Publications – Zhangjun Fei
A Citrullus genus super-pangenome reveals extensive variations in wild and cultivated watermelons and sheds light on watermelon evolution and domestication
2023.
Plant Biotechnology Journal.
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Starch deficiency in tomato causes transcriptional reprogramming that modulates fruit development, metabolism and stress responses
2023.
Journal of Experimental Botany.
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Transcriptomic and metabolic profiling of watermelon uncovers the role of salicylic acid and flavonoids in the resistance to cucumber green mottle mosaic virus
2023.
Journal of Experimental Botany.
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Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species
2023.
Nature Genetics.
55
:852–860
Genomic analyses reveal dead-end hybridization between two deeply divergent kiwifruit species rather than homoploid hybrid speciation
2023.
The Plant Journal.
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SnRK1 kinase-mediated phosphorylation of transcription factor bZIP39 regulates sorbitol metabolism in apple
2023.
Plant Physiology.
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The Torreya grandis genome illuminates the origin and evolution of gymnosperm-specific sciadonic acid biosynthesis.
2023.
Nat Commun..
14
:1315
Characterization of the USDA Cucurbita pepo, C. moschata, and C. maxima germplasm collections
2023.
Frontiers in Plant Science.
14
:
Loss of OPT3 function decreases phloem copper levels and impairs crosstalk between copper and iron homeostasis and shoot-to-root signaling in Arabidopsis thaliana
2023.
Plant Cell.
35
:2157–2185
Horizontally transferred genes as RNA interference targets for aphid and whitefly control
2022.
Plant Biotechnol J..
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Domestication and selection footprints in Persian walnuts (Juglans regia)
2022.
PLoS Genet..
18
:e1010513
Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence.
2022.
Nat Commun..
13
:7632
Loss of function of the bHLH transcription factor Nrd1 in tomato enhances resistance to Pseudomonas syringae
2022.
Plant Physiol..
190
:1334–1348
Spatiotemporal dynamics of the tomato fruit transcriptome under prolonged water stress.
2022.
Plant Physiol..
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Rapid growth of Moso bamboo (Phyllostachys edulis): Cellular roadmaps, transcriptome dynamics, and environmental factors
2022.
The Plant Cell.
34
:3577–3610
Cellular differentiation, hormonal gradient, and molecular alternation between the division zone and the elongation zone of bamboo internodes
2022.
Physiologia Plantarum.
174
:e13744
An apple somatic mutation of delayed fruit maturation date is primarily caused by a retrotransposon insertion-associated large deletion
2022.
The Plant Journal.
111
:1609–1625
Genome Sequencing of up to 6,000-Year-Old Citrullus Seeds Reveals Use of a Bitter-Fleshed Species Prior to Watermelon Domestication
2022.
Molecular Biology and Evolution.
39
:
Long-Term Lacticaseibacillus rhamnosus GG Storage at Ambient Temperature in Vegetable Oil: Viability and Functional Assessments
2022.
Journal of Agricultural and Food Chemistry.
70
:9399–9411
Chromosome-scale genome assemblies of wild tomato relatives Solanum habrochaites and Solanum galapagense reveal structural variants associated with stress tolerance and terpene biosynthesis
2022.
Horticulture Research.
9
:
Graph pangenome captures missing heritability and empowers tomato breeding.
2022.
Nature.
606
:527–534
Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance
2022.
BMC Biology.
20(1)
:
Genomic insights into the origin, adaptive evolution, and herbicide resistance of Leptochloa chinensis, a devastating tetraploid weedy grass in rice fields
2022.
15
:1045–1058
Combined nature and human selections reshaped peach fruit metabolome
2022.
Genome Biology.
23(1)
:
Dynamically expressed small RNAs, substantially driven by genomic structural variants, contribute to transcriptomic changes during tomato domestication
2022.
The Plant Journal.
110
:1536–1550
The tomato yellow leaf curl virus C4 protein alters the expression of plant developmental genes correlating to leaf upward cupping phenotype in tomato.
2022.
PLoS One.
17
:e0257936
A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity.
2022.
Plant J..
110
:1791–1810
Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber
2022.
Nature Communications.
13
:
Genomic analyses provide insights into spinach domestication and the genetic basis of agronomic traits
2021.
Nat Commun..
12
:7246
Interspecific Recombination Between Zucchini Tigre Mosaic Virus and Papaya Ringspot Virus Infecting Cucurbits in China
2021.
Frontiers in Microbiology.
12
:
Bt Cry1Ac resistance in Trichoplusia ni is conferred by multi-gene mutations
2021.
Insect Biochemistry and Molecular Biology.
140
:
A systems genetics approach reveals PbrNSC as a regulator of lignin and cellulose biosynthesis in stone cells of pear fruit
2021.
Genome Biology.
22
:
Spelling Changes and Fluorescent Tagging With Prime Editing Vectors for Plants
2021.
Frontiers in Genome Editing.
3
:
Cellular and molecular characterizations of the irregular internode division zone formation of a slow growing bamboo variant
2021.
Tree Physiology.
:
Genome-wide association study reveals the genetic architecture of 27 agronomic traits in tomato
2021.
Plant Physiology.
186
:2078–2092
A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening.
2021.
Proc Natl Acad Sci.
118
:
Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics
2021.
Horticulture Research.
7(1)
:
A chromosome-level genome of a Kordofan melon illuminates the origin of domesticated watermelons
2021.
Proceedings of the National Academy of Sciences of the United States of America.
118
:
A chromosome-level genome of a Kordofan melon illuminates the origin of domesticated watermelons
2021.
Proc Natl Acad Sci U S A.
:
PIF4 negatively modulates cold tolerance in tomato anthers via temperature-dependent regulation of tapetal cell death
2021.
Plant Cell.
:
Genome sequencing sheds light on the contribution of structural variants to Brassica oleracea diversification
2021.
BMC Biol..
:
Comparative transcriptome profiling of Chinese wild grapes provides insights into powdery mildew resistance
2021.
:
Ethylene-regulated asymmetric growth of the petal base promotes flower opening in rose (Rosa hybrida)
2021.
Plant Cell..
:
Genomic analyses provide insights into peach local adaptation and responses to climate change
2021.
Genome Res..
:
Genome-wide association studies provide insights into the genetic determination of fruit traits of pear
2021.
:
Transcriptome analysis provides insights into the responses of sweet potato to sweet potato virus disease (SPVD)
2021.
:
Endomembrane architecture and dynamics during secretion of the extracellular matrix of the unicellular charophyte, Penium margaritaceum
2020.
J Exp Bot..
:
Auxin Regulates Sucrose Transport to Repress Petal Abscission in Rose (Rosa hybrida)
2020.
Plant Cell.
:
The genome and transcriptome analysis of snake gourd provide insights into its evolution and fruit development and ripening
2020.
Hortic Res..
:
Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding
2020.
Nat Commun.
11
:5817
GWAS Based on RNA-Seq SNPs and High-Throughput Phenotyping Combined with Climatic Data Highlights the Reservoir of Valuable Genetic Diversity in Regional Tomato Landraces
2020.
Genes (Basel).
11
:
Manipulation of ZDS in tomato exposes carotenoid- and ABA-specific effects on fruit development and ripening
2020.
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Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations
2020.
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Insights into population structure of East African sweetpotato cultivars from hybrid assembly of chloroplast genomes
2020.
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Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication
2020.
:
CFM1, a Member of the CRM-domain Protein Family, Functions in Chloroplast Group II Intron Splicing in Setaria viridis
2020.
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Comprehensive transcriptome analysis and functional characterization of PR-5 for its involvement in tomato Sw-7 resistance to tomato spotted wilt tospovirus
2020.
Sci Rep.
:
Genome sequence of Fusarium oxysporum f. sp. conglutinans, the etiological agent of cabbage Fusarium wilt
2020.
Mol Plant Microbe Interact..
:
An integrated peach genome structural variation map uncovers genes associated with fruit traits
2020.
Genome Biol..
21
:258
QTL mapping of resistance to Fusarium oxysporum f. sp. niveum race 2 and Papaya ringspot virus in Citrullus amarus
2020.
Theor Appl Genet..
133
:677–687
Dietary Fructose Alters the Composition, Localization and Metabolism of Gut Microbiota in Association with Worsening Colitis
2020.
Cell Mol Gastroenterol Hepatol.
:
Quantitative trait loci and differential gene expression analyses reveal the genetic basis for negatively associated β-carotene and starch content in hexaploid sweetpotato [Ipomoea batatas (L.) Lam.]
2020.
Theor Appl Genet..
133
:23–36
Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics
2020.
Hortic Res..
7
:
Deep Sequencing of Small RNAs in the Whitefly Bemisia tabaci Reveals Novel MicroRNAs Potentially Associated with Begomovirus Acquisition and Transmission
2020.
Insects..
:
Auxin Regulates Sucrose Transport to Repress Petal Abscission in Rose (Rosa hybrida)
2020.
Plant Cell..
:
Setaria viridis chlorotic and seedling-lethal mutants define critical functions for chloroplast gene expression
2020.
Plant J..
:
Rosa Hybrida RhERF1 and RhERF4 Mediate Ethylene- And Auxin-Regulated Petal Abscission by Influencing Pectin Degradation
2020.
Plant J..
:
Identification of Conserved Gene-Regulatory Networks That Integrate Environmental Sensing and Growth in the Root Cambium
2020.
Curr Biol..
:
Localization Shift of a Sugar Transporter Contributes to Phloem Unloading in Sweet Watermelons
2020.
New Phytol..
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Genome analysis of plant growth-promoting rhizobacterium Pseudomonas chlororaphis subsp. aurantiaca JD37 and insights from comparasion of genomics with three Pseudomonas strains.
2020.
Microbiol Res..
:
A MYB/bHLH complex regulates tissue-specific anthocyanin biosynthesis in the inner pericarp of red-centered kiwifruit Actinidia chinensis cv. Hongyang.
2020.
Plant J..
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A key ‘foxy’ aroma gene is regulated by homology-induced promoter indels in the iconic juice grape ‘Concord’.
2020.
Hortic Res..
7
:
Genome-wide identification of genes encoding putative secreted E3 ubiquitin ligases and functional characterization of PbRING1 in the biotrophic protist Plasmodiophora brassicae.
2020.
Curr Genet..
:
Chromosome-level genome assembly of the greenhouse whitefly (Trialeurodes vaporariorum Westwood).
2020.
Mol Ecol Resour..
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Tomato stigma exsertion induced by high temperature is associated with the jasmonate signalling pathway.
2020.
Plant Cell Environ..
42
:
Cutin and suberin: assembly and origins of specialized lipidic cell wall scaffolds.
2020.
Elsevier.
55
:
Manipulation of ZDS in Tomato Exposes Carotenoid- and ABA-Specific Effects on Fruit Development and Ripening
2020.
Plant Biotechnol J..
:
Transcriptome-based identification and validation of reference genes for plant-bacteria interaction studies using Nicotiana benthamiana
2019.
Sci Rep..
9
:
Integrated single-base resolution maps of transcriptome, sRNAome and methylome of Tomato yellow leaf curl virus (TYLCV) in tomato
2019.
Sci Rep..
9
:
Cellular and molecular characterization of a thick-walled variant reveal a pivotal role of shoot apical meristem in transverse development of bamboo culm
2019.
J Exp Bot..
70
:3911–3926
Characterization of the Developmental Dynamics of the Elongation of a Bamboo Internode During the Fast Growth Stage
2019.
Tree Physiol..
39
:1201–1214
Mutation of ABC transporter ABCA2 confers resistance to Bt toxin Cry2Ab in Trichoplusia ni
2019.
Insect Biochemistry and Molecular Biology.
112
:
A CLE–SUNN module regulates strigolactone content and fungal colonization in arbuscular mycorrhiza
2019.
Nature Plants.
5
:933–939
Differences in gene expression in whitefly associated with CYSDV-infected and virus-free melon, and comparison with expression in whiteflies fed on ToCV- and TYLCV-infected tomato
2019.
BMC Genomics.
20
:
Identification of Phloem Mobile mRNAs Using the Solanaceae Heterograft System
2019.
Methods in Molecular Biology.
2014
:
A high-quality chromosome-level genome assembly of a generalist herbivore, Trichoplusia ni
2019.
Molecular Ecology Resources.
19
:485–496
Genome-wide characterization and expression profiling of SWEET genes in cabbage (Brassica oleracea var. capitata L.) reveal their roles in chilling and clubroot disease responses JO – BMC Genomics
2019.
BMC Genomics.
20
:
Integrated single-base resolution maps of transcriptome, sRNAome and methylome of Tomato yellow leaf curl virus (TYLCV) in tomato
2019.
Scientific Reports.
9
:
Genome-wide profiling of piRNAs in the whitefly Bemisia tabaci reveals cluster distribution and association with begomovirus transmission
2019.
PLOS One.
:
Identification of the grape basic helix–loop–helix transcription factor family and characterization of expression patterns in response to different stresses
2019.
Plant Growth Regulation.
88
:19–39
A MYB/bHLH complex regulates tissue‐specific anthocyanin biosynthesis in the inner pericarp of red‐centered kiwifruit Actinidia chinensis cv. Hongyang
2019.
The.
The Plant Journal
:
Transcriptome analysis provides insights into the regulation of metabolic processes during postharvest cold storage of loquat (Eriobotrya japonica) fruit
2019.
Horticulture Research.
6
:
Differential gene regulatory pathways and co-expression networks associated with fire blight infection in apple (Malus × domestica)
2019.
Horticulture Research.
6
:
Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping
2019.
GigaScience.
8
:
Detection and genome characterization of a novel member of the genus Polerovirus from zucchini (Cucurbita pepo) in China
2019.
Archives of Virology.
:
Rosa hybrida RhERF1 and RhERF4 Mediate Ethylene and Auxin‐Regulated Petal Abscission by Influencing Pectin Degradation
2019.
The Plant Journal.
:
Comprehensive transcriptome analysis and functional characterization of PR-5 for its involvement in tomato Sw-7 resistance to tomato spotted wilt tospovirus
2019.
Scientific Reports.
9
:2045–2322
Genome sequence of the corn leaf aphid (Rhopalosiphum maidis Fitch)
2019.
GigaScience.
8
:giz033
The tomato HIGH PIGMENT1/DAMAGED DNA BINDING PROTEIN 1 gene contributes to regulation of fruit ripening
2019.
Horticulture Research.
6
:15
Plant Viruses Transmitted in Two Different Modes Produce Differing Effects on Small RNA-Mediated Processes in Their Aphid Vector
2019.
Phytobiomes.
3
:71–81
Genome and evolution of the arbuscular mycorrhizal fungus Diversispora epigaea (formerly Glomus versiforme) and its bacterial endosymbionts
2019.
New Phytologist.
221
:1556–1573
Transcriptional responses of the Trichoplusia ni midgut to oral infection by the baculovirus Autographa californica Multiple Nucleopolyhedrovirus
2019.
Journal of Virology.
93
:
Genome-wide association analysis identifies a natural variation in basic helix-loop-helix transcription factor regulating ascorbate biosynthesis via D-mannose/L-galactose pathway in tomato
2019.
PLOS Genetics.
15
:
Genome-wide identification of genes encoding putative secreted E3 ubiquitin ligases and functional characterization of PbRING1 in the biotrophic protist Plasmodiophora brassicae
2019.
Current Genetics.
:1–11
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
2019.
Nature Genetics.
:1546–1718
Transcriptome-based identification and validation of reference genes for plant-bacteria interaction studies using Nicotiana benthamiana
2019.
Scientific Reports.
9
:
Plant Genome Editing Database (PGED): A Call for Submission of Information about Genome-Edited Plant Mutants
2019.
Molecular Plant.
12
:127–129
Diverse Sorghum bicolor accessions show marked variation in growth and transcriptional responses to arbuscular mycorrhizal fungi
2018.
Plant, Cell & Environment.
42
:1758–1774
Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection
2018.
The Plant Genome.
12
:
Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops
2018.
Nucleic Acids Research.
47
:D1128–D1136
A high‐quality chromosome‐level genome assembly of a generalist herbivore, Trichoplusia ni
2018.
Molecular Ecology Resources.
19
:485–496
Plant lncRNAs are enriched in and move systemically through the phloem in response to phosphate deficiency
2018.
Journal of Integrative Plant Biology.
:
Transcriptomic and functional analysis of cucumber (Cucumis sativus L.) fruit phloem during early development
2018.
The Plant Journal.
:
Global Analysis of Baculovirus Autographa californica Multiple Nucleopolyhedrovirus Gene Expression in the Midgut of the Lepidopteran Host Trichoplusia ni
2018.
Journal of Virology.
92
:e01277-18
Tomato stigma exsertion induced by high temperature is associated with the jasmonate signalling pathway
2018.
Plant, Cell and Environment.
:
Global Analysis of Baculovirus Autographa californica Multiple Nucleopolyhedrovirus Gene Expression in the Midgut of the Lepidopteran Host Trichoplusia ni
2018.
Journal of Virology.
92
:
Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening
2018.
Nature Plants.
4
:784–791
Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement
2018.
Nature Communications.
9
:
Transcriptomic analysis of sweet potato under dehydration stress identifies candidate genes for drought tolerance
2018.
Plant Direct.
:1–13
MaMADS2 repression in banana fruits modifies hormone synthesis and signalling pathways prior to climacteric stage
2018.
BMC Plant Biology.
18
:1471–2229
A high‐quality chromosome‐level genome assembly of a generalist herbivore, Trichoplusia ni
2018.
Molecular Ecology Resources.
:
Morphological dissection and cellular and transcriptome characterizations of bamboo pith cavity formation reveal a pivotal role of genes related to programmed cell death
2018.
Plant Biotechnology Journal.
:
Ectopic expression of ORANGE promotes carotenoid accumulation and fruit development in tomato
2018.
Plant Biotechnology Journal.
:
Elucidation of the Mechanisms of Long-Distance mRNA Movement in a Nicotiana benthamiana /Tomato Heterograft System
2018.
Plant Physiology.
177
:745–758
Tecia solanivora infestation increases tuber starch accumulation inPastusa Suprema potatoes
2018.
Journal of Integrative Plant Biology.
:
Maternal Inheritance of a Single Somatic Animal Cell Displayed by the Bacteriocyte in the Whitefly Bemisia tabaci
2018.
Current Biology.
28
:459–465.e3
The Secretome and N-Glycosylation Profiles of the Charophycean Green Alga, Penium margaritaceum, Resemble Those of Embryophytes
2018.
Proteomes.
6
:14–14
Construction of a genome-anchored, high-density genetic map for melon (Cucumis melo L.) and identification of Fusarium oxysporum f. sp. melonis race 1 resistance QTL
2018.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik.
131
:829–837
Deciphering Genetic Factors that Determine Melon Fruit-Quality Traits Using RNA-Seq-Based High-Resolution QTL and eQTL Mapping
2018.
The Plant Journal.
94
:169–191
Differential metabolism of L–phenylalanine in the formation of aromatic volatiles in melon (Cucumis melo L.) fruit
2018.
Phytochemistry.
148
:122–131
High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening
2018.
Nature Communications.
9
:
Comparative transcriptome analysis reveals networks of genes activated in the whitefly, Bemisia tabaci when fed on tomato plants infected with Tomato yellow leaf curl virus
2018.
Virology.
513
:52–64
The complete mitochondrial genome sequence of spinach, Spinacia oleracea L
2017.
MITOCHONDRIAL DNA PART B-RESOURCES.
2
:339–340
The pomegranate ( Punica granatum L.) genome provides insights into fruit quality and ovule developmental biology
2017.
Plant Biotechnology Journal.
16
:1363–1374
Potato leafroll virus alters small RNA production in its aphid vector during plant viral infection to promote virus dispersal
2017.
PHYTOPATHOLOGY.
107
:206–207
The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ring-spot virus resistance locus
2017.
The Plant Journal.
92
:963–975
TAL effector driven induction of a SWEET gene confers susceptibility to bacterial blight of cotton
2017.
Nature Communications.
8
:15588–15588
Host-secreted antimicrobial peptide enforces symbiotic selectivity in Medicago truncatula
2017.
Proceedings of the National Academy of Sciences.
114
:6854–6859
Molecular and Biological Characterization of Tomato mottle mosaic virus and Development of RT-PCR Detection
2017.
Plant Disease.
101
:704–711
Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant
2017.
PLOS One.
12
:e0170715–e0170715
Decreased sorbitol synthesis leads to abnormal stamen development and reduced pollen tube growth via an MYB transcription factor, MdMYB39L, in apple ( Malus domestica )
2017.
New Phytologist.
217
:641–656
Next-generation sequencing-based QTL mapping for unravelling causative genes associated with melon fruit quality traits
2017.
II INTERNATIONAL SYMPOSIUM ON TOMATO DISEASES.
1151
:9–16
Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes
2017.
Molecular Plant.
10
:1293–1306
Diversity, Distribution, and Evolution of Tomato Viruses in China Uncovered by Small RNA Sequencing
2017.
Journal of Virology.
91
:e00173-17–e00173-17
Loss-of-function mutation of the calcium sensor CBL1 increases aluminum sensitivity in Arabidopsis
2017.
New Phytologist.
214
:830–841
Using Small RNA-seq Data to Detect siRNA Duplexes Induced by Plant Viruses
2017.
Genes (Basel).
8
:163–163
VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs
2017.
Virology.
500
:130–138
Comprehensive transcriptome analyses reveal tomato plant responses to tobacco rattle virus-based gene silencing vectors
2017.
Nature Scientific Reports.
7
:
Use of RNA-seq data to identify and validate RT-qPCR reference genes for studying the tomato-Pseudomonas pathosystem
2017.
Nature Scientific Reports.
7
:44905–44905
Transcriptome analysis of the whitefly, Bemisia tabaci MEAM1 during feeding on tomato infected with the crinivirus, Tomato chlorosis virus, identifies a temporal shift in gene expression and differential regulation of novel orphan genes
2017.
BMC Genomics.
18
:
Draft genome of spinach and transcriptome diversity of 120 Spinacia accessions
2017.
Nature Communications.
8
:15275–15275
Cellular and molecular characterizations of a slow-growth variant provide insights into the fast growth of bamboo
2017.
Tree Physiology.
38
:1–14
Comprehensive Transcriptome Analyses Reveal that Potato Spindle Tuber Viroid Triggers Genome-Wide Changes in Alternative Splicing, Inducible trans -Acting Activity of Phased Secondary Small Interfering RNAs, and Immune Responses
2017.
Journal of Virology.
91
:e00247-17–e00247-17
Exploring key cellular processes and candidate genes regulating the primary thickening growth of Moso underground shoots
2017.
New Phytologist.
214
:81–96
Transcriptome Analysis of Mango (Mangifera indica L.) Fruit Epidermal Peel to Identify Putative Cuticle-Associated Genes
2017.
Nature Scientific Reports.
7
:46163–46163
Identification and expression profiling of microRNAs involved in the stigma exsertion under high-temperature stress in tomato
2017.
BMC Genomics.
18
:
Distinct Mechanisms of the ORANGE Protein in Controlling Carotenoid Flux
2017.
Plant Physiology.
173
:376–389
Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement
2017.
Nature Communications.
8
:
Unravelling the Genetic Diversity among Cassava Bemisia tabaci Whiteflies Using NextRAD Sequencing
2017.
Genome biology and evolution.
9
:2958–2973
Delayed response to cold stress is characterized by successive metabolic shifts culminating in apple fruit peel necrosis
2017.
BMC Plant Biology.
17
:
The Tomato Kinase Pti1 Contributes to Production of Reactive Oxygen Species in Response to Two Flagellin-Derived Peptides and Promotes Resistance to Pseudomonas syringae Infection
2017.
Molecular Plant-Microbe Interactions.
30
:725–738
Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis
2017.
The Plant Cell.
29
:tpc.00363.2017–tpc.00363.2017
The Epigenome and Transcriptional Dynamics of Fruit Ripening
2017.
Annual Review of Plant Biology.
68
:61–84
Analysis of the tomato leaf transcriptome during successive hemibiotrophic stages of a compatible interaction with the oomycete pathogen Phytophthora infestans
2016.
Molecular Plant Pathology.
17
:42–54
Evolutionary conservation of candidate osmoregulation genes in plant phloem sap-feeding insects
2016.
Insect Molecular Biology.
25
:251–258
Correction for Zhang et al., Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation
2016.
Proceedings of the National Academy of Sciences of the United States of America.
113
:E8007–E8007
iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
2016.
Molecular Plant.
9
:1667–1670
Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size
2016.
BMC Genomics.
17
:
The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees
2016.
PLoS Genetics.
12
:e1006433–e1006433
HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots
2016.
Physiologia Plantarum.
157
:221–233
Comprehensive Transcriptome Profiling Reveals Long Noncoding RNA Expression and Alternative Splicing Regulation during Fruit Development and Ripening in Kiwifruit (Actinidia chinensis)
2016.
Frontiers in Plant Science.
7
:
Pathogen Infection and MORC Proteins Affect Chromatin Accessibility of Transposable Elements and Expression of Their Proximal Genes in Arabidopsis
2016.
Molecular Plant-Microbe Interactions.
29
:674–687
Vascular-mediated signalling involved in early phosphate stress response in plants
2016.
Nature Plants.
2
:16033–16033
The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host 5 adaptation, and insecticide resistance
2016.
BMC Biology.
14
:
Fruit carotenoid-deficient mutants in tomato reveal a function of the plastidial isopentenyl diphosphate isomerase (IDI1) in carotenoid biosynthesis
2016.
The Plant Journal.
88
:82–94
Using Small RNA Deep Sequencing Data to Detect Human Viruses
2016.
BioMed Research International.
2016
:2596782–9
Identification of miRNAs and their targets through high-throughput sequencing and degradome analysis in male and female Asparagus officinalis
2016.
BMC Plant Biology.
16
:
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