadenylation, RNA 3′-end maturation and intron degradation 2011
Full text...Germain, A., Herlich, S., Larom, S., Kim, S.H., Schuster, G., and Stern, D.B.Plant J. 67, 381-394 -
Differential replication of two chloroplast genome forms in heteroplasmic Chlamydomonas reinhardtii gametes contributes to alternative inheritance patterns. 2010
Full text...Nishimura, Y., and Stern, D.B.Genetics 185, 1167-1181 -
MRL1, a Conserved Pentatricopeptide Repeat Protein, Is Required for Stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis 2010
Full text...Johnson, X., Wostrikoff, K., Finazzi, G., Kuras, R., Schwarz, C., Bujaldon, S., Nickelsen, J., Stern, D.B., Wollman, F.A., and Vallon, O.Plant Cell 22, 234-248 -
Overexpression of a natural chloroplast-encoded antisense RNA in tobacco destabilizes 5S rRNA and retards plant growth 2010
Full text...Hotto, A.M., Huston, Z.E., and Stern, D.B., 10, 213. 10, 213 -
Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae) 2010
Full text...Alverson, A.J., Wei, X.X., Rice, D.W., Stern, D.B., Barry, K., and Palmer, J.D.Molecular Biology and Evolution 27, 1436-1448 -
Transgenic maize lines with cell-type specific expression of fluorescent proteins in plastids 2010
Full text...Sattarzadeh, A., Fuller, J., Moguel, S., Wostrikoff, K., Sato, S., Covshoff, S., Clemente, T., Hanson, M., and Stern, D.B.Plant Biotechnology Journal 8, 112-125 -
Developmental and cell type characterization of bundle sheath and mesophyll chloroplast transcript abundance in maize 2010
Full text...Sharpe, R.M., Mahajan, A., Takacs, E.M., Stern, D.B,. and Cahoon, A.B.Curr. Genet. 57(2), 89-102 -
Chloroplast RNA metabolism 2010
Full text...Stern, D.B., Goldschmidt-Clermont, M., and Hanson, M.R.Annu. Rev. Plant Biol. 61, 125-155 -
Use of Illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy Mutator lines of maize 2010
Full text...Williams-Carrier, R., Stiffler, N., Belcher, S., Kroeger, T., Stern, D.B., Monde, R.A., Coalter, R., and Barkan, A.Plant J. 6, 167-177 -
The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis 2009
Full text...Bollenbach, T.J., Sharwood, R.E., Gutierrez, R., Lerbs-Mache, S., and Stern, D.B.Plant Molecular Biology 69, 541-552 -
Mating and tetrad separation of Chlamydomonas reinhardtii for genetic analysis 2009
Full text...Jiang, X., and Stern, D.J. Vis. Exp. 30, 1274 -
Mitochondria and Chloroplasts 2009
Full text...Newton, K.J., Stern, D.B., and Gabay-Laughnan, S.In Handbook of Maize (Bennetzen, J.L. and Hake, S.C. eds), 0: Springer -
Abnormal physiological and molecular mutant phenotypes link chloroplast polynucleotide phosphorylase to the phosphorus deprivation response in Arabidopsis 2009
Full text...Marchive, C., Yehudai-Resheff, S., Germain, A., Fei, Z.J., Jiang, X.S., Judkins, J., Wu, H., Fernie, A.R., Fait, A., and Stern, D.B.Plant Physiology 151, 905-924 -
Insect-machine interface based neurocybernetics 2009
Full text...Bozkurt, A., Gilmour, R.F., Sinha, A., Stern, D., and Lal, A.IEEE T. Bio-Med. Eng. 56, 1727-1733 -
RNA polyadenylation and decay in mitochondria and chloroplasts 2009
Full text...Schuster, G., and Stern, D.Prog. Mol. Biol. Transl. 85, 393-422 -
Polyadenylation in Arabidopsis and Chlamydomonas organelles: the input of nucleotidyltransferases, poly(A) polymerases and polynucleotide phosphorylase 2009
Full text...Zimmer, S.L., Schein, A., Zipor, G., Stern, D.B., and Schuster, G.Plant J. 59, 88-99 -
Organellar and metabolic processes 2008
Full text...Stern, D.B.In The Chlamydomonas Sourcebook (Stern, D.B. ed.), Oxford 0: Elsevier -
Nuclear, chloroplast, and mitochondrial transcript abundance along a maize leaf developmental gradient 2008
Full text...Cahoon, A.B., Takacs, E.M., Sharpe, R.M., and Stern, D.B.Plant Mol. Biol. 66, 33-46 -
Genome-based analysis of Chlamydomonas reinhardtii exoribonucleases and poly(A) polymerases predicts unexpected organellar and exosomal features 2008
Full text...Zimmer, S.L., Fei, Z.J., and Stern, D.B.Genetics 179, 125-136 -
Integration of chloroplast nucleic acid metabolism into the phosphate deprivation response in Chlamydomonas reinhardtii 2007
Full text...Yehudai-Resheff, S., Zimmer, S.L., Komine, Y., Stern, D.B.Plant Cell 19, 1023-1038 -
Rubisco large subunit translation is autoregulated in response to its assembly state in tobacco chloroplasts 2007
Full text...Wostrikoff, K., and Stern, D.B.P. Natl. Acad. Sci. U S A 104, 6466-6471 -
The evolution of key animal and plant functions is revealed by analysis of the Chlamydomonas genome. 2007
Full text...Merchant, S. S., Prochnik, S. E., Vallon, O., Harris, E. H., Karpowicz, S. J., Witman, G. B., … Maréchal-Drouard, L.Science 318, 245-250 -
Nuclear Suppressors Define Three Factors that Participate in Both 5’ and 3’ End Processing of mRNAs in Chlamydomonas chloroplasts 2006
Full text...Rymarquis, L.A., Higgs, D.C., and Stern, D.B.Plant J. 46, 448-461 -
Adaptive Evolution of Chloroplast Genome Structure Inferred Using a Parametric Bootstrap Approach 2006
Full text...Cui, L., Leebens-Mack, J., Wang, L.S., Tang, J., Rymarquis, L., Stern, D.B., and dePamphilis, C.W.BMC Evol. Biol. 6, 13 -
Chlamydomonas reinhardtii Encodes a Single sigma70-like Factor Which Likely Functions in Chloroplast Transcription 2006
Full text...Bohne, A.V., Ihrimovitch, V., Weihe, A., and Stern, D.B.Curr. Genet. 49, 333-340 -
The sulfur acclimation SAC3 kinase is required for chloroplast transcriptional repression under sulfur limitation inChlamydomonas reinhardtii 2006
Full text...Irihimovitch, V., and Stern, D.B.P. Natl. Acad. Sci. U S A 103, 7911-7916 -
Beyond Complementation: Map-Based Cloning in Chlamydomonas reinhardtii 2005
Full text...Rymarquis, L.A., Handley, J.M., Thomas, M., and Stern, D.B.Plant Physiology 137, 557-566 -
A Spontaneous tRNA Suppressor of a Mutation in the Chlamydomonas reinhardtii Nuclear MCD1 Gene Required for Stability of the Chloroplast petD mRNA 2005
Full text...Murakami, S., Kuehnle, K., and Stern, D.B.Nucleic Acids Research 33, 3372-3380 -
Microarray Analysis Confirms the Specificity of a Chlamydomonas reinhardtii Chloroplast RNA Stability Mutant 2005
Full text...Erickson, B., Stern, D.B., and Higgs, D.CPlant Physiology 137, 534-544 -
A Proposed Mechanism for the Inhibitory Effects of Oxidative Stress on Rubisco Assembly and Its Subunit Expression 2005
Full text...Cohen, I., Knopf, J.A., Irihimovitch, V., and Shapira, M.Plant Physiology 137, 738-746 -
RNR1, a 3’-5’ Exoribonuclease Belonging to the RNR Superfamily, Catalyzes 3’ Maturation of Chloroplast Ribosomal RNAs in Arabidopsis thaliana 2005
Full text...Bollenbach, T.J., Lange, H., Gutierrez, R., Stern, D.B., and Gagliardi, D.Nucleic Acids Research 33, 2751-2763 -
Genetics and Genomics of Chloroplast Biogenesis: Maize as a Model System 2004
Full text...Stern, D.B., Hanson, M.R., and Barkan, A.Trends in Plant Science 9, 293-301 -
Antisense Transcript and RNA Processing Alterations Suppress Instability of Polyadenylated mRNA in Chlamydomonas chloroplasts 2004
Full text...Nishimura, Y., Kikis, E.A., Zimmer, S.L., Komine, Y., and Stern, D.B.Plant Cell 16, 2849-2869
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Development of an in vitro propagation method for the classified New York State-threatened native species Agrimonia rostellata 2015
Full text...Van Eck, J., Keen, P., and Nuzzo, V.Native Plants J 16, 227-233 -
A cascade of arabinosyltransferases controls shoot meristem size in tomato 2015
Full text...Xu, C., Liberatore, K.L., MacAlister, C.A., Huang, Z., Chu, Y.H., Jiang, K., Brooks, C., Ogawa-Ohnishi, M., Xiong, G., Pauly, M., Van Eck, .J, Matsubayashi, Y., van der Knaap, E., Lippman, Z.B.Nat Genets 47, 784-792 -
Efficient gene editing in tomato in the first Generation using the clustered regularly interspaced short palindromic repeats/CRISPR-associated9 system. 2014
Full text...Brooks, C., Nekrasov, V., Lippman, Z.B., and Van Eck, J.Plant Physiology 166, 1292-1297 -
A snapshot of the emerging tomato genome sequence 2009
Full text...The Tomato Genome Consortium.The Plant Genome 2, 78-92 -
The Tomato Sequencing Project, the First Cornerstone of the International Solanaceae Project (SOL) 2005
Full text...Mueller, L. A., Tanksley, S.D., Giovannoni, J., Van Eck, J., Stack, S., Choi, D., Kim, B.D., Chen, M., Cheng, Z., Li, C., Ling, H., Xue, Y., Seymour, G., Bishop, G., Bryan, G., Sharma, R., Khurana, J., Tyagi, A., Chattopadhyay, D., Singh, N.K., Stiekema, W., Lindhout, P., Jesse, T., Lankhorst, R.K., Bouzayen, M., Shibata, D., Tabata, S., Granell, A., Botella, M.A., Giuliano, G., Frusciante, L., Causse, M., and Zamir, D.Comparative and Functional Genomics 6, 153-158 -
Genetic Control and Comparative Genomic Analysis of Flowering Time in Setaria (Poaceae) 2013
Full text...Mauro-Herrera, M., Wang, X., Barbier, H., Brutnell, T.P., Devos, K.M., and Doust, A.N.G3 (Bethesda) 3(2), 283–295 -
actors influencing plant regeneration from seedling explants of Hairy nightshade (Solanum sarrachoides) 2012
Full text...Ju, H.J., Van Eck, J., and Gray, S.M.Plant Cell, Tissue and Organ Culture 108, 121-128 -
The Or gene enhances carotenoid accumulation and stability during post-harvest storage of potato tubers 2012
Full text...Li, L., Yang, Y., Xu, Q., Owsiany, K., Welsch, R., Chitchumroonchokchai, C., Lu, S., Van Eck, J., Deng, X.X., Failla, M., and Thannhauser, T.W.Molecular Plant 5, 339-352 -
Engineering virus resistance using a modified potato gene 2011
Full text...Cavatorta, J., Perez, K.W., Gray, S.M., Van Eck, J., Yeam, I., and Jahn, M.Plant Biotechnol. J. 9, 1014-1021 -
Setaria viridis: a model for C4 photosynthesis 2010
Full text...Brutnell, T.P., Wang, L., Swartwood, K., Goldschmidt, A., Jackson, D., Zhu, X.G., Kellogg, E., and Van Eck, J.Plant Cell 22, 2537-2544 -
Modulation of carotenoid accumulation in transgenic potato by inducing chromoplast formation with enhanced sink strength 2010
Full text...Van Eck, J., Zhou, X., Lu, S., and Li, L.Methods Mol. Biol. 643, 77-93 -
Continued expression of plant-made vaccines following long-term cryopreservation of antigen-expressing tobacco cell cultures 2009
Full text...Van Eck, J., and Keen, P.Vitro Cell. Dev-Pl. 45, 750-757 -
Effect of the cauliflower Or transgene on carotenoid accumulation and chromoplast formation in transgenic potato tubers 2008
Full text...Lopez, A.B., Van Eck, J., Conlin, B.J., Paolillo, D.J., O'Neill , J., and Li, L.J. Exp. Bot. 59, 213-223 -
Use of the cauliflower Or gene for improving crop nutritional quality 2008
Full text...Zhou, X., Van Eck, J., and Li, L.Biotechnology Annual Review 14, 171-190 -
Tomato 2007
Full text...Labate, A., Grandillo, S., Fulton, T., Muños, S., Caicedo, A.L., Peralta, I., Ji, Y., Chetelat, R.T., Scott, J.W., Gonzalo, M.J., Francis, D., Yang, W., van der Knaap, E., Baldo, A.M., Smith-White, B., Mueller, L.A., Prince, J.P., Blanchard, N.E., Storey, D.B., Stevens, M.R., Robbins, M.D., Wang, J.-F., Liedl, B.E., O’Connell, M.A., Stommel, J.R., Aoki, K., Iijima, Y., Slade, A.J., Hurst, S.R., Loeffler, D., Steine, M.N., Vafeados, D., McGuire, C., Freeman, C., Amen, A., Goodstal, J., Facciotti, D., VanEck, J., and Causs, M.Genome Mapping and Molecular Breeding in Plants 5,Vegetables. (C Kole ed.), Springer-Verlag, Berlin Heidelberg New York, pp 1: 131 -
Tomato Transformation: Nuclear and Chloroplast Genomes 2004
Full text...Van Eck, J., Walmsey, A.M., and Daneill, H.Transgenic Crops of the World: Essential Protocols 405-423 -
Organogenesis from Transformed Tomato Explants 2004
Full text...Frary, A., and Van Eck, J.Transgenic Plants: Methods and Protocols 286, 141-150 -
Metabolomics of plant saponins: Bioprospecting triterpene glycoside diversity with respect to mammalian cell targets 2002
Full text...Joshi, L., Van Eck, J.M., Mayo, K., Di Silvestro, R., Blake (Nieto), M.E., Ganapathi, T., Haridas, V., Gutterman, J.U., and Arntzen, C.J.OMICS: A Journal of Integrative Biology 6, 235-246 -
A new class of regulatory genes underlying the cause of pear-shaped tomato fruit 2002
Full text...Liu, J., Van Eck, J., Cong, B., and Tanksley, S.D.P. Natl. Acad. Sci. U S A 99, 13302-13306 -
Transgenic Gladiolus 2001
Full text...Kamo, K., Roh, M., Blowers, A., Smith, F., and Van Eck, J.P. S. Bajaj (ed.). Biotechnology in Agriculture and Forestry 48, 155-170 -
Agrobacterium-mediated transformation of embryogenic cell suspensions of the banana cultivar Rasthali (AAB) 2001
Full text...Ganapathi, T.R., Higgs, N.S., Balint-Kurti, P.J., Arntzen, C.J., May, G.D., and Van Eck, J.Plant Cell Reports 20, 157-162
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