Publications – Jim Giovannoni

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Deregulation of ζ-carotene desaturase in Arabidopsis and tomato exposes a unique carotenoid-derived redundant regulation of floral meristem identity and function.
2023.
McQuinn, R.P., Leroux, J., Sierra, J., Escobar-Tovar, L., Frusciante, S., Finnegan, E.J., Diretto, G., Giuliano, G., Giovannoni, James J., León, P., Pogson, B.J.
The Plant Journal.
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Natural overexpression of CAROTENOID CLEAVAGE DIOXYGENASE 4 in tomato alters carotenoid flux
2023.
Yoo, H.J., Chung, M.Y., Lee, H.A., Lee, S.B., Grandillo, S., Giovannoni, James J., Lee, J.M.
Plant Physiol..
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The transcription factor VviNAC60 regulates senescence- and ripening-related processes in grapevine
2023.
D'Incà, E., Foresti, C., Orduña, L., Amato, A., Vandelle, E., Santiago, A., Botton, A., Cazzaniga, S., Bertini, E., Pezzotti, M., Giovannoni, James J., Vrebalov, J., Matus, J.T., Tornielli, G.B., Zenoni, S.
Plant Physiol..
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Abscisic acid mediated strawberry receptacle ripening involves the interplay of multiple phytohormone signaling networks
2023.
Li, B.J., Shi, Y.N., Jia, H.R., Yang, X.F., Sun, Y.F., Lu, J., Giovannoni, JamesJ., Jiang, G.H., Rose, J.K.C., Chen, K.S.
Front Plant Sci..
14
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A family of methyl esterases converts methyl salicylate to salicylic acid in ripening tomato fruit.
2023.
Frick, E.M., Sapkota, M., Pereira Garcia, L., Wang, Y., Hermanns, A., Giovannoni, James J., van der Knaap, E., Tieman, D.M., Klee, H.J.
Plant Physiol..
191
:
110–124
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Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence.
2022.
Tu, X., Ren, S., Shen, W., Li, J., Li, Y., Li, C., Li, Y., Zong, Z., Xie, W., Grierson, D., Fei, Zhangjun, Giovannoni, James J., Li, P., Zhong, S.
Nat Commun..
13
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7632
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Laser capture of tomato pericarp tissues for microscale carotenoid analysis by supercritical fluid chromatography.
2022.
Ramsey, J.S., Fish, T.L., Thannhauser, T.W., Giovannoni, James J.
Methods Enzymol..
670
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213–233
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Selection pressure on the rhizosphere microbiome can alter nitrogen use efficiency and seed yield in Brassica rapa
2022.
Garcia, J., Gannett, M., Wei, L., Cheng, L., Hu, S., Sparks, J., Giovannoni, James J., Kao-Kniffin, J.
Commun Biol..
5
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959
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Spatiotemporal dynamics of the tomato fruit transcriptome under prolonged water stress.
2022.
Nicolas, P., Shinozaki, Y., Powell, A., Philippe, G., Snyder, S.I., Bao, K., Zheng, Y., Xu, Y., Courtney, L., Vrebalov, J., Casteel, C.L., Mueller, Lukas A., Fei, Zhangjun, Giovannoni, James J., Rose, J.K.C., Catalá, Carmen
Plant Physiol..
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A comparative transcriptomics and eQTL approach identifies SlWD40 as a tomato fruit ripening regulator.
2022.
Zhu, F., Jadhav, S.S., Tohge, T., Salem, M.A., Li, J.M., Giovannoni, James J., Cheng, Y., Alseekh, S., Fernie, A.R.
Plant Physiol..
190
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250–266
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A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity.
2022.
Powell, A.F., Feder, A., Li, J., Schmidt, M.H., Courtney, L., Alseekh, S., Jobson, E.M., Vogel, A., Xu, Y., Lyon, D., Dumschott, K., McHale, M., Sulpice, R., Bao, K., Lal, R., Duhan, A., Hallab, A., Denton, A.K., Bolger, M.E., Fernie, A.R., Hind, S.R., Mueller, Lukas A., Martin, Gregory B., Fei, Zhangjun, Martin, C., Giovannoni, James J., Strickler, S.R., Usadel, B.
Plant J..
110
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1791–1810
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SlERF. F12 modulates the transition to ripening in tomato fruit by recruiting the co-repressor Topless and histone deacetylases to repress key ripening genes
2022.
Deng, H., Chen, Y., Liu, Z., Liu, Z., Shu, P., Wang, R., Hao, Y., Su, D., Pirrello, J., Liu, Y., Li, Z., Grierson, D., Giovannoni, James, J., Bouzayen, M., Liu, M.
The Plant Cell.
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Phytohormones in fruit development and maturation
2021.
Fenn, M.A., Giovannoni, James J.
Plant J..
105
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446–458
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Genome-wide association study reveals the genetic architecture of 27 agronomic traits in tomato
2021.
Ye, J., Wang, X., Wang, W., Yu, H., Ai, G., Li, C., Sun, P., Wang, X., Li, H., Ouyang, B., Zhang, J., Zhang, Y., Han, H., Giovannoni, James, Fei, Zhangjun, Ye, Z.
Plant Physiology.
186
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2078–2092
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A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening.
2021.
Shi, Y., Vrebalov, J., Zheng, H., Xu, Y., Yin, X., Liu, W., Liu, Z., Sorensen, I., Su, G., Ma, Q., Evanich, D., Rose, J.K.C., Fei, Zhangjun, Van Eck, Joyce, Thannhauser, T., Chen, K., Giovannoni, James J.
Proc Natl Acad Sci.
118
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Apple Ripening Is Controlled by a NAC Transcription Factor.
2021.
Migicovsky, Z., Yeats, T.H., Watts, S., Song, J., Forney, C.F., Burgher-MacLellan, K., Somers, D.J., Gong, Y., Zhang, Z., Vrebalov, J., van Velzen, R., Giovannoni, James G., Rose, J.K.C., Myles, S.
Front Genet..
12
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The NAC transcription factor FaRIF controls fruit ripening in strawberry
2021.
Martín-Pizarro, C., Vallarino, J.G., Osorio, S., Meco, V., Urrutia, M., Pillet, J., Casañal, A., Merchante, C., Amaya, I., Willmitzer, L., Fernie, A.R., Giovannoni, James J., Botella, M.A., Valpuesta, V., Posé, D.
Plant Cell.
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Tomato fruit as a model for tissue-specific gene silencing in crop plants
2020.
Feder, A., Jensen, S., Wang, A., Courtney, L., Middleton, L., Van Eck, Joyce, Liu, Y., Giovannoni, James J.
Horticulture Research.
7
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142
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Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding
2020.
Wang, X., Gao, L., Jiao, C., Stravoravdis, S., Hosmani, P.S., Saha, S., Zhang, J., Mainiero, S., Strickler, Susan, R., Catala, Carmen, Martin, Gregory, B., Mueller, Lukas A., Vrebalov, J., Giovannoni, James J., Wu, S., Fei, Zhangjun
Nat Commun.
11
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5817
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GWAS Based on RNA-Seq SNPs and High-Throughput Phenotyping Combined with Climatic Data Highlights the Reservoir of Valuable Genetic Diversity in Regional Tomato Landraces
2020.
Rodriguez, M., Scintu, A., Posadinu, C.M., Xu, Y., Nguyen, C.V., Sun, H., Bitocchi, E., Bellucci, E., Papa, R., Fei, Zhangjun, Giovannoni, James, J., Rau, D., Attene, G.
Genes (Basel).
11
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Manipulation of ZDS in tomato exposes carotenoid- and ABA-specific effects on fruit development and ripening
2020.
McQuinn, R.P., Gapper, N.E., Gray, A.G., Zhong, S., Takayuki, T., Fei, Zhangjun, Fernie, A.R., Giovannoni, James J.
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Comparative genomics of muskmelon reveals a potential role for retrotransposons in the modification of gene expression
2020.
Yano, R., Ariizumi, T., Nonaka, S., Kawazu, Y., Zhong, S., Mueller, Lukas, Giovannoni, James J., Rose, J.K.C., Ezura, H.
Commun Biol..
3
:
432
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The use of SlAdh2 promoter as a novel fruit-specific promoter in transgenic tomato
2020.
Chung, M.Y., Naing, A.H., Vrebalov, J., Shanmugam, A., Lee, D.J., Park, I.H., Kim, C.K., Giovannoni, James G.
J Plant Biotechnol.
47
:
172–178
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Transmission modes affect the population structure of potato virus Y in potato
2020.
da Silva, W., Kutnjak, D., Xu, Y., Xu, Y., Giovannoni, James J., Elena, S.F., Gray, S.
PLoS Pathog..
16
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Ectopic expression of miRNA172 in tomato (Solanum lycopersicum) reveals novel function in fruit development through regulation of an AP2 transcription factor
2020.
Chung, M.Y., Nath, U.K., Vrebalov, J., Gapper, N., Lee, J.M., Lee, D.J., Kim, C.K., Giovannoni, James J.
BMC Plant Biol.
20
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Longitudinal transcriptomic, proteomic, and metabolomic analysis of Citrus limon response to graft inoculation by ‘Candidatus Liberibacter asiaticus‘.
2020.
Ramsey, J.S., Chin, E.L., Chavez, J.D., Saha, S., Mischuk, D., Mahoney, J., Mohr, J., Robison, F.M., Mitrovic, E., Xu, Y., Strickler, S.R., Fernandez, N., Zhong, X., Polek, M., Godfrey, K.E., Giovannoni, James J., Mueller, Lukas A., Slupsky, C.M., Bruce, J.E., Heck, Michelle L.
J Proteome Res.
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Relationships between genome methylation, levels of noncoding RNAs, mRNAs and metabolites in ripening tomato fruit.
2020.
Zuo, J., Grierson, D., Courtney, L.T., Wang, Y., Gao, L., Zhao, X., Zhu, B., Luo, Y., Wang, Q., Giovannoni, James J.
Plant J..
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Manipulation of ZDS in Tomato Exposes Carotenoid- and ABA-Specific Effects on Fruit Development and Ripening
2020.
McQuinn, R.P., Gapper, N.E., Gray, A.G., Zhong, S., Takayuki, T., Fei, Zhangjun, Fernie, A.R., Giovannoni, James J.
Plant Biotechnol J..
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Metabolomics should be deployed in identification and characterization of gene-edited crops
2020.
Fraser, P.D., Aharoni, A., Hall, R.D., Huang, S., Giovannoni, James J., Sonnewald, U., Fernie, A.R.
Plant J..
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Manipulation of β‐carotene levels in tomato fruits results in increased ABA content and extended shelf‐life
2019.
Diretto, G., Frusciante, S., Fabbri, C., Schauer, N., Busta, L., Wang, Z., Matas, A.J., Fiore, A., Rose, J.K.C., Fernie, A.R., Jetter, R., Mattei, B., Giovannoni, James J., Giuliano, G.
Plant Biotechnol J..
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Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development.
2019.
Vallarino, J.G., Merchante, C., Sánchez-Sevilla, J.F., de Luis Balaguer, M.A., Pott, D.M., Ariza, M.T., Casañal, A., Posé, D., Vioque, A., Amaya, I., Willmitzer, L., Solano, R., Sozzani, R., Fernie, A.R., Botella, M.A., Giovannoni, James J., Valpuesta V., Osorio S.
Plant Biotechnol J..
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Genetic and metabolic effects of ripening mutations and vine detachment on tomato fruit quality
2019.
Osorio, S., Carneiro, R.T., Lytovchenko, A., McQuinn, R., Sørensen, I., Vallarino, J.G., Giovannoni, James J., Fernie, A.R., Rose, J.K.C.
Plant Biotechnology Journal.
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The tomato HIGH PIGMENT1/DAMAGED DNA BINDING PROTEIN 1 gene contributes to regulation of fruit ripening
2019.
Wang, A., Chen, D., Ma, Q., Rose, J.K.C., Fei, Zhangjun, Liu, Y., Giovannoni, James J.
Horticulture Research.
6
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15
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Plant Viruses Transmitted in Two Different Modes Produce Differing Effects on Small RNA-Mediated Processes in Their Aphid Vector
2019.
Pinheiro, P.V., Wilson, J.R., Xu, Y., Zheng, Y., Rebelo, A.R., Fattah-Hosseini, S., Kruse, A., Santos Dos Silva, R., Xu, Y., Kramer, M., Giovannoni, James, Fei, Zhangjun, Gray, S., Heck, Michelle L.
Phytobiomes.
3
:
71–81
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Genome-wide association analysis identifies a natural variation in basic helix-loop-helix transcription factor regulating ascorbate biosynthesis via D-mannose/L-galactose pathway in tomato
2019.
Li, W., Ai, G., Li, C., Liu, G., Chen, W., Wang, B., Wang, W., Lu, Y., Zhang, J., Li, H., Ouyang, B., Zhang, H., Fei, Zhangjun, Giovannoni, James J., Ye, Z., Zhang, Y.
PLOS Genetics.
15
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The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
2019.
Gao, L., Gonda, I., Sun, H., Ma, Q., Bao, K., Tieman, D., Burzynski-Chang, E., Fish, T., Stromberg, K., Sacks, G., Thannhauser, T., Foolad, M., Diez, M., Blanca, J., Canizares, J., Xu, Y., van der Knaap, E., Huang, S., Klee, H., Giovannoni, James J., Fei, Zhangjun
Nature Genetics.
:
1546–1718
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The Ptr1 locus of Solanum lycopersicoides confers resistance to race 1 strains of Pseudomonas syringae pv. tomato and to Ralstonia pseudosolanacearum by recognizing the type III effectors AvrRpt2/RipBN
2019.
Mazo-Molina, C., Mainiero, S., Hind, S.R., Kraus, C.M., Vachev, M., Maviane-Macia, F., Lindeberg, M., Saha, S., Strickler, S., Feder, A., Giovannoni, J.J., Smart, C., Peeters, N., Martin, Gregory B.
Molecular Plant-Microbe Interactions.
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Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection
2018.
Gonda, I., Ashrafi, H., Lyon, D.A., Strickler, S.R., Hulse-Kemp, A.M., Ma, Q., Sun, H., Stoffel, K., Powell, A.F., Futrell, S., Thannhauser, T.W., Fei, Zhangjun, Van Deynze, A.E., Mueller, Lukas A., Giovannoni, James J., Foolad, M.R.
The Plant Genome.
12
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Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops
2018.
Zheng, Y., Wu, S., Bai, Y., Sun, H., Jiao, C., Guo, S., Zhao, K., Blanca, J., Zhang, Z., Huang, S., Xu, Y., Weng, Y., Mazourek, M., Reddy, U.K., Ando, K., McCreight, J.D., Schaffer, A.A., Burger, J., Tadmor, Y., Katzir, N., Tang, X., Liu, Y., Giovannoni, James J., Ling, K.S., Wechter, W.P., Levi, A., Garcia-Mas, J., Grumet, R., Fei, Zhangjun
Nucleic Acids Research.
47
:
D1128–D1136
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Natural genetic variation for expression of a SWEET transporter among wild species of Solanum lycopersicum (tomato) determines the hexose composition of ripening tomato fruit
2018.
Shammai, A., Petreikov, M., Yeselson, Y., Faigenboim, A., Moy‐Komemi, M., Cohen, S., Cohen, D., Besaulov, E., Efrati, A., Houminer, N., Bar, M., Ast, T., Schuldiner, M., Klemens, P., Neuhaus, E., Baxter, C., Rickett, D., Bonnet, J., White, R., Giovannoni, James J., Levin, I., Schaffer, A.
The Plant Journal.
96
:
343–357
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HS-SPME-GC-MS Analyses of Volatiles in Plant Populations—Quantitating Compound × Individual Matrix Effects
2018.
Burzynski-Chang, E., Ryona, I., Reisch, B., Gonda, I., Foolad, M., Giovannoni, James, Sacks, G.
Molecules.
23
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2436
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Tomato Multiomics Reveals Consequences of Crop Domestication and Improvement
2018.
Giovannoni, James
Cell.
172
:
6–8
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Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
2018.
Lü, P., Yu, S., Zhu, N., Chen, Y., Zhou, B., Pan, Y., Tzeng, D., Fabi, J.P., Argyris, J., Garcia-Mas, J., Ye, N., Zhang, J., Grierson, D., Xiang, J., Fei, Zhangjun, Giovannoni, J. and Zhong, S.
Nature Plants.
4
:
784–791
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MaMADS2 repression in banana fruits modifies hormone synthesis and signalling pathways prior to climacteric stage
2018.
Yakir, E., Fei, Zhangjun, Sela, N., Xu, Y., Singh, V., Dagar, A., Joshi, J.R., Müller, M., Munné-Bosch, S., Giovannoni, J.J., Vrebalov, J. and Friedman, H.
BMC Plant Biology.
18
:
1471–2229
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Ectopic expression of ORANGE promotes carotenoid accumulation and fruit development in tomato
2018.
Yazdani, M., Sun, Z., Yuan, H., Zeng, S., Thannhauser, T. W., Vrebalov, J., Ma, Q., Xu, Y., Fei, Zhangjun, Van Eck, Joyce, Tian, S., Tadmor, Y., Giovannoni, James J., Li, L.
Plant Biotechnology Journal.
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Genetic mapping identifies loci that influence tomato resistance against Colorado potato beetles
2018.
Vargas-Ortiz, E., Gonda, I., Smeda, J. R., Mutschler, M. A., Giovannoni, James J., Jander, Georg
Nature Scientific Reports.
8
:
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Genetic diversity within African tomato using next generation sequencing
2018.
Mungai, G. W., Owino, W., Ambuko, J., Giovannoni, James J., Nyende, A. B., Michuki, G.
PLANT GENETIC RESOURCES-CHARACTERIZATION AND UTILIZATION.
:
1–10
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Deciphering Genetic Factors that Determine Melon Fruit-Quality Traits Using RNA-Seq-Based High-Resolution QTL and eQTL Mapping
2018.
Galpaz, N., Gonda, I., Shem-Tov, D., Barad, O., Tzuri, G., Lev, S., Fei, Zhangjun, Xu, Y., Lombardi, N., Mao, L., Jiao, C., Harel-Beja, R., Doron-Faigenboim, A., Tzfadia, O., Bar, E., Meir, A., Sa'ar, U., Fait, A., Halperin, E., Kenigswald, M., Fallik, E., Kol, G., Ronen, G., Burger, Y., Gur, A., Tadmor, Y., Portnoy, V., Schaffer, A. A., Lewinsohn, E., Giovannoni, James J., Katzir, N.
The Plant Journal.
94
:
169–191
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Differential metabolism of L–phenylalanine in the formation of aromatic volatiles in melon (Cucumis melo L.) fruit
2018.
Gonda, I., Davidovich-Rikanati, R., Bar, E., Lev, S., Jhirad, P., Meshulam, Y., Wissotsky, G., Portnoy, V., Burger, J., Schaffer, A. A., Tadmor, Y., Giovannoni, James J., Fei, Zhangjun, Fait, A., Katzir, N., Lewinsohn, E.
Phytochemistry.
148
:
122–131
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High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening
2018.
Shinozaki, Y., Nicolas, P., Fernandez-Pozo, N., Ma, Q., Evanich, D. J., Shi, Y., Xu, Y., Zheng, Y., Snyder, S. I., Martin, L. BB, Ruiz-May, E., Thannhauser, T. W., Chen, K., Domozych, D. S., Catala, Carmen, Fei, Zhangjun, Mueller, Lukas A., Giovannoni, James J., Rose, Jocelyn
Nature Communications.
9
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Potato leafroll virus alters small RNA production in its aphid vector during plant viral infection to promote virus dispersal
2017.
Wilson, J., Pinheiro, P., Xu, Y., Zheng, Y., Rebelo, A. R., Fattahalhosseini, S., Kruse, A., Dos Silva, R. S., Xu, Y., Giovannoni, J., Fei, Zhangjun, Gray, S., Heck, Michelle L.
PHYTOPATHOLOGY.
107
:
206–207
Carotenoid profiling of the leaves of selected African eggplant accessions subjected to drought stress
2017.
Mibei, E. K., Ambuko, J., Giovannoni, James J., Onyango, A. N., Owino, W. O.
Food Science and Nutrition.
5
:
113–122
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Transient regulation of three clustered tomato class-I small heat-shock chaperone genes by ethylene is mediated by SlMADS-RIN transcription factor
2017.
Shukla, V., Upadhyay, R. K., Tucker, M. L., Giovannoni, James J., Rudrabhatla, S. V., Mattoo, A. K.
Nature Scientific Reports.
7
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Metabolomic analyses to evaluate the effect of drought stress on selected African Eggplant accessions
2017.
Mibei, E. K., Owino, W. O., Ambuko, J., Giovannoni, James J., Onyango, A. N.
Journal of the Science of Food and Agriculture.
98
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205–216
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Overexpression of the class D MADS-box gene Sl-AGL11 impacts fleshy tissue differentiation and structure in tomato fruits
2017.
Huang, B., Routaboul, J. M., Liu, M., Deng, W., Maza, E., Mila, I., Hu, G., Zouine, M., Frasse, P., Vrebalov, J. T., Giovannoni, James J., Li, Z., van der Rest, B., Bouzayen, M., Hancock, R.
Journal of Experimental Botany.
68
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4869–4884
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An InDel in the Promoter of Al-ACTIVATED MALATE TRANSPORTER9 Selected during Tomato Domestication Determines Fruit Malate Contents and Aluminum Tolerance
2017.
Ye, J., Wang, X., Hu, T., Zhang, F., Wang, B., Li, C., Yang, T., Li, H., Lu, Y., Giovannoni, James J., Zhang, Y., Giovannoni, James J.
The Plant Cell.
29
:
2249–2268
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AtPDS overexpression in tomato: Exposing unique patterns of carotenoid self-regulation and an alternative strategy for the enhancement of fruit carotenoid content
2017.
Mcquinn, R. P., Wong, B., Giovannoni, James J.
Plant Biotechnology Journal.
16
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482–494
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Next-generation sequencing-based QTL mapping for unravelling causative genes associated with melon fruit quality traits
2017.
Portnoy, V., Gonda, I., Galpaz, N., Tzuri, G., Lev, S., Kenigswald, M., Fei, Zhangjun, Barad, O., Harel-Beja, R., Doron-Faigenboim, A., Bar, E., Sáar, U., Xu, Y., Lombardi, N., Mao, L., Jiao, C., Kol, G., Gur, A., Fallik, E., Tadmor, Y., Burger, Y., Schaffer, A. A., Giovannoni, J., Lewinsohn, E., Katzir, N.
II INTERNATIONAL SYMPOSIUM ON TOMATO DISEASES.
1151
:
9–16
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Delayed response to cold stress is characterized by successive metabolic shifts culminating in apple fruit peel necrosis
2017.
Gapper, N. E., Hertog, M. LATM, Lee, J., Buchanan, D. A., Leisso, R. S., Fei, Zhangjun, Qu, G., Giovannoni, James J., Johnston, J. W., Schaffer, R. J., Nicolaï, B. M., Mattheis, J. P., Watkins, C. B., Rudell, D. R.
BMC Plant Biology.
17
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The Epigenome and Transcriptional Dynamics of Fruit Ripening
2017.
Giovannoni, James J., Nguyen, C., Ampofo, B., Zhong, S., Fei, Zhangjun
Annual Review of Plant Biology.
68
:
61–84
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The Tomato Expression Atlas
2017.
Fernandez-Pozo, N., Zheng, Y., Snyder, S. I., Nicolas, P., Shinozaki, Y., Fei, Zhangjun, Catala, Carmen, Giovannoni, James J., Rose, J. KC, Mueller, Lukas A.
Bioinformatics (Oxford, England).
33
:
2397–2398
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Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening
2016.
Yin, X. R., Xie, X. L., Xia, X. J., Yu, J. Q., Ferguson, I. B., Giovannoni, James J., Chen, K. S.
The Plant Journal.
86
:
403–412
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Gene expression and metabolism preceding soft scald, a chilling injury of ‘Honeycrisp’ apple fruit
2016.
Leisso, R. S., Gapper, N. E., Mattheis, J. P., Sullivan, N. L., Watkins, C. B., Giovannoni, James J., Schaffer, R. J., Johnston, J. W., Hanrahan, I., Hertog, M. LATM, Nicolaï, B. M., Rudell, D. R.
BMC Genomics.
17
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Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation
2016.
Zhang, B., Tieman, D. M., Jiao, C., Xu, Y., Chen, K., Fe, Z., Giovannoni, James J., Klee, H. J.
Proceedings of the National Academy of Sciences.
113
:
12580–12585
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Banana MaMADS Transcription Factors Are Necessary for Fruit Ripening and Molecular Tools to Promote Shelf-Life and Food Security
2016.
Elitzur, T., Yakir, E., Quansah, L., Zhangjun, F., Vrebalov, J., Khayat, E., Giovannoni, James J., Friedman, H.
Plant Physiology.
171
:
380–391
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Gr and hp-1 tomato mutants unveil unprecedented interactions between arbuscular mycorrhizal symbiosis and fruit ripening
2016.
Chialva, M., Zouari, I., Salvioli, A., Novero, M., Vrebalov, J., Giovannoni, James J., Bonfante, P.
Planta.
244
:
155–165
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Correction for Zhang et al., Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation
2016.
Zhang, B., Tieman, D. M., Jiao, C., Xu, Y., Chen, K., Fei, Zhangjun, Giovannoni, James J., Klee, H. J.
Proceedings of the National Academy of Sciences of the United States of America.
113
:
E8007–E8007
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iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
2016.
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Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development
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Branched-chain and aromatic amino acid catabolism into aroma volatiles in Cucumis melo L. fruit
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Integrative Transcript and Metabolite Analysis of Nutritionally Enhanced DE-ETIOLATED1 Downregulated Tomato Fruit
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A genetic map of melon highly enriched with fruit quality QTLs and EST markers, including sugar and carotenoid metabolism genes
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Molecular biology of ethylene during tomato fruit development and maturation
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The molecular and biochemical basis for varietal variation in sesquiterpene content in melon (Cucumis melo L.) rinds
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AGFD 31-Genetic regulation of carotenoid metabolism during tomato fruit ripening
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A physical map of the highly heterozygous Populus genome: Integration with the genome sequence and genetic map and analysis of haplotype variation
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A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
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Euchromatin and Pericentromeric Heterochromatin: Comparative Composition in the Tomato Genome
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Transcriptome and Selected Metabolite Analyses Reveal Multiple Points of Ethylene Control during Tomato Fruit Development
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