Publications – Zhangjun Fei

A Citrullus genus super-pangenome reveals extensive variations in wild and cultivated watermelons and sheds light on watermelon evolution and domestication
2023.
Wu, S., Sun, H., Gao, L., Branham, S., McGregor, C., Renner, S.S., Xu, Y., Kousik, C., Wechter, W.P., Levi, A,. Fei, Zhangjun
Plant Biotechnology Journal.
:
Starch deficiency in tomato causes transcriptional reprogramming that modulates fruit development, metabolism and stress responses
2023.
Nicolas, P., Pattison, R.J., Zheng, Y., Lapidot-Cohen, T., Brotman, Y., Osorio, S., Fernie, A.R., Fei, Zhangjun, Catala, Carmen.
Journal of Experimental Botany.
:
Transcriptomic and metabolic profiling of watermelon uncovers the role of salicylic acid and flavonoids in the resistance to cucumber green mottle mosaic virus
2023.
Liu, M., Kang, B., Wu, H., Aranda, M.A., Peng, B., Liu, L., Fei, Zhangjun, Hong, N., Gu, Q.
Journal of Experimental Botany.
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Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species
2023.
Li, N., He, Q.,Wang, J., Wang, B., Zhao, J., Huang, S., Yang, T., Tang, Y., Yang, S., Aisimutuola, P., Xu, R., Hu, J., Jia, C., Ma, K., Li, Z., Jiang, F., Gao, J., Lan, H., Zhou, Y., Zhang, X., Huang, S., Fei, Zhangjun, Wang, H., Li, H., Yu, Q.
Nature Genetics.
55
:
852–860
Genomic analyses reveal dead-end hybridization between two deeply divergent kiwifruit species rather than homoploid hybrid speciation
2023.
Yu, X., Qin, M., Qu, M., Jiang, Q., Guo, S., Chen, Z., Shen, Y., Fu, G., Fei, Zhangjun, Huang, H., Gao, L., Yao, X.
The Plant Journal.
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SnRK1 kinase-mediated phosphorylation of transcription factor bZIP39 regulates sorbitol metabolism in apple
2023.
Meng, D., Cao, H., Yang, Q., Zhang, M., Borejsza-Wysocka, E., Wang, H., Dandekar, A.M., Fei, Zhangjun, Cheng. L.
Plant Physiology.
:
The Torreya grandis genome illuminates the origin and evolution of gymnosperm-specific sciadonic acid biosynthesis.
2023.
Lou, H., Song, L., Li, X., Zi, H., Chen, W., Gao, Y., Zheng, S., Fei, Zhangjun, Sun, X., Wu, J.
Nat Commun..
14
:
1315
Characterization of the USDA Cucurbita pepo, C. moschata, and C. maxima germplasm collections
2023.
Hernandez, C.O., Labate, J., Reitsma, K., Fabrizio, J., Bao, K., Fei, Zhangjun, Grumet, R., Mazourek, M.
Frontiers in Plant Science.
14
:
Loss of OPT3 function decreases phloem copper levels and impairs crosstalk between copper and iron homeostasis and shoot-to-root signaling in Arabidopsis thaliana
2023.
Chia, J.C., Yan, J., Rahmati Ishka, M., Faulkner, M.M., Simons, E., Huang, R., Smieska, L., Woll, A., Tappero, R., Kiss, A., Jiao, C., Fei, Zhangjun, Kochian, L.V., Walker, E., Piñeros, M., Vatamaniuk, O.K.
Plant Cell.
35
:
2157–2185
Horizontally transferred genes as RNA interference targets for aphid and whitefly control
2022.
Feng, H., Chen, W., Hussain, S., Shakir, S., Tzin, V., Adegbayi, F., Ugine, T., Fei, Zhangjun, Jander, Georg
Plant Biotechnol J..
:
Domestication and selection footprints in Persian walnuts (Juglans regia)
2022.
Luo, X., Zhou, H., Cao, D., Yan, F., Chen, P., Wang, J., Woeste, K., Chen, X., Fei, Zhangjun, An, H., Malvolti, M., Ma, K., Liu, C., Ebrahimi, A., Qiao, C., Ye, H., Li, M., Lu, Z., Xu, J., Cao, S., Zhao, P.
PLoS Genet..
18
:
e1010513
Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence.
2022.
Tu, X., Ren, S., Shen, W., Li, J., Li, Y., Li, C., Li, Y., Zong, Z., Xie, W., Grierson, D., Fei, Zhangjun, Giovannoni, James J., Li, P., Zhong, S.
Nat Commun..
13
:
7632
CuGenDBv2: an updated database for cucurbit genomics.
2022.
Yu, J., Wu, S., Sun, H., Wang, X., Tang, X., Guo, S., Zhang, Z., Huang, S., Xu, Y., Weng, Y., Mazourek, M., McGregor, C., Renner, S.S., Branham, S., Kousik, C., Wechter, W.P., Levi, A., Grumet, R., Zheng, Y., Fei, Zhangjun
Nucleic Acids Res..
51
:
D1457–D1464
Loss of function of the bHLH transcription factor Nrd1 in tomato enhances resistance to Pseudomonas syringae
2022.
Zhang, N., Hecht, C., Sun, X., Fei, Zhangjun, Martin, Gregory B.
Plant Physiol..
190
:
1334–1348
Spatiotemporal dynamics of the tomato fruit transcriptome under prolonged water stress.
2022.
Nicolas, P., Shinozaki, Y., Powell, A., Philippe, G., Snyder, S.I., Bao, K., Zheng, Y., Xu, Y., Courtney, L., Vrebalov, J., Casteel, C.L., Mueller, Lukas A., Fei, Zhangjun, Giovannoni, James J., Rose, J.K.C., Catalá, Carmen
Plant Physiol..
:
Rapid growth of Moso bamboo (Phyllostachys edulis): Cellular roadmaps, transcriptome dynamics, and environmental factors
2022.
Chen, M., Guo, L., Ramakrishnan, M., Fei, Zhangjun., Vinod, K.K., Ding, Y., Jiao, C., Gao, Z., Zha, R., Wang, C., Gao, Z., Yu, F., Ren, G., Wei, Q.
The Plant Cell.
34
:
3577–3610
Cellular differentiation, hormonal gradient, and molecular alternation between the division zone and the elongation zone of bamboo internodes
2022.
Guo, L., Wang, C., Chen, J., Ju, Y., Yu, F., Jiao, C., Fei, Zhangjun, Ding, Y., Wei, Q.
Physiologia Plantarum.
174
:
e13744
An apple somatic mutation of delayed fruit maturation date is primarily caused by a retrotransposon insertion-associated large deletion
2022.
Ban, S., El-Sharkawy, I., Zhao, J., Fei, Zhangjun, Xu, K.
The Plant Journal.
111
:
1609–1625
Genome Sequencing of up to 6,000-Year-Old Citrullus Seeds Reveals Use of a Bitter-Fleshed Species Prior to Watermelon Domestication
2022.
Pérez-Escobar, O.A., Tusso, S., Przelomska, N.A.S., Wu, S., Ryan, P., Nesbitt, M., Silber, M.V., Preick, M., Fei, Zhangjun, Hofreiter, M., Chomicki, G., Renner, S.S.
Molecular Biology and Evolution.
39
:
Long-Term Lacticaseibacillus rhamnosus GG Storage at Ambient Temperature in Vegetable Oil: Viability and Functional Assessments
2022.
Davachi, S.M., Dogan, B., Khazdooz, L., Zhang, S., Khojastegi, A., Fei, Zhangjun, Sun, H., Meletharayil, G., Kapoor, R., Simpson, K.W., Abbaspourrad, A.
Journal of Agricultural and Food Chemistry.
70
:
9399–9411
Chromosome-scale genome assemblies of wild tomato relatives Solanum habrochaites and Solanum galapagense reveal structural variants associated with stress tolerance and terpene biosynthesis
2022.
Yu, X., Qu, M., Shi, Y., Hao, C., Guo, S., Fei, Zhangjun, Gao, L.
Horticulture Research.
9
:
Graph pangenome captures missing heritability and empowers tomato breeding.
2022.
Zhou, Y., Zhang, Z., Bao, Z., Li, H., Lyu, Y., Zan, Y., Wu, Y., Cheng, L., Fang, Y., Wu, K., Zhang, J., Lyu, H., Lin, T., Gao, Q., Saha, S., Mueller, Lukas A., Fei, Zhangjun, Städler, T., Xu, S., Zhang, Z., Speed, D., Huang, S.
Nature.
606
:
527–534
Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance
2022.
Cao, K., Peng, Z., Zhao, X., Li, Y., Liu, K., Arus, P., Fang, W., Chen, C., Wang, X., Wu, J., Fei, Zhangjun , Wang, L.
BMC Biology.
20(1)
:
Genomic insights into the origin, adaptive evolution, and herbicide resistance of Leptochloa chinensis, a devastating tetraploid weedy grass in rice fields
2022.
Wang, L., Sun, X., Peng, Y., Chen, K., Wu, S., Guo, Y., Zhang, J., Yang, H., Jin, T., Wu, L., Zhou, X., Liang, B., Zhao, Z., Liu, D., Fei, Zhangjun, Bai, L.
15
:
1045–1058
Combined nature and human selections reshaped peach fruit metabolome
2022.
Cao, K., Wang, B., Fang, W., Zhu, G., Chen, C., Wang, X., Li, Y., Wu, J., Tang, T., Fei, Zhangjun, Luo, J., Wang, L.
Genome Biology.
23(1)
:
Dynamically expressed small RNAs, substantially driven by genomic structural variants, contribute to transcriptomic changes during tomato domestication
2022.
Qing, Y., Zheng, Y., Mlotshwa, S., Smith, H.N., Wang, X., Zhai, X., van der Knaap, E., Wang, Y., Fei, Zhangjun
The Plant Journal.
110
:
1536–1550
The tomato yellow leaf curl virus C4 protein alters the expression of plant developmental genes correlating to leaf upward cupping phenotype in tomato.
2022.
Padmanabhan, C., Zheng, Y., Shamimuzzaman, M., Wilson, J.R., Gilliard, A., Fei, Zhangjun, Ling, K.S.
PLoS One.
17
:
e0257936
A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity.
2022.
Powell, A.F., Feder, A., Li, J., Schmidt, M.H., Courtney, L., Alseekh, S., Jobson, E.M., Vogel, A., Xu, Y., Lyon, D., Dumschott, K., McHale, M., Sulpice, R., Bao, K., Lal, R., Duhan, A., Hallab, A., Denton, A.K., Bolger, M.E., Fernie, A.R., Hind, S.R., Mueller, Lukas A., Martin, Gregory B., Fei, Zhangjun, Martin, C., Giovannoni, James J., Strickler, S.R., Usadel, B.
Plant J..
110
:
1791–1810
Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber
2022.
Li, H., Wang, S., Chai, S., Yang, Z., Zhang, Q., Xin, H., Xu, Y., Lin, S., Chen, X., Yao, Z., Yang, Q., Fei, Zhangjun, Huang, S., Zhang, Z.
Nature Communications.
13
:
Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits
2021.
Cai, X., Sun, X., Xu, C., Sun, H., Wang, X., Ge, C., Zhang, Z., Wang, Q., Fei, Zhangjun, Jiao, C., Wang, Q.
Nat Commun..
12
:
7246
Interspecific Recombination Between Zucchini Tigre Mosaic Virus and Papaya Ringspot Virus Infecting Cucurbits in China
2021.
Peng, B., Liu, L., Wu, H., Kang, B., Fei, Zhangjun, Gu, Q.
Frontiers in Microbiology.
12
:
Bt Cry1Ac resistance in Trichoplusia ni is conferred by multi-gene mutations
2021.
Ma, X., Shao, E., Chen,W., Cotto-Rivera, R., Yang, W., Kain, W., Fei, Zhangjun, Wang, P.
Insect Biochemistry and Molecular Biology.
140
:
A systems genetics approach reveals PbrNSC as a regulator of lignin and cellulose biosynthesis in stone cells of pear fruit
2021.
Wang, R., Xue, Y., Fan, F., Yao, J., Qin, M., Lin, T., Lian, Q., Zhang, M., Li, X., Li, J., Sun, M., Song, B., Zhang, J., Zhao, K., Chen, X., Hu, H., Fei, Zhangjun, Xue, C., Wu, J.
Genome Biology.
22
:
Spelling Changes and Fluorescent Tagging With Prime Editing Vectors for Plants
2021.
Wang, L., Kaya, H. B., Zhang, N., Rai, R., Willmann, M. R., Carpenter, S., Read, A. C., Martin, F., Fei, Zhangjun, Leach, J. E., Martin, Gregory B., & Bogdanove, A. J.
Frontiers in Genome Editing.
3
:
Cellular and molecular characterizations of the irregular internode division zone formation of a slow growing bamboo variant
2021.
Gao, Z., Guo, L., Ramakrishnan, M., Xiang, Y., Jiao, C., Jiang, J., Vinod, K.K., Fei, Zhangjun, Que, F., Ding, Y., Yu, F., Chen, T., Wei, Q.
Tree Physiology.
:
Genome-wide association study reveals the genetic architecture of 27 agronomic traits in tomato
2021.
Ye, J., Wang, X., Wang, W., Yu, H., Ai, G., Li, C., Sun, P., Wang, X., Li, H., Ouyang, B., Zhang, J., Zhang, Y., Han, H., Giovannoni, James, Fei, Zhangjun, Ye, Z.
Plant Physiology.
186
:
2078–2092
Genetic Resources and Vulnerabilities of Major Cucurbit Crops
2021.
Grumet, R., McCreight, J.D., McGregor, C., Weng, Y., Mazourek, M., Reitsma, K., Labate, J., Davis, A., Fei, Zhangjun
Genes.
12
:
1222
A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening.
2021.
Shi, Y., Vrebalov, J., Zheng, H., Xu, Y., Yin, X., Liu, W., Liu, Z., Sorensen, I., Su, G., Ma, Q., Evanich, D., Rose, J.K.C., Fei, Zhangjun, Van Eck, Joyce, Thannhauser, T., Chen, K., Giovannoni, James J.
Proc Natl Acad Sci.
118
:
Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics
2021.
Yue, J., Liu, J., Tang, W., Wu, YQ., Tang, X., Li, W., Yang, Y., Wang, L., Huang, S., Fang, C., Zhao, K., Fei, Zhangjun, Liu, Y., Zheng, Y.
Horticulture Research.
7(1)
:
Natural Genetic Diversity in Tomato Flavor Genes
2021.
Pereira, L., Sapkota, M., Alonge, M., Zheng, Y., Zhang, Y., Razifard, H., Taitano, NK., Schatz, MC., Fernie, AR., Wang, Y., Fei, Zhangjun, Caicedo, AL., Tieman, DM., van der Knaap, E.
Frontiers in Plant Science.
:
A chromosome-level genome of a Kordofan melon illuminates the origin of domesticated watermelons
2021.
Renner, SS., Wu, S., Pérez-Escobar, OA., Silber,MV., Fei, Zhangjun, Chomicki, G.
Proceedings of the National Academy of Sciences of the United States of America.
118
:
Unraveling a Genetic Roadmap for Improved Taste in the Domesticated Apple
2021.
Liao, L., Zhang, W., Zhang, B., Fang, T., Wang, X.F., Cai, Y., Ogutu, C., Gao, L., Chen, G., Nie, X., Xu, J., Zhang, Q., Ren, Y., Yu, J., Wang, C., Deng, C.H., Ma, B., Zheng, B., You, C.X., Hu, D.G., Espley, R., Lin-Wang, K., Yao, J.L., Allan, A.C., Khan, A., Korban, S.S., Fei, Zhangjun, Ming, R., Hao, Y.J., Li, L., Han, Y.
Mol Plant.
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A chromosome-level genome of a Kordofan melon illuminates the origin of domesticated watermelons
2021.
Renner, S.S., Wu, S., Perez-Escobar, O.A., Silber, M.V., Fei, Zhangjun, Chomicki, G.
Proc Natl Acad Sci U S A.
:
PIF4 negatively modulates cold tolerance in tomato anthers via temperature-dependent regulation of tapetal cell death
2021.
Pan, C., Yang, D., Zhao, X., Liu, Y., Li, M., Ye, L., Ali, M., Yu, F., Lamin-Samu, A.T., Fei, Zhangjun, Lu, G.
Plant Cell.
:
Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification
2021.
Guo, N., Wang, S., Gao, L., Liu, Y., Wang, X., Lai, E., Duan, M., Wang, G., Li, J., Yang, M., Zong, M., Han, S., Pei, Y., Borm, T., Sun, H., Miao, L., Liu, D., Yu, F., Zhang, W., Ji, H., Zhu, C., Xu, Y., Bonnema, G., Li, J., Fei, Zhangjun, Liu, F.
BMC Biol..
:
Comparative transcriptome profiling of Chinese wild grapes provides insights into powdery mildew resistance
2021.
Jiao, C., Sun, X., Yan, X., Xu, X., Yan, Q., Gao, M., Fei, Zhangjun, Wang, X.
:
Ethylene-regulated asymmetric growth of the petal base promotes flower opening in rose (Rosa hybrida)
2021.
Cheng, C., Yu, Q., Wang, Y., Wang, H., Dong, Y., Ji, Y., Zhou, X., Li, Y., Jiang, C.Z., Gan, S.S., Zhao, L., Fei, Zhangjun, Gao, J., Ma, N.
Plant Cell..
:
Genomic analyses provide insights into peach local adaptation and responses to climate change
2021.
Li, Y., Cao, K, Li, N., Zhu, G., Fang, Q., Chen, C., Wang, X., Guo, J., Wang, Q., Wang J., Guan, L., Wang, J., Liu, K., Guo, W., Arus, P., Huang, S., Fei, Zhangjun, Wang, L.
Genome Res..
:
Genome-wide association studies provide insights into the genetic determination of fruit traits of pear
2021.
Zhang, M.Y., Cheng, X., Hu, H., Li, J., Xue, Y., Wang, R., Fan, J., Zou, C., Tao, S., Qin, M., Bai, B., Li, X., Gu, C., Wu, C., Yang, G., Chen, X., Liu, Y., Sun, M., Fei, Zhangjun, Zhang, S., Wu, J.
:
Transcriptome analysis provides insights into the responses of sweet potato to sweet potato virus disease (SPVD)
2021.
Bednarek, R., David, M., Fuentes, S., Kreuze, J., Fei, Zhangjun
:
Endomembrane architecture and dynamics during secretion of the extracellular matrix of the unicellular charophyte, Penium margaritaceum
2020.
Domozych, D.S., Sun, L., Palacio-Lopez, K., Reed, R., Jeon, S., Li, M., Jiao, C., Sorensen, I., Fei, Zhangjun, Rose, J.K.C.
J Exp Bot..
:
Auxin Regulates Sucrose Transport to Repress Petal Abscission in Rose (Rosa hybrida)
2020.
Liang, Y., Jiang, C., Liu, Y., Gao, Y., Lu, J., Aiwaili, P., Fei, Zhangjun, Jiang, C.Z., Hong, B., Ma, C., Gao, J.
Plant Cell.
:
The Penium margaritaceum Genome: Hallmarks of the Origins of Land Plants
2020.
Jiao, C., Sorensen, I., Sun, X., Sun, H., Behar, H., Alseekh, S., Philippe, G., Lopez, K.P., Sun, L., Reed, R., Jeon, S., Kiyonami, R., Zhang, S., Fernie, A.R., Brumer, H., Domozych, D.S., Fei, Zhangjun, Rose, J.K.C.
Cell.
:
The genome and transcriptome analysis of snake gourd provide insights into its evolution and fruit development and ripening
2020.
Ma, L., Wang, Q., Mu, J., Fu, Z., Wen, C., Zhao, X., Gao, L., Li, J., Shi, K., Wang, Y., Zhang, X., Zhang, X., Fei, Zhangjun, Frierson, D., Zuo, J.
Hortic Res..
:
Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding
2020.
Wang, X., Gao, L., Jiao, C., Stravoravdis, S., Hosmani, P.S., Saha, S., Zhang, J., Mainiero, S., Strickler, Susan, R., Catala, Carmen, Martin, Gregory, B., Mueller, Lukas A., Vrebalov, J., Giovannoni, James J., Wu, S., Fei, Zhangjun
Nat Commun.
11
:
5817
GWAS Based on RNA-Seq SNPs and High-Throughput Phenotyping Combined with Climatic Data Highlights the Reservoir of Valuable Genetic Diversity in Regional Tomato Landraces
2020.
Rodriguez, M., Scintu, A., Posadinu, C.M., Xu, Y., Nguyen, C.V., Sun, H., Bitocchi, E., Bellucci, E., Papa, R., Fei, Zhangjun, Giovannoni, James, J., Rau, D., Attene, G.
Genes (Basel).
11
:
Manipulation of ZDS in tomato exposes carotenoid- and ABA-specific effects on fruit development and ripening
2020.
McQuinn, R.P., Gapper, N.E., Gray, A.G., Zhong, S., Takayuki, T., Fei, Zhangjun, Fernie, A.R., Giovannoni, James J.
:
Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations
2020.
Zhou, C., Olukolu, B., Gemenet, D.C., Wu, S., Gruneberg, W., Cao, M.D., Fei, Zhangjun, Zeng, Z.B., George, A.W., Khan, A., Yencho, G.C., Coin, L.J.M.
:
Insights into population structure of East African sweetpotato cultivars from hybrid assembly of chloroplast genomes
2020.
Zhou, C., Duarte, T., Silvestre, R., Rossel, G., Mwanga, R.O.M., Khan, A., George, A.W., Fei, Zhangjun, Yencho, G.C., Ellis, D., Coin, L.J.M.
:
QTL associated with gummy stem blight resistance in watermelon
2020.
Gimode, W., Bao, K., Fei, Zhangjun, McGregor, C.
:
Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication
2020.
Sun, X., Jiao, C., Schwaninger, H., Chao, C.T., Ma, Y., Duan, N., Khan, A., Ban, S., Xu, K., Cheng, L., Zhang, G.Y., Fei, Zhangjun
:
CFM1, a Member of the CRM-domain Protein Family, Functions in Chloroplast Group II Intron Splicing in Setaria viridis
2020.
Feiz, L., Asakura, Y., Mao, L., Strickler, Susan R., Fei, Zhangjun, Rojas, M., Barkan, A., Stern, David
:
Comprehensive transcriptome analysis and functional characterization of PR-5 for its involvement in tomato Sw-7 resistance to tomato spotted wilt tospovirus
2020.
Padmanabhan, C., Ma, Q., Shekasteband, R., Steward, K.S., Hutton, S.F., Scott, J.W., Fei, Zhangjun, Ling, K.S.
Sci Rep.
:
Genome sequence of Fusarium oxysporum f. sp. conglutinans, the etiological agent of cabbage Fusarium wilt
2020.
Yu, F., Zhang, W., Wang, S., Wang, H., Yu, L., Zeng, X., Fei, Zhangjun, Li, J.
Mol Plant Microbe Interact..
:
An integrated peach genome structural variation map uncovers genes associated with fruit traits
2020.
Guo, J., Cao, K., Deng, C., Li, Y., Zhu, G., Fang, W., Chen, C., Wang, X., Wu, J., Guan, L., Wu, S., Guo, W., Yao, J.L., Fei, Zhangjun, Wang, L.
Genome Biol..
21
:
258
QTL mapping of resistance to Fusarium oxysporum f. sp. niveum race 2 and Papaya ringspot virus in Citrullus amarus
2020.
Branham, S.E., Wechter, W.P., Ling, K., Chanda, B., Massey, L., Zhao, G., Guner, N., Bello, M., Kabelka, E., Fei, Zhangjun, Levi, A.
Theor Appl Genet..
133
:
677–687
Dietary Fructose Alters the Composition, Localization and Metabolism of Gut Microbiota in Association with Worsening Colitis
2020.
Montrose, D.C., Nishiguchi, R., Basu, S., Staab, H.A., Zhou, X.K., Wang, H., Meng, L., Johncilla, M, Cubillos-Ruiz, J.R., Morales, D.K., Wells, M.T., Simpson K.W., Zhang, S., Dogan, B., Jiao, C., Fei, Zhangjun, Oka, A., Herzog, J.W., Sartor, R.B., Dannenberg, A.J.
Cell Mol Gastroenterol Hepatol.
:
Quantitative trait loci and differential gene expression analyses reveal the genetic basis for negatively associated β-carotene and starch content in hexaploid sweetpotato [Ipomoea batatas (L.) Lam.]
2020.
Gemenet, D.C., Pereira, G.S., De Boeck, B., Wood, J.C., Mollinari, M., Olukolu, B.A., Diaz, F., Mosquera, V., Ssali, R.T., David, M., Kitavi, M.N., Burgos, G., Felde, T.Z., Ghislain, M., Carey, E., Yencho, G.C., Zeng, Z.B., Mwanga, R.O.M., Khan, Fei, Zhangjun, Gruneberg, W.J., Buell, C.R.
Theor Appl Genet..
133
:
23–36
Genetic mapping of green curd gene Gr in cauliflower
2020.
Tan, H., Wang, X., Fei, Zhangjun, Li, H., Tadmor, Y., Mazourek, M., Li, L.
Theor Appl Genet..
133
:
353–364
Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics
2020.
Yue, J., Liu, J., Tang, W., Wu, Y.Q., Tang, X., Li, W., Yang, Y., Wang, L., Huang, S., Fang, C., Zhao, K., Fei, Zhangjun, Liu, Y., Zhang, Y
Hortic Res..
7
:
Deep Sequencing of Small RNAs in the Whitefly Bemisia tabaci Reveals Novel MicroRNAs Potentially Associated with Begomovirus Acquisition and Transmission
2020.
Hasegawa, D.K., Shamimuzzaman, M., Chen, W., Simmons, A.M., Fei, Zhangjun, Ling, K.S.
Insects..
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Auxin Regulates Sucrose Transport to Repress Petal Abscission in Rose (Rosa hybrida)
2020.
Liang, Y., Jiang, C., Liu, Y., Gao, Y., Lu, J., Aiwaili, P., Fei, Zhangjun, Jiang, C.Z., Hong, B., Ma, C., Gao, J.
Plant Cell..
:
Setaria viridis chlorotic and seedling-lethal mutants define critical functions for chloroplast gene expression
2020.
Feiz, L., Strickler, S.R., Van Eck, Joyce, Mao, L., Movahed, N., Taylor, C., Gourabathini, P., Fei, Zhangjun, Stern, David
Plant J..
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Rosa Hybrida RhERF1 and RhERF4 Mediate Ethylene- And Auxin-Regulated Petal Abscission by Influencing Pectin Degradation
2020.
Gao, Y., Liu, Y., Liang, Y., Lu, J., Jiang, C., Fei, Zhangjun, Jiang, C.Z., Ma, C., Gao, J.
Plant J..
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Identification of Conserved Gene-Regulatory Networks That Integrate Environmental Sensing and Growth in the Root Cambium
2020.
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2011.
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European Journal of Plant Pathology.
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Metabolism of soluble sugars in developing melon fruit: a global transcriptional view of the metabolic transition to sucrose accumulation
2011.
Dai, N., Cohen, S., Portnoy, V., Tzuri, G., Harel-Beja, R., Pompan-Lotan, M., Carmi, N., Zhang, G., Diber, A., Pollock, S., Karchi, H., Yeselson, Y., Petreikov, M., Shen, S., Sahar, U., Hovav, R., Lewinsohn, E., Tadmor, Y., Granot, D., Ophir, R., Sherman, A., Fei, Zhangjun, Giovannoni, J., Burger, Y., Katzir, N., Schaffer, A. A.
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Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis)
2011.
Zhou, X., Fei, Zhangjun, Thannhauser, T. W., Li, L.
BMC Plant Biology.
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Characterization of transcriptome dynamics during watermelon fruit development: Sequencing, assembly, annotation and gene expression profiles
2011.
Guo, S., Liu, J., Zheng, Y., Huang, M., Zhang, H., Gong, G., He, H., Ren, Y., Zhong, S., Fei, Zhangjun, Xu, Y.
BMC Genomics.
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Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor ( nor, rin ) and Ethylene Receptor ( Nr ) Mutants Reveals Novel Regulatory Interactions
2011.
Osorio, S., Alba, R., Damasceno, C. MB, Lopez-Casado, G., Lohse, M., Zanor, M. I., Tohge, T., Usadel, B., Rose, Jocelyn, Fei, Zhangjun, Giovannoni, James J., Fernie, A. R.
Plant Physiology.
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Regulatory control of high levels of carotenoid accumulation in potato tubers
2011.
Zhou, X., Mcquinn, R., Fei, Zhangjun, Wolters, A. MA, Van Eck, Joyce, Brown, C., Giovannoni, James J., Li, L.
Plant Cell and Environment.
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2011.
Zheng, Y., Zhao, L., Gao, J., Fei, Zhangjun
BMC Bioinformatics.
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A consensus linkage map for molecular markers and Quantitative Trait Loci associated with economically important traits in melon (Cucumis melo L.)
2011.
Diaz, A., Fergany, M., Formisano, G., Ziarsolo, P., Blanca, J., Fei, Zhangjun, Staub, J. E., Zalapa, J. E., Cuevas, H. E., Dace, G., Oliver, M., Boissot, N., Dogimont, C., Pitrat, M., Hofstede, R., van Koert, P., Harel-Beja, R., Tzuri, G., Portnoy, V., Cohen, S., Schaffer, A., Katzir, N., Xu, Y., Zhang, H., Fukino, N., Matsumoto, S., Garcia-Mas, J., Monforte, A. J.
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High-Throughput Illumina Strand-Specific RNA Sequencing Library Preparation
2011.
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Unexpected Diversity of Chloroplast Noncoding RNAs as Revealed by Deep Sequencing of the Arabidopsis Transcriptome
2011.
Hotto, A. M., Schmitz, R. J., Fei, Zhangjun, Ecker, J. R., Stern, David
G3: Genes|Genomes|Genetics.
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Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
2010.
Guo, S., Zheng, Y., Joung, J. G., Liu, S., Zhang, Z., Crasta, O. R., Sobral, B. W., Xu, Y., Huang, S., Fei, Zhangjun
BMC Genomics.
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High-frequency Oligonucleotides in Watermelon Expressed Sequenced Tag-unigenes Are Useful in Producing Polymorphic Polymerase Chain Reaction Markers among Watermelon Genotypes
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Interdependence of threonine, methionine and isoleucine metabolism in plants: Accumulation and transcriptional regulation under abiotic stress
2010.
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Amino Acids.
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A genetic map of melon highly enriched with fruit quality QTLs and EST markers, including sugar and carotenoid metabolism genes
2010.
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Transcriptional profiles of drought-responsive genes in modulating transcription signal transduction, and biochemical pathways in tomato
2010.
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Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim
2010.
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BMC Genomics.
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Use of homologous and heterologous gene expression profiling tools to characterize transcription dynamics during apple fruit maturation and ripening
2010.
Costa, F., Alba, R., Schouten, H., Soglio, V., Gianfranceschi, L., Serra, S., Musacchi, S., Sansavini, S., Costa, G., Fei, Zhangjun, Giovannoni, J.
BMC Plant Biology.
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Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model
2009.
Joung, J. G., Fei, Zhangjun
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Identification of cell cycle-related regulatory motifs using a kernel canonical correlation analysis
2009.
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BMC Genomics.
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Identification of Solanum habrochaites loci that quantitatively influence tomato fruit ripening-associated ethylene emissions
2009.
Cin, V. D., Kevany, B., Fei, Zhangjun, Klee, H. J.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik.
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Flavour compounds in tomato fruits: Identification of loci and potential pathways affecting volatile composition
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Mathieu, S., Cin, V. D., Fei, Zhangjun, Li, H., Bliss, P., Taylor, M. G., Klee, H. J., Tieman, D. M.
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Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information
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A Snapshot of the Emerging Tomato Genome Sequence
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Abnormal Physiological and Molecular Mutant Phenotypes Link Chloroplast Polynucleotide Phosphorylase to the Phosphorus Deprivation Response in Arabidopsis
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Genome Sequence of Brucella abortus Vaccine Strain S19 Compared to Virulent Strains Yields Candidate Virulence Genes
2008.
Crasta, O. R., Folkerts, O., Fei, Zhangjun, Mane, S. P., Evans, C., Martino-Catt, S., Bricker, B., Yu, G. X., Du, L., Sobral, B. W.
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Genetic association of ETHYLENE-INSENSITIVE3-like sequence with the sex-determining M locus in cucumber (Cucumis sativus L.)
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Liu, S., Xu, L., Jia, Z., Xu, Y., Yang, Q., Fei, Zhangjun, Lu, X., Chen, H., Huang, S.
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Identification and characterisation of resistance gene analogues from wild Chinese Vitis species
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Gene expression in developing watermelon fruit
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Genome-Based Analysis of Chlamydomonas reinhardtii Exoribonucleases and Poly(A) Polymerases Predicts Unexpected Organellar and Exosomal Features
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Identification of early salt stress response genes in tomato root by suppression subtractive hybridization and microarray analysis
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Early Blood Profiles of Virus Infection in a Monkey Model for Lassa Fever
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Transcriptome and Selected Metabolite Analyses Reveal Multiple Points of Ethylene Control during Tomato Fruit Development
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Comprehensive EST analysis of tomato and comparative genomics of fruit ripening
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