Publications – Zhangjun Fei

Transcriptional responses of the Trichoplusia ni midgut to oral infection by the baculovirus Autographa californica Multiple Nucleopolyhedrovirus
2019.
Shrestha, A., Bao, K., Chen, W., Wang, P., Fei, Zhangjun, Blissard, Gary W.
Journal of Virology.
:
Genome-wide association analysis identifies a natural variation in basic helix-loop-helix transcription factor regulating ascorbate biosynthesis via D-mannose/L-galactose pathway in tomato
2019.
Li, W., Ai, G., Li, C., Liu, G., Chen, W., Wang, B., Wang, W., Lu, Y., Zhang, J., Li, H., Ouyang, B.…
PLOS Genetics.
15
:
Genome-wide identification of genes encoding putative secreted E3 ubiquitin ligases and functional characterization of PbRING1 in the biotrophic protist Plasmodiophora brassicae
2019.
Yu, F., Wang, S., Zhang, W., Tang, J., Wang, H., Yu, L., Zhang, X., Fei, Zhangjun, Li, J.
Current Genetics.
:
1–11
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
2019.
Gao, L., Gonda, I., Sun, H., Ma, Q., Bao, K., Tieman, D., Burzynski-Chang, E., Fish, T., Stromberg, …
Nature Genetics.
:
1546–1718
Transcriptome-based identification and validation of reference genes for plant-bacteria interaction studies using Nicotiana benthamiana
2019.
Pombo, M.A., Ramos, R.N., Zheng, Y., Fei, Zhangjun, Martin, Gregory B., Rosli, H.G.
Scientific Reports.
9
:
Plant Genome Editing Database (PGED): A Call for Submission of Information about Genome-Edited Plant Mutants
2019.
Zheng,Y., Zhang, N., Martin, Gregory B., Fei, Zhangjun
Molecular Plant.
12
:
127–129
A high‐quality chromosome‐level genome assembly of a generalist herbivore, Trichoplusia ni
2018.
Chen, W., Yang, X., Tetreau, G., Song, X., Coutu, C., Hegedus, D., Blissard, Gary, Fei, Zhangjun, Wa…
Molecular Ecology Resources.
19
:
485–496
Plant lncRNAs are enriched in and move systemically through the phloem in response to phosphate deficiency
2018.
Zhang, Z., Zheng, Y., Ham, B., Zhang, S., Fei, Zhangjun, Lucas, W.J.
Journal of Integrative Plant Biology.
:
Transcriptomic and functional analysis of cucumber (Cucumis sativus L.) fruit phloem during early development
2018.
Sui, X., Nie, J., Li, X., Scanlon, M.J., Zhang, C., Zheng, Y., Ma, S., Shan, N., Fei, Zhangjun, Turg…
The Plant Journal.
:
Global Analysis of Baculovirus Autographa californica Multiple Nucleopolyhedrovirus Gene Expression in the Midgut of the Lepidopteran Host Trichoplusia ni
2018.
Shrestha, A., Bao, K., Chen, Y., Chen, W., Wang, P., Fei, Zhangjun and Blissard, Gary
Journal of Virology.
:
Tomato stigma exsertion induced by high temperature is associated with the jasmonate signalling pathway
2018.
Pan, C., Yang, D., Zhao, X., Jiao, C., Yan, Y., Lamin‐Samu, A.T., Wang, Q., Xu, X., Fei, Zhangjun …
Plant, Cell and Environment.
:
Global Analysis of Baculovirus Autographa californica Multiple Nucleopolyhedrovirus Gene Expression in the Midgut of the Lepidopteran Host Trichoplusia ni
2018.
Shrestha, A., Bao, K., Chen, Y., Chen, W., Wang, P., Fei, Zhangjun and Blissard, G.W.
Journal of Virology.
92
:
Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
2018.
Lü, P., Yu, S., Zhu, N., Chen, Y., Zhou, B., Pan, Y., Tzeng, D., Fabi, J.P., Argyris, J., Garcia-M…
Nature Plants.
4
:
784–791
Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement
2018.
Wu, S,, Lau, K.H., Cao, Q., Hamilton, J.P., Sun, H., Zhou, C., Eserman, L., Gemenet, D.C., Olukolu, …
Nature Communications.
9
:
Transcriptomic analysis of sweet potato under dehydration stress identifies candidate genes for drought tolerance
2018.
Lau, K.H., Herrera, M.R., Crisovan, E., Wu, S., Fei, Zhangjun, Khan, M.A., Buell, R.C., Gemenet, D.C…
Plant Direct.
:
1–13
MaMADS2 repression in banana fruits modifies hormone synthesis and signalling pathways prior to climacteric stage
2018.
Yakir, E., Fei, Zhangjun, Sela, N., Xu, Y., Singh, V., Dagar, A., Joshi, J.R., Müller, M., Munné-…
BMC Plant Biology.
18
:
1471–2229
A high‐quality chromosome‐level genome assembly of a generalist herbivore, Trichoplusia ni
2018.
Chen, W, Yang, X., Tetreau, G., Song, X., Coutu, C. Hegedus, D., Blissard, G., Fei, Zhangjun and Wan…
Molecular Ecology Resources.
:
Morphological dissection and cellular and transcriptome characterizations of bamboo pith cavity formation reveal a pivotal role of genes related to programmed cell death
2018.
Guo, L., Sun, X., Li, Z., Wang, Y., Fei, Zhangjun, Jiao, J., Feng, J., Cui, D., Feng, X., Ding, Y., …
Plant Biotechnology Journal.
:
Ectopic expression of ORANGE promotes carotenoid accumulation and fruit development in tomato
2018.
Yazdani, M., Sun, Z., Yuan, H., Zeng, S., Thannhauser, T. W., Vrebalov, J., Ma, Q., Xu, Y., Fei, Zha…
Plant Biotechnology Journal.
:
Elucidation of the Mechanisms of Long-Distance mRNA Movement in a Nicotiana benthamiana /Tomato Heterograft System
2018.
Xia, C., Zheng, Y., Huang, J., Zhou, X., Li, R., Zha, M., Wang, S., Huang, Z., Lan, H., Turgeon, R.,…
Plant Physiology.
177
:
745–758
Tecia solanivora infestation increases tuber starch accumulation inPastusa Suprema potatoes
2018.
Kumar, P., Garrido, E., Zhao, K., Zheng, Y., Alseekh, S., Vargas-Ortiz, E., Fernie, A. R., Fei, Zhan…
Journal of Integrative Plant Biology.
:
Maternal Inheritance of a Single Somatic Animal Cell Displayed by the Bacteriocyte in the Whitefly Bemisia tabaci
2018.
Luan, J., Sun, X., Fei, Zhangjun, Douglas, Angela E.
Current Biology.
28
:
459–465.e3
The Secretome and N-Glycosylation Profiles of the Charophycean Green Alga, Penium margaritaceum, Resemble Those of Embryophytes
2018.
Ruiz-May, E., Sorensen, Iben, Fei, Zhangjun, Zhang, Sheng, Domozych, D. S., Rose, Jocelyn
Proteomes.
6
:
14–14
Construction of a genome-anchored, high-density genetic map for melon (Cucumis melo L.) and identification of Fusarium oxysporum f. sp. melonis race 1 resistance QTL
2018.
Branham, S. E., Levi, A., Katawczik, M., Fei, Zhangjun, Wechter, W. P.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik.
131
:
829–837
Differential metabolism of L–phenylalanine in the formation of aromatic volatiles in melon (Cucumis melo L.) fruit
2018.
Gonda, I., Davidovich-Rikanati, R., Bar, E., Lev, S., Jhirad, P., Meshulam, Y., Wissotsky, G., Portn…
Phytochemistry.
148
:
122–131
Deciphering Genetic Factors that Determine Melon Fruit-Quality Traits Using RNA-Seq-Based High-Resolution QTL and eQTL Mapping
2018.
Galpaz, N., Gonda, I., Shem-Tov, D., Barad, O., Tzuri, G., Lev, S., Fei, Zhangjun, Xu, Y., Lombardi,…
The Plant Journal.
94
:
169–191
High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening
2018.
Shinozaki, Y., Nicolas, P., Fernandez-Pozo, N., Ma, Q., Evanich, D. J., Shi, Y., Xu, Y., Zheng, Y., …
Nature Communications.
9
:
Comparative transcriptome analysis reveals networks of genes activated in the whitefly, Bemisia tabaci when fed on tomato plants infected with Tomato yellow leaf curl virus
2018.
Hasegawa, D. K., Chen, W., Zheng, Y., Kaur, N., Wintermantel, W. M., Simmons, A. M., Fei, Zhangjun, …
Virology.
513
:
52–64
The complete mitochondrial genome sequence of spinach, Spinacia oleracea L
2017.
Cai, X., Jiao, C., Sun, H., Wang, X., Xu, C., Fei, Zhangjun, Wang, Q.
MITOCHONDRIAL DNA PART B-RESOURCES.
2
:
339–340
The pomegranate ( Punica granatum L.) genome provides insights into fruit quality and ovule developmental biology
2017.
Yuan, Z., Fang, Y., Zhang, T., Fei, Zhangjun, Han, F., Liu, C., Liu, M., Xiao, W., Zhang, W., Wu, S.…
Plant Biotechnology Journal.
16
:
1363–1374
Potato leafroll virus alters small RNA production in its aphid vector during plant viral infection to promote virus dispersal
2017.
Wilson, J., Pinheiro, P., Xu, Y., Zheng, Y., Rebelo, A. R., Fattahalhosseini, S., Kruse, A., Dos Sil…
PHYTOPATHOLOGY.
107
:
206–207
The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ring-spot virus resistance locus
2017.
Wu, S., Shamimuzzaman, M., Sun, H., Salse, J., Sui, X., Wilder, A., Wu, Z., Levi, A., Xu, Y., Ling, …
The Plant Journal.
92
:
963–975
TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton
2017.
Cox, K. L., Meng, F., Wilkins, K. E., Li, F., Wang, P., Booher, N. J., Carpenter, S. CD, Chen, L. Q.…
Nature Communications.
8
:
15588–15588
Host-secreted antimicrobial peptide enforces symbiotic selectivity in Medicago truncatula
2017.
Wang, Q., Yang, S., Liu, J., Terecskei, K., Abrahám, E., Gombár, A., Domonkos, A., Szucs, A., Kör…
Proceedings of the National Academy of Sciences.
114
:
6854–6859
Molecular and Biological Characterization of Tomato mottle mosaic virus and Development of RT-PCR Detection
2017.
Sui, X., Zheng, Y., Li, R., Padmanabhan, C., Tian, T., Deborah, G. H., Keinath, A. P., Fei, Zhangjun…
Plant Disease.
101
:
704–711
Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant
2017.
Omidvar, V., Mohorianu, I., Dalmay, T., Zheng, Y., Fei, Zhangjun, Pucci, A., Mazzucato, A., Večeřo…
PLOS One.
12
:
e0170715–e0170715
Decreased sorbitol synthesis leads to abnormal stamen development and reduced pollen tube growth via an MYB transcription factor, MdMYB39L, in apple ( Malus domestica )
2017.
Meng, D., He, M., Bai, Y., Xu, H., Dandekar, A. M., Fei, Zhangjun, Cheng, L.
New Phytologist.
217
:
641–656
Next-generation sequencing-based QTL mapping for unravelling causative genes associated with melon fruit quality traits
2017.
Portnoy, V., Gonda, I., Galpaz, N., Tzuri, G., Lev, S., Kenigswald, M., Fei, Zhangjun, Barad, O., Ha…
II INTERNATIONAL SYMPOSIUM ON TOMATO DISEASES.
1151
:
9–16
Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes
2017.
Sun, H., Wu, S., Zhang, G., Jiao, C., Guo, S., Ren, Y., Zhang, J., Zhang, H., Gong, G., Jia, Z., Zha…
Molecular Plant.
10
:
1293–1306
Diversity, Distribution, and Evolution of Tomato Viruses in China Uncovered by Small RNA Sequencing
2017.
Xu, C., Sun, X., Taylor, A., Jiao, C., Xu, Y., Cai, X., Wang, X., Ge, C., Pan, G., Wang, Q., Fei, Zh…
Journal of Virology.
91
:
e00173-17–e00173-17
Loss-of-function mutation of the calcium sensor CBL1 increases aluminum sensitivity in Arabidopsis
2017.
Ligaba-Osena, A., Fei, Zhangjun, Liu, J., Xu, Y., Shaff, J., Lee, S. C., Luan, S., Kudla, J., Kochia…
New Phytologist.
214
:
830–841
Using Small RNA-seq Data to Detect siRNA Duplexes Induced by Plant Viruses
2017.
Niu, X., Sun, Y., Chen, Z., Li, R., Padmanabhan, C., Ruan, J., Kreuze, J. F., Ling, K. S., Fei, Zhan…
Genes (Basel).
8
:
163–163
VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs
2017.
Zheng, Y., Gao, S., Padmanabhan, C., Li, R., Galvez, M., Gutierrez, D., Fuentes, S., Ling, K. S., Kr…
Virology.
500
:
130–138
Comprehensive transcriptome analyses reveal tomato plant responses to tobacco rattle virus-based gene silencing vectors
2017.
Zheng, Y., Ding, B., Fei, Zhangjun, Wang, Y.
Nature Scientific Reports.
7
:
Use of RNA-seq data to identify and validate RT-qPCR reference genes for studying the tomato-Pseudomonas pathosystem
2017.
Pombo, M. A., Zheng, Y., Fei, Zhangjun, Martin, Gregory B., Rosli, H. G.
Nature Scientific Reports.
7
:
44905–44905
Transcriptome analysis of the whitefly, Bemisia tabaci MEAM1 during feeding on tomato infected with the crinivirus, Tomato chlorosis virus, identifies a temporal shift in gene expression and differential regulation of novel orphan genes
2017.
Kaur, N., Chen, W., Zheng, Y., Hasegawa, D. K., Ling, K. S., Fei, Zhangjun, Wintermantel, W. M.
BMC Genomics.
18
:
Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions
2017.
Xu, C., Jiao, C., Sun, H., Cai, X., Wang, X., Ge, C., Zheng, Y., Liu, W., Sun, X., Xu, Y., Deng, J.,…
Nature Communications.
8
:
15275–15275
Cellular and molecular characterizations of a slow-growth variant provide insights into the fast growth of bamboo
2017.
Wei, Q., Jiao, C., Ding, Y., Gao, S., Guo, L., Chen, M., Hu, P., Xia, S., Ren, G., Fei, Zhangjun
Tree Physiology.
38
:
1–14
Comprehensive Transcriptome Analyses Reveal that Potato Spindle Tuber Viroid Triggers Genome-Wide Changes in Alternative Splicing, Inducible trans -Acting Activity of Phased Secondary Small Interfering RNAs, and Immune Responses
2017.
Zheng, Y., Wang, Y., Ding, B., Fei, Zhangjun
Journal of Virology.
91
:
e00247-17–e00247-17
Exploring key cellular processes and candidate genes regulating the primary thickening growth of Moso underground shoots
2017.
Wei, Q., Jiao, C., Guo, L., Ding, Y., Cao, J., Feng, J., Dong, X., Mao, L., Sun, H., Yu, F., Yang, G…
New Phytologist.
214
:
81–96
Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle-Associated Genes
2017.
Tafolla-Arellano, J. C., Zheng, Y., Sun, H., Jiao, C., Ruiz-May, E., Hernandez-Onate, M. A., Gonzale…
Nature Scientific Reports.
7
:
46163–46163
Identification and expression profiling of microRNAs involved in the stigma exsertion under high-temperature stress in tomato
2017.
Pan, C., Ye, L., Zheng, Y., Wang, Y., Yang, D., Liu, X., Chen, L., Zhang, Y., Fei, Zhangjun, Lu, G.
BMC Genomics.
18
:
Distinct Mechanisms of the ORANGE Protein in Controlling Carotenoid Flux
2017.
Chayut, N., Yuan, H., Ohali, S., Meir, A., Sa ar, U., Tzuri, G., Zheng, Y., Mazourek, M., Gepstein, …
Plant Physiology.
173
:
376–389
Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement
2017.
Duan, N., Bai, Y., Sun, H., Wang, N., Ma, Y., Li, M., Wang, X., Jiao, C., Legall, N., Mao, L., Wan, …
Nature Communications.
8
:
Unravelling the Genetic Diversity among Cassava Bemisia tabaci Whiteflies Using NextRAD Sequencing
2017.
Wosula, E. N., Chen, W., Fei, Zhangjun, Legg, J. P.
Genome biology and evolution.
9
:
2958–2973
The Tomato Kinase Pti1 Contributes to Production of Reactive Oxygen Species in Response to Two Flagellin-Derived Peptides and Promotes Resistance to Pseudomonas syringae Infection
2017.
Schwizer, S., Kraus, C. M., Dunham, D. M., Zheng, Y., Fernandez-Pozo, N., Pombo, M. A., Fei, Zhangju…
Molecular Plant-Microbe Interactions.
30
:
725–738
Delayed response to cold stress is characterized by successive metabolic shifts culminating in apple fruit peel necrosis
2017.
Gapper, N. E., Hertog, M. LATM, Lee, J., Buchanan, D. A., Leisso, R. S., Fei, Zhangjun, Qu, G., Giov…
BMC Plant Biology.
17
:
Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis
2017.
Yan, J., Chia, J. C., Sheng, H., Jung, H. I., Zavodna, T. O., Lu, Z., Huang, R., Jiao, C., Craft, E.…
The Plant Cell.
29
:
tpc.00363.2017–tpc.00363.2017
The Epigenome and Transcriptional Dynamics of Fruit Ripening
2017.
Giovannoni, James J., Nguyen, C., Ampofo, B., Zhong, S., Fei, Zhangjun
Annual Review of Plant Biology.
68
:
61–84
The Tomato Expression Atlas
2017.
Fernandez-Pozo, N., Zheng, Y., Snyder, S. I., Nicolas, P., Shinozaki, Y., Fei, Zhangjun, Catala, Car…
Bioinformatics (Oxford, England).
33
:
2397–2398
Analysis of the tomato leaf transcriptome during successive hemibiotrophic stages of a compatible interaction with the oomycete pathogen Phytophthora infestans
2016.
Zuluaga, A. P., Vega-Arreguín, J. C., Fei, Zhangjun, Matas, A. J., Patev, S., Fry, W. E., Rose, Joc…
Molecular Plant Pathology.
17
:
42–54
Evolutionary conservation of candidate osmoregulation genes in plant phloem sap-feeding insects
2016.
Jing, X., White, T. A., Luan, J., Jiao, C., Fei, Zhangjun, Douglas, A. E.
Insect Molecular Biology.
25
:
251–258
Correction for Zhang et al., Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation
2016.
Zhang, B., Tieman, D. M., Jiao, C., Xu, Y., Chen, K., Fei, Zhangjun, Giovannoni, James J., Klee, H. …
Proceedings of the National Academy of Sciences of the United States of America.
113
:
E8007–E8007
iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
2016.
Zheng, Y., Jiao, C., Sun, H., Rosli, H. G., Pombo, M. A., Zhang, P., Banf, M., Dai, X., Martin, Greg…
Molecular Plant.
9
:
1667–1670
Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size
2016.
Wang, L., Hu, X., Jiao, C., Li, Z., Fei, Zhangjun, Yan, X., Liu, C., Wang, Y., Wang, X.
BMC Genomics.
17
:
The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees
2016.
Huang, J., Zhang, C., Zhao, X., Fei, Zhangjun, Wan, K. K., Zhang, Z., Pang, X., Yin, X., Bai, Y., Su…
PLoS Genetics.
12
:
e1006433–e1006433
HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots
2016.
Kim, E. S., Choe, G., Sebastian, J., Ryu, K. H., Mao, L., Fei, Zhangjun, Lee, J. Y.
Physiologia Plantarum.
157
:
221–233
Comprehensive Transcriptome Profiling Reveals Long Noncoding RNA Expression and Alternative Splicing Regulation during Fruit Development and Ripening in Kiwifruit (Actinidia chinensis)
2016.
Tang, W., Zheng, Y., Dong, J., Yu, J., Yue, J., Liu, F., Guo, X., Huang, S., Wisniewski, M., Sun, J.…
Frontiers in Plant Science.
7
:
Pathogen Infection and MORC Proteins Affect Chromatin Accessibility of Transposable Elements and Expression of Their Proximal Genes in Arabidopsis
2016.
Bordiya, Y., Zheng, Y., Nam, J. C., Bonnard, A. C., Choi, H. W., Lee, B. K., Kim, J., Klessig, Danie…
Molecular Plant-Microbe Interactions.
29
:
674–687
Vascular-mediated signalling involved in early phosphate stress response in plants
2016.
Zhang, Z., Zheng, Y., Ham, B. K., Chen, J., Yoshida, A., Kochian, L. V., Fei, Zhangjun, Lucas, W. J.
Nature Plants.
2
:
16033–16033
The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host 5 adaptation, and insecticide resistance
2016.
Chen, W., Hasegawa, D. K., Kaur, N., Kliot, A., Pinheiro, P. V., Luan, J., Stensmyr, M. C., Zheng, Y…
BMC Biology.
14
:
Fruit carotenoid-deficient mutants in tomato reveal a function of the plastidial isopentenyl diphosphate isomerase (IDI1) in carotenoid biosynthesis
2016.
Pankratov, I., McQuinn, R., Schwartz, J., Bar, E., Fei, Zhangjun, Lewinsohn, E., Zamir, D., Giovanno…
The Plant Journal.
88
:
82–94
Using Small RNA Deep Sequencing Data to Detect Human Viruses
2016.
Wang, F., Sun, Y., Ruan, J., Chen, R., Chen, X., Chen, C., Kreuze, J. F., Fei, Zhangjun, Zhu, X., Ga…
BioMed Research International.
2016
:
2596782–9
Identification of miRNAs and their targets through high-throughput sequencing and degradome analysis in male and female Asparagus officinalis
2016.
Chen, J., Zheng, Y., Qin, L., Wang, Y., Chen, L., He, Y., Fei, Zhangjun, Lu, G.
BMC Plant Biology.
16
:
Insights into the Mechanisms Underlying Ultraviolet-C Induced Resveratrol Metabolism in Grapevine (V. amurensis Rupr.) cv. “Tonghua-3”
2016.
Yin, X., Singer, S. D., Qiao, H., Liu, Y., Jiao, C., Wang, H., Li, Z., Fei, Zhangjun, Wang, Y., Fan,…
Frontiers in Plant Science.
7
:
A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein
2016.
Worley, J. N., Pombo, M. A., Zheng, Y., Dunham, D. M., Myers, C. R., Fei, Zhangjun, Martin, Gregory …
BMC Genomics.
17
:
Transcriptome Profiling of Petal Abscission Zone and Functional Analysis of an Aux/IAA Family Gene RhIAA16 Involved in Petal Shedding in Rose
2016.
Gao, Y., Liu, C., Li, X., Xu, H., Liang, Y., Ma, N., Fei, Zhangjun, Gao, J., Jiang, C. Z., Ma, C.
Frontiers in Plant Science.
7
:
Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL
2016.
Liu, Z., Alseekh, S., Brotman, Y., Zheng, Y., Fei, Zhangjun, Tieman, D. M., Giovannoni, James J., Fe…
Frontiers in Plant Science.
7
:
The complete mitochondrial genome sequence of Malus hupehensis var. pinyiensis
2016.
Duan, N., Sun, H., Wang, N., Fei, Zhangjun, Chen, X.
Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis.
27
:
2905–2906
Nonuniform gene expression pattern detected along the longitudinal axis in the matured rice leaf
2015.
Li, N., Chen, Y. R., Ding, Z., Li, P., Wu, Y., Zhang, A., Yu, S., Giovannoni, James J., Fei, Zhangju…
Nature Scientific Reports.
5
:
Gibberellin-induced changes in the transcriptome of grapevine (Vitis labrusca × V. vinifera) cv. Kyoho flowers
2015.
Cheng, C., Jiao, C., Singer, S. D., Gao, M., Xu, X., Zhou, Y., Li, Z., Fei, Zhangjun, Wang, Y., Wang…
BMC Genomics.
16
:
128–128
Complete Genome Sequence of a Tomato-Infecting Tomato Mottle Mosaic Virus in New York
2015.
Padmanabhan, C., Zheng, Y., Li, R., Martin, Gregory B., Fei, Zhangjun, Ling, K. S.
Genome Announcements.
3
:
e01523-15–e01523-15
Complete Genome Sequence of an Emerging Melon Necrotic Spot Virus Isolate Infecting Greenhouse Cucumber in North America
2015.
Li, R., Zheng, Y., Fei, Zhangjun, Ling, K. S.
Genome Announcements.
3
:
e00775-15–e00775-15
Metabolic Coevolution in the Bacterial Symbiosis of Whiteflies and Related Plant Sap-Feeding Insects
2015.
Luan, J. B., Chen, W., Hasegawa, D. K., Simmons, A., Wintermantel, W. M., Ling, K. S., Fei, Zhangjun…
Genome biology and evolution.
7
:
2635–2647
Complete Genome Sequence of a Novel Genotype of Squash Mosaic Virus Infecting Squash in Spain
2015.
Li, R., Gao, S., Berendsen, S., Fei, Zhangjun, Ling, K. S.
Genome Announcements.
3
:
e01583-14–e01583-14
A dynamic evolutionary and functional landscape of plant phased small interfering RNAs
2015.
Zheng, Y., Wang, Y., Wu, J., Ding, B., Fei, Zhangjun
BMC Biology.
13
:
A bulk segregant transcriptome analysis reveals metabolic and cellular processes associated with Orange allelic variation and fruit β-carotene accumulation in melon fruit
2015.
Chayut, N., Yuan, Hui, Ohali, S., Meir, A., Yeselson, Y., Portnoy, V., Zheng, Y., Fei, Zhangjun, Lew…
BMC Plant Biology.
15
:
Candidate gene selection and detailed morphological evaluations of fs8.1 , a quantitative trait locus controlling tomato fruit shape
2015.
Sun, L., Rodriguez, G. R., Clevenger, J. P., Illa-Berenguer, E., Lin, J., Blakeslee, J. J., Liu, W.,…
Journal of Experimental Botany.
66
:
6471–6482
Messenger RNA exchange between scions and rootstocks in grafted grapevines
2015.
Yang, Y., Mao, L., Jittayasothorn, Y., Kang, Y., Jiao, C., Fei, Zhangjun, Zhong, G. Y.
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TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik.
121
:
511–533
Transcriptional profiles of drought-responsive genes in modulating transcription signal transduction, and biochemical pathways in tomato
2010.
Gong, P., Zhang, J., Li, H., Yang, C., Zhang, C., Zhang, X., Khurram, Z., Zhang, Y., Wang, T., Fei, …
Journal of Experimental Botany.
61
:
3563–3575
Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim
2010.
Zeng, S., Xiao, G., Guo, J., Fei, Zhangjun, Xu, Y., Roe, B. A., Wang, Y.
BMC Genomics.
11
:
94–94
Use of homologous and heterologous gene expression profiling tools to characterize transcription dynamics during apple fruit maturation and ripening
2010.
Costa, F., Alba, R., Schouten, H., Soglio, V., Gianfranceschi, L., Serra, S., Musacchi, S., Sansavin…
BMC Plant Biology.
10
:
229–229
Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model
2009.
Joung, J. G., Fei, Zhangjun
Bioinformatics (Oxford, England).
25
:
387–393
Identification of cell cycle-related regulatory motifs using a kernel canonical correlation analysis
2009.
Rhee, J. K., Joung, J. G., Chang, J. H., Fei, Zhangjun, Zhang, B. T.
BMC Genomics.
10
:
S29–S29
Identification of Solanum habrochaites loci that quantitatively influence tomato fruit ripening-associated ethylene emissions
2009.
Cin, V. D., Kevany, B., Fei, Zhangjun, Klee, H. J.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik.
119
:
1183–1192
Flavour compounds in tomato fruits: Identification of loci and potential pathways affecting volatile composition
2009.
Mathieu, S., Cin, V. D., Fei, Zhangjun, Li, H., Bliss, P., Taylor, M. G., Klee, H. J., Tieman, D. M.
Journal of Experimental Botany.
60
:
325–337
Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information
2009.
Joung, J. G., Fei, Zhangjun
BMC Bioinformatics.
10
:
S34–S34
A Snapshot of the Emerging Tomato Genome Sequence
2009.
Mueller, Lukas A., Lankhorst, R. K., Tanksley, S. D., Giovannoni, James J., White, R., Vrebalov, J.,…
The Plant Genome.
2
:
78–92
Abnormal Physiological and Molecular Mutant Phenotypes Link Chloroplast Polynucleotide Phosphorylase to the Phosphorus Deprivation Response in Arabidopsis
2009.
Marchive, C., Yehudai-Resheff, S., Germain, A., Fei, Zhangjun, Jiang, X., Judkins, J., Wu, H., Ferni…
Plant Physiology.
151
:
905–924
The genome of the cucumber, Cucumis sativus L
2009.
Huang, S., Li, R., Zhang, Z., Li, L., Gu, X., Fan, W., Lucas, W. J., Wang, X., Xie, B., Ni, P., Ren,…
Nature genetics.
41
:
1275–1281
Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology
2009.
Joung, J. G., Corbett, A. M., Fellman, S. M., Tieman, D. M., Klee, H. J., Giovannoni, James J., Fei,…
Plant Physiology.
151
:
1758–1768
Genome Sequence of Brucella abortus Vaccine Strain S19 Compared to Virulent Strains Yields Candidate Virulence Genes
2008.
Crasta, O. R., Folkerts, O., Fei, Zhangjun, Mane, S. P., Evans, C., Martino-Catt, S., Bricker, B., Y…
PLOS One.
3
:
e2193–e2193
Small RNAs in tomato fruit and leaf development
2008.
Itaya, A., Bundschuh, R., Archual, A. J., Joung, J. G., Fei, Zhangjun, Dai, X., Zhao, P. X., Tang, Y…
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms.
1779
:
99–107
Genetic association of ETHYLENE-INSENSITIVE3-like sequence with the sex-determining M locus in cucumber (Cucumis sativus L.)
2008.
Liu, S., Xu, L., Jia, Z., Xu, Y., Yang, Q., Fei, Zhangjun, Lu, X., Chen, H., Huang, S.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik.
117
:
927–933
Identification and characterisation of resistance gene analogues from wild Chinese Vitis species
2008.
Wang, X. P., Wang, Y. J., Fei, Zhangjun
The Journal of Horticultural Science and Biotechnology.
83
:
345–350
Gene expression in developing watermelon fruit
2008.
Wechter, W. P., Levi, A., Harris, K. R., Davis, A. R., Fei, Zhangjun, Katzir, N., Giovannoni, James …
BMC Genomics.
9
:
275–275
Genome-Based Analysis of Chlamydomonas reinhardtii Exoribonucleases and Poly(A) Polymerases Predicts Unexpected Organellar and Exosomal Features
2008.
Zimmer, S. L., Fei, Zhangjun, Stern, David
Genetics.
179
:
125–136
Identification of early salt stress response genes in tomato root by suppression subtractive hybridization and microarray analysis
2007.
Ouyang, B., Yang, T., Li, H., Zhang, L., Zhang, Y., Zhang, J., Fei, Zhangjun, Ye, Z.
Journal of Experimental Botany.
58
:
507–520
Early Blood Profiles of Virus Infection in a Monkey Model for Lassa Fever
2007.
Djavani, M. M., Crasta, O. R., Zapata, J. C., Fei, Zhangjun, Folkerts, O., Sobral, B., Swindells, M.…
Journal of Virology.
81
:
7960–7973
Impact of intestinal colonization and invasion on the Entamoeba histolytica transcriptome
2006.
Gilchrist, C. A., Houpt, E., Trapaidze, N., Fei, Zhangjun, Crasta, O., Asgharpour, A., Evans, C., Ma…
Molecular and Biochemical Parasitology.
147
:
163–176
Transcriptome and Selected Metabolite Analyses Reveal Multiple Points of Ethylene Control during Tomato Fruit Development
2005.
Alba, R., Payton, P., Fei, Zhangjun, McQuinn, R., Debbie, P., Martin, Gregory B., Tanksley, S. D., G…
The Plant Cell.
17
:
2954–2965
Comprehensive EST analysis of tomato and comparative genomics of fruit ripening
2004.
Fei, Zhangjun, Tang, X., Alba, R. M., White, J. A., Ronning, C. M., Martin, Gregory B., Tanksley, S.…
The Plant Journal.
40
:
47–59
ESTs, cDNA microarrays, and gene expression profiling: Tools for dissecting plant physiology and development
2004.
Alba, R., Fei, Zhangjun, Payton, P., Liu, Y., Moore, S. L., Debbie, P., Cohn, J., D'Ascenzo, M., Gor…
The Plant Journal.
39
:
697–714

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